XLOC_030907 (ap3m2)


Basic Information

Item Value
gene id XLOC_030907
gene name ap3m2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 14375108 ~ 14390445 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00060088
AGATTCTGCTTTATTACAAAATACTGGGAAGTGGTGGGAGACATAAGAATCCAGAAATCCTGCCACGATGATCCACAGTCTATTCCTCGTTAACGCATCGGGGGACATCTTTCTGGAGAAGCACTGGAAGAGTGTGGTCAGCCGATCTGTATGTGACTACTTCTTCGAGGCCCTGGAGCGCGCCACGGAACCGGAGAACGTACCTCCGGTGATCCCGACGCCGCATCACTACCTCATCAACGTGCTCCGCCATCGCATCTACTTCGTGGCCGTGATACAGAGCGAGGTGCCGCCGCTGTTTGTCATCGAGTTCCTCCATCGTGTGGTCGACACCTTTCAGGACTATTTTGGGGTGTGCACAGAGGCTGCTATTAAAGACAATGTAGTTGTAGTCTATGAGCTGCTGGAGGAGATGCTGGATAATGGCTTCCCCCTGGCCACCGAATCAAACATCCTAAAAGAGCTCATTAAACCTCCTACCATCCTGCGCACAGTGGTCAACACCATCACAGGAAGTACTAATGTTGGTGAGCAGCTTCCTACAGGTCAGCTATCAGTGGTACCGTGGCGGAGAACAGGTGTTAAATATACCAACAACGAAGCTTATTTCGATGTGGTGGAAGAAATCGATGCTATCATTGACAAATCAGGTTCAACCATCACAGCTGAGATACAGGGAGTGATAGACGCATGTGTGAAACTCACAGGGATGCCAGATCTCACCCTGTCGTTTATGAATCCTCGACTCTTGGATGATGTCAGCTTCCATCCCTGTGTGCGGTTCAAGCGTTGGGAGGCTGAGCGAATTTTGTCTTTTATCCCACCAGACGGCAACTTCCGCCTCCTGTCCTACCACGTCAGCTCACAGAACCTGGTGGCGATCCCAGTGTACGTCAAGCACAACATCAGCTTTAGAGAAGGCAGTTCTCAGGGCCGTTTCGAGCTCACCCTCGGCCCAAAGCAGACCATGGGTAAGGTGGTGGAAGCAGTTCTGGTGAGCAGTCAGCTGCCGCGGGGCGTCCTCAATGCCAACCTCAACCCTTCACAGGGCACTTACACTTTTGACCCTGTCACAAAGCTTTTGTCATGGGATGTGGGGAAGATAAACCCTCAGAAACTGCCGAGTTTAAAAGGGTCCATGAGTCTTCAGGCTGGAGCCTCCAAACCTGATGAGAACCCCACAATCAACATCCAGTTCAAGATTCAACAGCTGGCCATTTCAGGTCTGAAAGTAAATAGGTTGGACATGTATGGCGAGAAGTACAAACCTTTCAAAGGCATCAAATACATGACCAAGGCGGGCAAATTTCAAGTGCGAACCTAGACGACGACTTTCAGCTTCCATTCCGTAGTTAATAAAATTGGTTGGGGACAACGAAGAAAGAGGGAACAGGTTTGAGTAATGTCCTTTGGAATGCATTTCAGGATTAATTCAGGAAATAAATGCTTAGACTGTCCTCCTTTCTGGGAGAGTATGACTCCTGGTGAGGTAAATATTGGTATTAACACTATCAGATGTGCTGTTACATGTCCGCCCAGGTTAAAGTGACAGTAACTGATTCtacgtctctttttttttttttattactttgacCTTTTTATTGTCAGTTTTCGCAATCTAAAACACTTTAGTCTCGTTTCTTCATAGGCTTGAACTCTGCTGTTGTGTATCGTTCTGTGCTGTCCTCCTCTGAGATGTGAGGCGGGCAGAACAGACTTATATTACCATTACAGACTGGTTTTGGCCTCCGTCCCCAATGATTGTGTGCAAAGTAAACCATTTTCAAATGGTTTAACACTGAAGCTTTTGAGTGCttgtttactgtagtattttgaCAGTATAAATCTGCGTTGTTTGATTGTTATTAAAGATTTTCTTTATGGTATTTATTATTGCGTACCTGACCATACCCAAACTATTTGAAGCATAACTGACCAAAACAAATGCTGTACATGATACTTGATTGTCCCGTGTCAGTTGTTTTACACCAGAATgcaacatgcttttaaaaaagatGGACTTGAAGCCAAGTACTACACCCGTCCACTCATGTAAAGTGTAGTTTTTAGACAATTAATTATGATTTGTTTACTTAAGGATACAGAATGAAATACAAGAATATAATCATGTTTTGATTTTAgctactatagttgttgttttttttctttcctccatGCTGTTTTTCAGatgaaaacaaactgtttacagtactatgaaataataaatacacagaaAACATTCTGTTTGGGTGTGTGCAAATGAATTTGTGATTAAAATGAGTTAAGTATGTTTTAGTAA

Function

symbol description
ap3m2 Predicted to be involved in endocytosis. Predicted to act upstream of or within intracellular protein transport. Predicted to be located in Golgi apparatus and cytoplasmic vesicle membrane. Predicted to be part of clathrin adaptor complex. Predicted to be active in cytoplasmic vesicle. Orthologous to human AP3M2 (adaptor related protein complex 3 subunit mu 2).

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006897 endocytosis biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0015031 protein transport biological_process
GO:0030131 clathrin adaptor complex cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0030659 cytoplasmic vesicle membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-021022-2 Predicted to be involved in endocytosis. Predicted to act upstream of or within intracellular protein transport. Predicted to be located in Golgi apparatus and cytoplasmic vesicle membrane. Predicted to be part of clathrin adaptor complex. Predicted to be active in cytoplasmic vesicle. Orthologous to human AP3M2 (adaptor related protein complex 3 subunit mu 2).

Ensembl:

ensembl_id ENSDARG00000016128

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00060088 True 2299 mRNA 0.44 9 14375108 14390445

Neighbor

gene id symbol gene type direction distance location
XLOC_030906 tet3 coding downstream 1446 14306475 ~ 14373662 (-)
XLOC_030905 CR388049.1 coding downstream 129828 14245149 ~ 14245280 (-)
XLOC_030904 npffr1l2 coding downstream 136030 14165567 ~ 14239078 (-)
XLOC_030903 figla coding downstream 526812 13839316 ~ 13848296 (-)
XLOC_030902 add2 coding downstream 539552 13781968 ~ 13835556 (-)
XLOC_030908 kat6a coding upstream 3878 14394323 ~ 14443124 (-)
XLOC_030909 si:ch211-244o22.2 coding upstream 86837 14477282 ~ 14522712 (-)
XLOC_030910 sema4c coding upstream 138656 14529101 ~ 14648433 (-)
XLOC_030911 NA coding upstream 390397 14780842 ~ 15176098 (-)
XLOC_030912 NA coding upstream 609177 14999622 ~ 14999996 (-)
XLOC_030896 AL954191.1 non-coding downstream 842120 13532874 ~ 13532988 (-)
XLOC_030893 NA non-coding downstream 1068403 13277241 ~ 13306705 (-)
XLOC_030888 NA non-coding downstream 1538501 12835526 ~ 12836607 (-)
XLOC_030881 BX276096.2 non-coding downstream 2008783 12366209 ~ 12366325 (-)
XLOC_030913 CR936518.1 non-coding upstream 796378 15186823 ~ 15215784 (-)
XLOC_030915 NA non-coding upstream 917094 15307539 ~ 15310108 (-)
XLOC_030920 BX649391.1 non-coding upstream 1344080 15734525 ~ 15734580 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000071_03901048_03909621 AP3M2 coding CI01000071 null 3901048 ~ 3910637 (+)