XLOC_030910 (sema4c)


Basic Information

Item Value
gene id XLOC_030910
gene name sema4c
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 14529101 ~ 14648433 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00060093
TACACCATGTTGACCCTGGCAGAACACGAGAGGGTTTTGTATGTGGGCGCCAGAGAGAACATCTTCGCCCTGGATCCCAACGACATCAGCAGACAGCTCCGACCACAGATTGAGTGGTCTGCTCCtgcagaaaagaaaaaagagtGTGCAGCGAAGGGGAAGAATAACCAGACTGAGTGCTTCAACTACATTCGCTTCCTGCAGAGCTACAATCACACGCACCTGTATACATGCGGGACGTACGCCTTCCAGCCCAAATGCACCTACATTAATGCAGATCATTTCACTCTGGATAGCGCCGCCCTGGAGGACGGCAAGGGAAAGTGCCCTTACGACCCCGCCAAAGGTCATACAGGCCTCATTGTGGACAAAGAGTTGTACTCCGCCACCCTCAATAACTTTCTGGGCACCGAGCCCGTAATCCTGAGGAACCTGGGACAACAGCATTACAGCATGAAGAGTGAATACCTGCCGGCCTGGCTCAACGAGCCAAACTTTGTGGGTTCGGCGTTGGTCCGGGAGAGTCGCAACAGTAAAGATGGAGATGACGATAAGATCTACTTCTTCTTCAGCGAGAGAGCGGTGGAGCTGGACTGCGACAGTGATCTGACTGTGGCGAGGGTGGCACGGGTGTGTAAGGGCGATCTGGGTGGCACACGGACCCTGCAGAAGAAGTGGACCACCTTCCAGAAAGCTCGGCTGATGTGCTCTTTCCCAGAGCGCCACATCACCTTTAATAACCTGCGGGCCGTCTTCACCCTGCCTGGGGCTGACTGGAGGACTACTAGTTTCTACGGCATATTCCATGCACAGTGGGGGGACGTGGATGTGTCTGCTGTGTGTCAGTACCAGATCGGGGAGGTGAAAAATGTGTTCGACGGGCCGTATAAAGAATACAGGGAGTCGTCTCAGCGATGGGGCCGTTACACTGGCACTGTGCCCAGTCCACGACCTGGAGCGTGCATCACCAATTTTGACAGGGAAAATGGCTACAACAGTTCTCTCCAGCTGCCTGACGCCACGCTCAACTTTGCCAAGAAGCACCCGCTGATGGAACTCAGGGCTGAAGCTCGCCCTCTGCTGCTGACTAAAGGCATCAACTTCACCCGATTGGCTGTGGACCGAGTGAGCTCACTGGACCAGAGATCCTACAACATGCTCTTCATAGGCACAGCGGACGGATGGCTCCAGCGTGTGGTGATTTTGGGTTCAGAGGCTCATGTGATAGAAGAGATCCAGCTGTTTGATCGACAGCAACCGGTGGACAGCCTCACCGTCTCCCACAGCAAAAAGTATTTGTACATTGGCTCCAGGTCTGAAGTTCTTCAGCTGCCCTTGGCAAACTGCAGCCGGTACCATTCACAGCCAGACTGCCTGCTGTCCAGAGACCCGTACTGTGCCTGGGACAGCGAGGGACGAGCTTGTGTCCGCATCGACCTCCATCGCGGCTCCACATCCACACTCTCGCAGGACCTCATGCTGGAGAGGTTCAACCGAGGAAAAGCCAAGTTTGATAAGCCTTTCTCCATCCCCAGTCCTGGTACGTTAAGAAATGTGACAGTGGTCGTTGGCTCAGATCTGGTATTGCCCTGCAATCTTGTTTCTAACTTGGCCCAGCCTTTCTGGGAGCTCAACGAGCGAGAGCTTGCTTTGGTGGAAGGAGAAGCCATTGGGCCACGATTCGACCGGGCGCTCCGTGCCCTCGTCATCCCTCAAGCCGGATCTCTTCAAGCAGGCCGTTACATCTGCTACTCGGAGGAGCAGGGCGTGAAGTTCCAGACTGAAAGATACCAGGTCGCAGTGGTAGCCAGCGCACCTGTCTTCATGGAGGCTCGAGCTCCAGACGGCAGCATGGGTTTATTCTGGGTGCTGGTGATCACCTTAGGTGCTGCTTGTCTGTTGCTGCTAATTGCATCTTTGTACCTTCGAAGAAGATTGAAGTTGGCATTGGGCAAGGGGGCGGAAATGAAGCCACTGGAGAGCACTCTGGTATACCCCATTACCTTGCCCAAAGAGCCTCCCAGCAGGCCATCCTTTGTGCCAAGCAGGATGGCAAACGATGAGGATCGCTTCTGGGAAACGGGAGCTAATTACTACTGCTCAGACGGCTCCCTAAAAATCGTTCCTGGCCACGCAATGTGCACCACTGGAAGTTCAGCATCTCCAAGTGCCATTCCGGGTCAGCCAATTCACTCGCCGAGCAGGCTGAGCCTCACCAACATTCGAAACTCAAGCACTAATGGATACATTCGCTTGAATCTGAGCACGGCCGGAGAGGAGAGAGCGAGTACGGGAGCAGGAATGGGCATGGGAAGCGGACTCGGATTGGGCAGCCGAGAGAACGATTACTCCAGTCCGTTCAAAGAGGAGCTCCGGAGAACTCTGCAACAGAGGAGTGTGCTTCCTGATGCCAATCCCGAGGAGTCTTCTGTGTAGATCTCACAGGAACCACAGGAAACCTCACCTACCTCCCTCCTGCTTGGGGAACTCTCTTCATTTTACTCAACAAACCCGCTTCTACTCTGTCAACTCTTGGCGAACATCTCCCGTGCCATAAGGCCACCGTGCTTCAAAACATTCCCTTTGGATTATTCCGGTTCTCTTGTGTACTCAACCGAGACTGAACACAACTCGCGAAGCTTTTGTAAATGTCTGTATTTAAAAGGACCAGACCGACAGGGCCTTGTGTTGATCTTGGCTAACAGGCGAACACAGGTACATCTCTGAGAGGAACCCAAATAGCCGAATGTAGCTGTCAGTTTGATCTGCGTAAGGCGGACATCTGGCAACGGATACTTATCATTTGGCAAGCTGGAGGATACAGAACCTATTTTTGACGTCCAGAGGTTGCTTGCCTCGGTTAAAGCAGGTGTTTGGACATTTTTTTTGTATGGGTAAAACGCATGAGAGGAGATGAAGAGGACATGAACTTAAAATCGCAAGATGACAATCACGCTCTACTCTCATGAGGATCCCAGAGGGAAATTATTCAAGAGGCGAGAGAGGGGAAAAACAATTGTGAGCTGTAAAACCGAAACAGGACTTGAATAATGAACAAATGctttgcctttcttt
>TCONS_00060094
GACAAATGCTTCACTCCATCTTATTATGATGATATTCCGGCTCCGTTCCCGCACAGGACAGGGGATATTGGGGCGGAGACCTGTTTGTACTGCTTTTGTGAGGTACCGGTCCGCCTCATCGCTTTCCCGATACCCATCAGGAGGCAGTAGATCCTCCAGTGCagtttgtgtgagtgagtgtgtgtatgtgtgtggcgCTTCCCATCCGCTGTAAGCACCTTTGTTTCTCTCGGAGAGCTTCACTTTAACAGGGGCGCGGGGTTCAAGTTGCTGAGACGGAGGGGGACCGCTTTGAAGAAGTGGATCTGGACGGGTTTAATACACCCTCCTCCCTCTCCAGAACTACTACTACAAAGGGAGTGAACGGAGAGAGTTCCGCTGCGTAAACCGACACCGACCATCGCGCCGCTCGCTCGCTGGCTCACTCGCTCTCCTGGCCGTCAAGAAAAGAAAAAGCATGCGGGAAAACGCAAGGAGCTGATCTTTCTTTGGAAAATGCTGGATTTGTTTGGGCTCGTTTTGAAAATGCTGATGTTGTGAGACCAAACGCTTTGTGCGTTTTCGTGCGTTTTTGGACGCGCTGACAGCCCGTGAGCGTTACGCACTGAGTCGCCAGAGGAGCCGTCGTGCGCATCTGGAGCCTCCACACCAATCAGAACCCCCTGCTTCCTCATCCAATCAGAGCCCTGTAAAAGGAGAATAGAAATGGGGTGTGCGAAAGTTCTCCTTGTGATCTTCGTGATCGGCTTTGAAAAGGGGATCTGCGTCAACTGGAACCCCGTCCCACGCaagactgtaaaatataatgATGTGCATGACAGTATGGCGAGGTTTCGTGCTGTCGGGGTGTGGAACTACACCATGTTGACCCTGGCAGAACACGAGAGGGTTTTGTATGTGGGCGCCAGAGAGAACATCTTCGCCCTGGATCCCAACGACATCAGCAGACAGCTCCGACCACAGATTGAGTGGTCTGCTCCtgcagaaaagaaaaaagagtGTGCAGCGAAGGGGAAGAATAACCAGACTGAGTGCTTCAACTACATTCGCTTCCTGCAGAGCTACAATCACACGCACCTGTATACATGCGGGACGTACGCCTTCCAGCCCAAATGCACCTACATTAATGCAGATCATTTCACTCTGGATAGCGCCGCCCTGGAGGACGGCAAGGGAAAGTGCCCTTACGACCCCGCCAAAGGTCATACAGGCCTCATTGTGGACAAAGAGTTGTACTCCGCCACCCTCAATAACTTTCTGGGCACCGAGCCCGTAATCCTGAGGAACCTGGGACAACAGCATTACAGCATGAAGAGTGAATACCTGCCGGCCTGGCTCAACGAGCCAAACTTTGTGGGTTCGGCGTTGGTCCGGGAGAGTCGCAACAGTAAAGATGGAGATGACGATAAGATCTACTTCTTCTTCAGCGAGAGAGCGGTGGAGCTGGACTGCGACAGTGATCTGACTGTGGCGAGGGTGGCACGGGTGTGTAAGGGCGATCTGGGTGGCACACGGACCCTGCAGAAGAAGTGGACCACCTTCCAGAAAGCTCGGCTGATGTGCTCTTTCCCAGAGCGCCACATCACCTTTAATAACCTGCGGGCCGTCTTCACCCTGCCTGGGGCTGACTGGAGGACTACTAGTTTCTACGGCATATTCCATGCACAGTGGGGGGACGTGGATGTGTCTGCTGTGTGTCAGTACCAGATCGGGGAGGTGAAAAATGTGTTCGACGGGCCGTATAAAGAATACAGGGAGTCGTCTCAGCGATGGGGCCGTTACACTGGCACTGTGCCCAGTCCACGACCTGGAGCGTGCATCACCAATTTTGACAGGGAAAATGGCTACAACAGTTCTCTCCAGCTGCCTGACGCCACGCTCAACTTTGCCAAGAAGCACCCGCTGATGGAACTCAGGGCTGAAGCTCGCCCTCTGCTGCTGACTAAAGGCATCAACTTCACCCGATTGGCTGTGGACCGAGTGAGCTCACTGGACCAGAGATCCTACAACATGCTCTTCATAGGCACAGCGGACGGATGGCTCCAGCGTGTGGTGATTTTGGGTTCAGAGGCTCATGTGATAGAAGAGATCCAGCTGTTTGATCGACAGCAACCGGTGGACAGCCTCACCGTCTCCCACAGCAAAAAGTATTTGTACATTGGCTCCAGGTCTGAAGTTCTTCAGCTGCCCTTGGCAAACTGCAGCCGGTACCATTCACAGCCAGACTGCCTGCTGTCCAGAGACCCGTACTGTGCCTGGGACAGCGAGGGACGAGCTTGTGTCCGCATCGACCTCCATCGCGGCTCCACATCCACACTCTCGCAGGACCTCATGCTGGAGAGGTTCAACCGAGGAAAAGCCAAGTTTGATAAGCCTTTCTCCATCCCCAGTCCTGATCATTCAAGGTTAAGAAATGTGACAGTGGTCGTTGGCTCAGATCTGGTATTGCCCTGCAATCTTGTTTCTAACTTGGCCCAGCCTTTCTGGGAGCTCAACGAGCGAGAGCTTGCTTTGGTGGAAGGAGAAGCCATTGGGCCACGATTCGACCGGGCGCTCCGTGCCCTCGTCATCCCTCAAGCCGGATCTCTTCAAGCAGGCCGTTACATCTGCTACTCGGAGGAGCAGGGCGTGAAGTTCCAGACTGAAAGATACCAGGTCGCAGTGGTAGCCAGCGCACCTGTCTTCATGGAGGCTCGAGCTCCAGACGGCAGCATGGGTTTATTCTGGGTGCTGGTGATCACCTTAGGTGCTGCTTGTCTGTTGCTGCTAATTGCATCTTTGTACCTTCGAAGAAGATTGAAGTTGGCATTGGGCAAGGGGGCGGAAATGAAGCCACTGGAGAGCACTCTGGTATACCCCATTACCTTGCCCAAAGAGCCTCCCAGCAGGCCATCCTTTGTGCCAAGCAGGATGGCAAACGATGAGGATCGCTTCTGGGAAACGGGAGCTAATTACTACTGCTCAGACGGCTCCCTAAAAATCGTTCCTGGCCACGCAATGTGCACCACTGGAAGTTCAGCATCTCCAAGTGCCATTCCGGGTCAGCCAATTCACTCGCCGAGCAGGCTGAGCCTCACCAACATTCGAAACTCAAGCACTAATGGATACATTCGCTTGAATCTGAGCACGGCCGGAGAGGAGAGAGCGAGTACGGGAGCAGGAATGGGCATGGGAAGCGGACTCGGATTGGGCAGCCGAGAGAACGATTACTCCAGTCCGTTCAAAGAGGAGCTCCGGAGAACTCTGCAACAGAGGAGTGTGCTTCCTGATGCCAATCCCGAGGAGTCTTCTGTGTAG

Function

symbol description
sema4c Predicted to enable chemorepellent activity and semaphorin receptor binding activity. Predicted to be involved in several processes, including generation of neurons; neural crest cell migration; and semaphorin-plexin signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular space. Predicted to be integral component of plasma membrane. Is expressed in several structures, including axial mesoderm; brain; lens placode; olfactory epithelium; and solid lens vesicle. Orthologous to human SEMA4C (semaphorin 4C).

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0001755 neural crest cell migration biological_process
GO:0050919 negative chemotaxis biological_process
GO:0048843 negative regulation of axon extension involved in axon guidance biological_process
GO:0007411 axon guidance biological_process
GO:0030335 positive regulation of cell migration biological_process
GO:0071526 semaphorin-plexin signaling pathway biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0005615 extracellular space cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0045499 chemorepellent activity molecular_function
GO:0030215 semaphorin receptor binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080303-16 Predicted to enable chemorepellent activity and semaphorin receptor binding activity. Predicted to be involved in several processes, including generation of neurons; neural crest cell migration; and semaphorin-plexin signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular space. Predicted to be integral component of plasma membrane. Is expressed in several structures, including axial mesoderm; brain; lens placode; olfactory epithelium; and solid lens vesicle. Orthologous to human SEMA4C (semaphorin 4C).

Ensembl:

ensembl_id ENSDARG00000079611

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00060093 False 3075 mRNA 0.53 13 14529101 14564878
TCONS_00060094 True 3297 mRNA 0.54 15 14529740 14648433

Neighbor

gene id symbol gene type direction distance location
XLOC_030909 si:ch211-244o22.2 coding downstream 6389 14477282 ~ 14522712 (-)
XLOC_030908 kat6a coding downstream 85977 14394323 ~ 14443124 (-)
XLOC_030907 ap3m2 coding downstream 138656 14375108 ~ 14390445 (-)
XLOC_030906 tet3 coding downstream 155439 14306475 ~ 14373662 (-)
XLOC_030905 CR388049.1 coding downstream 283821 14245149 ~ 14245280 (-)
XLOC_030911 NA coding upstream 132409 14780842 ~ 15176098 (-)
XLOC_030912 NA coding upstream 351189 14999622 ~ 14999996 (-)
XLOC_030913 CR936518.1 coding upstream 538390 15186823 ~ 15215784 (-)
XLOC_030914 gnb1l coding upstream 573578 15222011 ~ 15283509 (-)
XLOC_030915 NA coding upstream 659106 15307539 ~ 15310108 (-)
XLOC_030896 AL954191.1 non-coding downstream 996113 13532874 ~ 13532988 (-)
XLOC_030893 NA non-coding downstream 1222396 13277241 ~ 13306705 (-)
XLOC_030888 NA non-coding downstream 1692494 12835526 ~ 12836607 (-)
XLOC_030881 BX276096.2 non-coding downstream 2162776 12366209 ~ 12366325 (-)
XLOC_030920 BX649391.1 non-coding upstream 1086092 15734525 ~ 15734580 (-)

Expression


Co-expression Network