XLOC_030908 (kat6a)


Basic Information

Item Value
gene id XLOC_030908
gene name kat6a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 14394323 ~ 14443124 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00060089
GACAAAGGATAGTCTCCTGAAATaagagagaggaggaggaggacaacGAGGCAGCGCCAGGGCTGAGGCCGCTGGGTGCTCCCTACCGGTTGTGAGAGTGTGCTAGGCCTCGGCTTAGCAGTATTAAAGCAACCATGGTGAAGCTGGCTAACCCGCTGTACACTACCTGGATTTTGGAAGCCATCAAGAAGGTAAAAAAGCAAAAGCAGCGGCCGTCCGAAGAACGTATTTGCAATGCGGTGTCAATGTCCCATGGGCTTGACCGCAAGACGGTCTTGGAGCACCTTGAGCTCAGTGTTAAAGATGGTTCCATACTCAAGGTGTCCAACAAGGGGCTCAACTCCTACAAGGACCCTGACAACCCTGGACGTTTATCATTCCCAAAACCCAGGgcgggaggaggaggaggaggttgtGGCAGTGGTGGTGGTGGCGGCGGTGGTGGTGGTTCCAGCACCTCCAGCTCCAGCAAAAAGCCAGGTCTGGACTGGAACAAACTCATCAAGCGTTCTCTGGAGGGGCTTCATGAACCTGGAGGATCATCTCTGAAGAGCATTGAACGCTTTCTAAAATGCCAGGCAGATGTTGCAGGTTATCTGTCTGGCAGTGGCTCGATGGGGCCAGGCATTTTCCACCAGCAACTCCGGCTGGCTCTCAAGCGGGCCTGCTCCCATGGACGGGTGGTTAAACAGGGACCTCTTTTTCGGCTGGTAAGCAGGAGTTCTCACGATGGCACGGGCTGCGTGTCTCTGGATTCTCTTCCTCCTGTGCGACTGCTGCCCCACGAACAAGACCGGcctgTGGCAGAGCCTATACCCATCTGTAGTTTCTGTTTGGGGACCAAGGAACAGAATCGTGACAAGAAGCCAGAAGAGCTCATCTCATGTGCAGACTGTGGGAACAGCGGGCATCCATCGTGTCTGAAGTTCTCTCCAGAGCTCACAGTGCGGGTCAAAGCTCTATGGTGGCAGTGTATCGAGTGCAAGACCTGCAGCAGCTGCCAGGACCAAGGAAAAAATGCAgACAACATGTTGTTCTGTGACTCCTGTGACCGAGGCTTCCACATGGAGTGCTGTGACCCTCCACTAACGCGAATGCCGAAAGGCATGTGGATCTGTCAGATCTGTCGGCCAAGAGAAAAGGGAAGAAAGCTCTTACATGACAAAGCAGCACAAATCAAACGGCGATACAATGCACCACTGGGGCGACCGAAGGGCagACCTGGCCGTCCCTTTAAGAAGATTCGTGGTGGAGGGCGTGGCCGGAGAAGGCGGGGCGCTGGAGGTGTGGATCAGTGTTCACAAGGCTCCTCCTCCCCACACTCTTCCTCAAGCTCCTCCTGCGAAGGTTACCCCGGTGACGATCGCATGCTGTTTTCTCTGAGAGAAGATGACTCTGCACACGGTAGCCTGCGTTTTAACAAGAAAACAAAAGGTTTGATCGATGCCCTCAGCAAGTTCTTCACCCCATCCCCAGATGGCCGGAAAGCCCGTGCTGAAGTGGTGGACTATTCCCAGCAATATCGCATGCGCAAGAAGGGCAACCGGAAAGGCGAGCACGATGACAGGACAGGAGACAATCAGGAGTGCTCAGACAGCTGGCGGGAGGATGAAGACAAGCTGCCAGGACACGAGAATCTAACCGAGAAAGACGTGGAGCTCTTCAGGCACATTCAGGAAATCGCACTACAGAAAGTTGGGGTGACTGGTCCACCTGACCCCCAGATGCGCTGCCCATCAGTTATAGAGTTTGGGAAGTATGAAATTCAGACGTGGTACTCTTCCCCATACCCACAGGAGTACAGCAGGCTCCCTAAGCTCTACCTCTGCGAGTTCTGTCTGCGCTACATGAAGAGCCGCAGTATTCTCTACCAGCACATGCGAAAGTGTAACTGGTTCCACCCGCCTGCCAACGAGATCTACAGGAAGGACGACGTGTCCGTGTTTGAGGTGGATGGAAATGTCAGCACAATATACTGTCAGAATCTGTGTCTGCTTGCCAAGCTCTTCCTGGACCATAAGACGCTATACTATGATGTGGAGCCCTTCCTTTTCTACGTACTCACACAGAACGACAATAAAGGCTGCCATCTCGTGGGATACTTCTCAAAGGAGAAGCATTGTCAACAGAAGTATAACGTGTCCTGTATCATGATTCTTCCACAATATCAGCGCAAGGGCTATGGGCGATTCCTCATTGACTTCAGTTACCTTCTTTCCAAAAGGGAAGGCCAGCCGGGCTCACCAGAGAAGCCACTGTCAGACCTTGGCCGGCTATCCTACATGGCATACTGGCGTAGTGTGGTGTTGGAATGCCTACATGAGATCAGAGATCGACAGCTCTCCATCCGCAAACTCAGCAAAGTCACAGGCATCTGTCCTCAAGATATTACGGCCACCCTGTTAAATCTAAACATGCTGGAACAGAAAGGGGACGGGGTAATTATTATGCGCAGAGAAAAGCTggtagccaatcacatggctcgACTGAAAGCCAAACCTCGGCTCCTTGAAGTCGACCCAGACTGTTTGCGCTGGACACCTGTTATCGTCACCAACACAGTAGTATCTGAAGGAGAAGGGgatgaggatgaggaggaggagggagaGGAGGAACGTAAAGAGATCAAACCCAGCCACAAGAGCTCTCCGCTCTCTTGGCATATGAAAGGAGAACGGGAAAATGAGGAAGAAAAACAGAGCTTCCCAGCATTCCCAAAAAACCAAAGCTCTCCACCATCCTCTTCCGTTTGCAACAATGTTCTCAGTCCTGAACGCCACTCTAATTTTCTTGCAGCTAATGGAGAGCGGAGGGGACCAGGGCGTCCTCCCAAAAACTGGTTGTGGGGAAAGGTAAAGGACGCCCCTCGTACAGTTCCAGCTCGGCCTCGAAAATTAAAGATCACaggagatgaagatgatgatgatgacgatgatgatgaggtggaggatgatgatgaagaggaggaagaggaagaagaggatGAAAGGACTggcatcaataaagtgactgcatcACCATCTTTACACTCAGCCTTAGAAAATGAGCCTGACTCTACATCAGCCTGTCCCATGGAACCCTCCAGGCACCTTACAGTTCCACCCCAACGCAACAGAGGCCGGCCTCCACGGAAAAAGCGTGGCCCAAAACGCAGACTCGGTGAGGAACCTGGAGATGATTTGCCATTGTTGCCCAACAACACAAGGCTGAGTGAACCCTTGCCAGTTTCTCCAGCCTATATGAGTGAGAGCAGTGAAGATGAGGAAGATGAGGAGGAAGAGTCAAGACCTCGTTCACCACCTATCCTCACAAAACCCACATTAGGACTAAAAAGCAAGTCTCAGAAGTCCTTGCGGAAGCGGCGTGTGCGTCAGCGCAGCCATCCCCACAGCAGTGTAGTTACAGAGACCATCTCAGAGACGACTGAGGTTTTGGATGAGCCATTTGTGGATTCAGATTCTGAAAGACCCATGCCAAGACTAGAAGAGGAAACTCCTTTTGGTACCCCTTTACGATGCTATACAGCAGCCCGAAAACACATGGGACCTGCCCTTAAAAGCATCAGCAGAAGCAATCTGTCTGAATCAGAGGAAGATGATCCCACTCCTGTGCTGAAGCCAATTGCTGTCCTGAGAAGACCTGAAACTTCCGATGCCACACAAAGAACAGAGGAAACGTCTGAGATGCCTGAGGTTCCAGTAAAGAAGAAGAAAGGTTGGCCTAAGGGCAAGAGTCGCAAGCCACTCCACTGGAAGAAACGGCCAGGCAGGAAGCCTGGTAGTGGAGCTGGTCAGACAGATGACACCGATCTAGCAGTTCCATCCTCTGAGGACCCTCCTCCTTCAAAAATCAAAATGAAACCTGGCAGGAAACCTCGTAGCTATTACCTGCAGCGAGCCCAAGAGGAAGAGGTTCAACAGGAGTTTGAACAAAGCCAGTTGACTtcgcaacaacaacaacaacaacaacaacaacaacaacaacaacaggcacAAACAGATAATTTAGCACAGGAGGAAAAAGCTTGTAAAAGGACAGCTAGAGCCTTGATATCTGAAATCAGCCCTGAGAAGCAGAAAGACtcagaagatgatgatgatgattttcttcAGGGTTTTAGAGAGTCATCCAGGCCCAAAAAACGAGGTCGGCCACCAAAAAATGCCAACCTCCCTTCCACTGTTCCCAAACCTCCCCCTTTGTCTGAGCCAGAAGAGGAAGATGAGGAGGAAGACAGATGGACCGAGGAAAAGCTTAGCCGTCCACCTTCTCGAACCATGTCACAGTCTTCCAGCTCCAGAGTCCCTCAGCCAAGAGCTAACACAAACATGGCAGATGCAGAGGAAGATGAGGAGCGAGATGATGAAGATTGTAATAACAGGGTCAGTCGGAAAACAGCTACAACACCAGGCTCTGGGAGTCGGCGTAGTGATGACCATgatgctgatgatgaaggggatgGCCGTCTTGAAGAAAAAAGTGACAGCAGCAGTAGCAGTAAAAGGCGAAAAGGCCAAGACTCTGAAGATGATGCGGAGGAGCAGGAGGATGAGGAAGATGAGGAACCACCATCACCTGCTCACACTCCACCTGTAAAAGAAGAACCCCAGAGCAGTGAGAGTTTTTTAGACATGCAGACTAATGTGGCTCGAGACTATGTCAGCAAACAAGAAGACGGTGACGAAGATGAAGATGATGCAGAGGCAGTGCAGGAGGTGAAGAATAACTCTGCTGATACTGATGAACGCAGGCGCAGAGAGCAAGAGGAATCTGCAGCAGCTGCGGCAGCTGTCGAGACAGTAACTGCAATTGCAGACCCTTCCGAACCAATGGACATGCAGCCTTTACACGTTGAGGACAAAACTGTTCTCATGATGGGGGCTGAGCACTCACACCAGCATCCAGACTTTAAAGATGACCTGAGCCACCAGCAACATACACATCACCACAGTAGTGAGCTGGATCTGGAAACTGTGCAAGCTGTCCAGTCACTCACACAAGGTGAGGCCCAGGAGGAGGATGCAGAGTCCCATGAAGCCTACCAGGACTGTGAGGAGACTCTGGCTGCCTGTCGAACCCTCCAAAGTTACAGTCATACAGGTGAAGGTGAGGAGGAAACTCTAGCCTTAGTGGAAGAGTGTGGAGCCTCCCAGCATAGTCCCATGCCCAACCCACCAATGCCCACATTACCGAACCAGTCTGTCCGTTCAGTCAACAGTCCTGCACTGACTCCAGGTCCTATGGAGCCTGGGCCAGGGGTGTCGGGTCCCACAGGAACTGGAGGGGGAACAGGAGGAGGCTATACCCAAATAACCCCAGAGCATCCCAGCTCTCTGTCAGCTCCTTCTTTGCAAAACATGGAGACCTCCCCTATGATGGACGTACCATCAGTTTCTGATCATTCACAGCAAGTTGTAGACAGCGGCTTCAGCGACCTAGGCAGCATTGAGAGCACCACCGAAAACTATGACAATCCAAGCAGCTATGACTCAACTATGGGTGGTGGAGGAAATGGAGGAGGGAATGGAAGTAATGGAGGTGGTATGTCAGCTGCCACCGCAGCAGCGGTGGCTGCTTCCTctacatcatcttcatcatcttctaGCTCAGCTACACCATCATCGTCATCTTCACAAGGCAACAGCTGCTCCTTTGTCTCAACTCCTGGGTTGACATCCTCGAGCACAGGTGTTGGCTCTCAAATCTCCATGGGAAGTTGTAGCCTTATCCAGCAAACAGGTCCTGGCACAACCAATGGACCGGGTTCTAACAGTACTGGTGGTGTCCCGCAACCTCCACCCCCACCTCCTCCTACTTCTGCCAGCACTCCAACTTGCGGTATAAAGTCTCCACAAGGCTGCGTCATAGAAAGGCCACCAAGTGCCAACCAGCAGCAACAAAAAAAGGTCTCGCAACCccctcaacaacaacaaaaccctCAACCACAGCCTCCACCCTCTGCTCCACCACCCCCTCCACCTCAACAGCAAGCCCTCTCACAGTGCAGCATGGGAAACGGCTTTGCTTCCATGCCCATGATTATGGAGATTCCTGAAAGTGCAGGCAGCGGTGGAGGAGGTCGGAGTTTGTATGATCGAATGGGCCAGGACTTCGGTGCTGGTGGTTACAGTTTAGCCAAACTCCAGCAGCTAACAAACACTATCATGGACCCCCATGGAATGTCTTATTCGCATTCAGCTGCAGTCACCTCATATGCGACAAGTGTTTCACTGTCTAACCCAGGGTTAGCGCAGCTTGCTTCTTCTCCACACCCACCTTTGGGCCAGGCTCAGCCCACAATGACTCCACCTCCCAATTTGGGTTCTGGGTCTATGAACCTTGGGTCTCCCTTAATTCAGTGCAACATGACGGGCGCTAACATCGGACTACCTCCCACTCCCCATCCACAACGGTTGCAAGGCCAAATGGCCACCGTCAAAGGCCACATTGCAATCCGGTCCAAAGCCTCTCAAATACCTGCGGGCTCCCCTCACCAGCAGCAATTGTACAGTCGCAGTTCTGGCGCTGTGACCATGCAGGGCTCCCCACGGACTCTAGTTCAGCGTGGCATGATGACCAACCTCATGCCCACACCTGCCGCCTACAACTCAGTGAACATGAATCCACTCAATGCTGCCATGTCCGCTGGCTATCGCATGTCACAGCCAATGATGAACAGTGGGTACCACAGTAACCCGCCCTATATGAACCAGCCAGCCCAATACCCCATGCAAATGCAAATGGGAATGATGGGAGGGCAGGCTTACCCTCAGCAGCCTATGCAGCCCAATCACCATGGCAACATGATGTACACGGGCCCCTCGCACCACAGCTACGCTGGCGTCCCCAAACAGTCGCCTTACATGAGCAGATGAGCACCAGAGAATGAGCAGAGAGCTGAGAGACGTACCCCACCGGACTCTGCATCTCTGTACTTAATCCATTTGTATCCACCCTCCAACGTCTGGGCAAAAAGGCAACAAGTGAGCTTGGTGGAGGAAGAGGACATAGAGACTGCGACAAATTCTTTTCCTTTCTAAATATGTTGTCGTCAAAGCTCTGTTCCTTTTAGGTTCATTTCCCCAATGCTGACAGAGCTGGGGAGTTGATGATAGCCTGATCAGGGAGATGATCTAGTGGACCTTTATTACGGCAAGTGTCATGCTCCCACCCACAGACCCTGTCTGTCATGGTTGTACCAACAAGGGTTGGTCCACCAAAATGTCCTCCACTCCATTCGTGAGACAGGAGCGAAGCATCAAAGCAGTTACAGGGGAAGTGGACCTAACTTTTCaaactgagagagaaataaatTTACGTCGTTAATGAACATACATTGAATCATGCACACAATCGTTCAATTGACATAGGAAGCCTTACCTAAAAAGAGACAAAATAATTGTagatggactttttttttcttttttattatattattattattattttctttatttttaatatgttcttttttttccaaTGACTGTTGAAATGCTCGTTTCAGTCTGACCTTCTCATGCTTTATGTGTGTGGCTGTACTGGACAAAGTGATTCACGCTCGCTcattcatacactcattcactcacacacagctACATAGCCACTTGAGAGCTCACCTGGAGGCACTTGTCGGGACGCACCGTGTCCGATTTTTCTGTAAATCTGTGTCTTCCCAGTATGGAACCATGTATATCCAGTGTTAAGAGCTCAAACAAGCATCTCATAATAAACACCACGCATCCATAGACCGGACCCAACAATAGTTAATGTAAATATTCTGGTACTACCTGGTTCAC

Function

symbol description
kat6a Enables histone acetyltransferase activity. Acts upstream of or within several processes, including embryonic body morphogenesis; neural crest cell fate specification; and skeletal system morphogenesis. Located in chromatin. Is expressed in head. Human ortholog(s) of this gene implicated in Arboleda-Tham syndrome and acute myeloid leukemia. Orthologous to human KAT6A (lysine acetyltransferase 6A).

GO:

id name namespace
GO:0006334 nucleosome assembly biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0048513 animal organ development biological_process
GO:0009880 embryonic pattern specification biological_process
GO:0001502 cartilage condensation biological_process
GO:0051216 cartilage development biological_process
GO:0010172 embryonic body morphogenesis biological_process
GO:0043966 histone H3 acetylation biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0016573 histone acetylation biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0014036 neural crest cell fate specification biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0048703 embryonic viscerocranium morphogenesis biological_process
GO:0048706 embryonic skeletal system development biological_process
GO:0000786 nucleosome cellular_component
GO:0070776 MOZ/MORF histone acetyltransferase complex cellular_component
GO:0005634 nucleus cellular_component
GO:0042393 histone binding molecular_function
GO:0016740 transferase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003712 transcription coregulator activity molecular_function
GO:0003713 transcription coactivator activity molecular_function
GO:0004402 histone acetyltransferase activity molecular_function

KEGG:

id description
ko04550 Signaling pathways regulating pluripotency of stem cells
ko03000 Transcription factors
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-021022-3 Enables histone acetyltransferase activity. Acts upstream of or within several processes, including embryonic body morphogenesis; neural crest cell fate specification; and skeletal system morphogenesis. Located in chromatin. Is expressed in head. Human ortholog(s) of this gene implicated in Arboleda-Tham syndrome and acute myeloid leukemia. Orthologous to human KAT6A (lysine acetyltransferase 6A).

Ensembl:

ensembl_id ENSDARG00000018907

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00060089 True 7796 mRNA 0.51 16 14394323 14443124

Neighbor

gene id symbol gene type direction distance location
XLOC_030907 ap3m2 coding downstream 3878 14375108 ~ 14390445 (-)
XLOC_030906 tet3 coding downstream 20661 14306475 ~ 14373662 (-)
XLOC_030905 CR388049.1 coding downstream 149043 14245149 ~ 14245280 (-)
XLOC_030904 npffr1l2 coding downstream 155245 14165567 ~ 14239078 (-)
XLOC_030903 figla coding downstream 546027 13839316 ~ 13848296 (-)
XLOC_030909 si:ch211-244o22.2 coding upstream 34158 14477282 ~ 14522712 (-)
XLOC_030910 sema4c coding upstream 85977 14529101 ~ 14648433 (-)
XLOC_030911 NA coding upstream 337718 14780842 ~ 15176098 (-)
XLOC_030912 NA coding upstream 556498 14999622 ~ 14999996 (-)
XLOC_030913 CR936518.1 coding upstream 743699 15186823 ~ 15215784 (-)
XLOC_030896 AL954191.1 non-coding downstream 861335 13532874 ~ 13532988 (-)
XLOC_030893 NA non-coding downstream 1087618 13277241 ~ 13306705 (-)
XLOC_030888 NA non-coding downstream 1557716 12835526 ~ 12836607 (-)
XLOC_030881 BX276096.2 non-coding downstream 2027998 12366209 ~ 12366325 (-)
XLOC_030915 NA non-coding upstream 864415 15307539 ~ 15310108 (-)
XLOC_030920 BX649391.1 non-coding upstream 1291401 15734525 ~ 15734580 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000071_03857495_03897333 KAT6A coding CI01000071 null 3857495 ~ 3897490 (+)