XLOC_030921


Basic Information

Item Value
gene id XLOC_030921
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 15813775 ~ 15817557 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00061964
cagccgaaaaatctgcagcaactgcgtgatgctactatgtcaatatggaccaaaatatttccagtatcttgttgaatctattccaaaaaggattacggcagttctgaaggcaatagGAGGttcaactcggtactagtaaggtgtgatAAAATGGTAGATGAGTGtactttaaacacaaatgaacatttcAGTTTCAATTGATAATATGACTACTAATAATAGGCCTTTCCTGTTGATTgagtcacataaaaaaaaataaagtacttCATATTAGTTTACCGACCCCCCCACCTCAACCACACACCCCAAATCACAAAAACAaggagataaaaaaataaataagccaaATGTTAGGTGAATAATTTATTTAGAACTCTTTGAATATCATTACAGATTGAGACCACAGAGAACTAGAGCAAGGGAGACACTCATATCCTTGTGCACATAGACAACATTGTATATACATTGTAGAATAGGAGATCATGGGGAACGCTCTTCCAGCCTGCGTCTTGCATTAAAACGCTAAAACAAAGACACGCGAGCATTTTATCCGCTCATTCTGTGCAAAACTAAATCTGTTACTGCTATTACAGGATATTGCAATCACAGAAGCTGATAGCAAACTCTGTAGCATGTTCTGACTTTAATTTCGTCAAATAGCCTAAATTCATGGCAACATTTCAGCACGTTTGGCTTTTACAGGGAATGCAAATGAGAAAGCCAGCCTTGTAAACAGTCAGTACCGCTACTCCATCTCAATACATAAAGCCCATGCCTAACATTGCCGCACTAAACGTTTGCATATTTACACGACAGATTTACATAATCACTCGTTTACGCTTCGAGATGAGAGCACAAGATGAATTCCAGAAGATGAAACATTTCGCGAAACGCTTTAAGTTTTTCCCCGTGTCAATCTACGGCTAATTATCTGTACAAGAGTCAGGATTCACAACAGTCAGACAGCTAATAATGTACAGTGCATAGAGATCACCATGCCTTCCATTAACAAGCACTCAGATAGACTTGATGACACGGAAACAAAGAAACTGCCACCATCCGTCGTGATGAAGGTGAGGATTTTTACACGGCGTTTCATCAAGCTGCATCGCACCCCAAATAGAAAACTTTGATCATTCCAAACAAAAGTCCTTGATCTCGCCACTTTGACTGATTTCTTTTGACAGCCGTCTTCATTTCTTCCAGTCTGTAACAGTTTCTCTGTTGTTGCTTTGACGTGCAACcatatgcatttttaaacattCGCATTTTTAAATATCACCATCATTTATGCTGAAGTATGATTTAAACTAGCGCAGGGCTGATTTTTAAAGTGCTTCTATTATGCTCTTttgtatatacagtagtcaacatttgaagtggatgaaAAACCAGTACTGTATTACTGACtttctaaataatttataatcaaattaaatcaacaaAATTTCTTTTGACACAACAaagatggcaaagaaaaaaaagaaagcatttaGATAAATGAACAGTTTATTTGTAAATTGACTGTTTAACGAGATGAAGGAGGTGGCATAactgcaatgaaattaataatagAAATGCCATGAGATTTAAAACTAAAACCGCCAGTAGGTGGAGTCAAGTCTCCATCtctgtcattagctatgtttccatccaaaaatgcgaataaactttatgcgcaaaactggattatcgcgaCTATCgcaagttgtgcgaatgaagcatcgtttccatccaacgagtcaaagcgaacaaaatggTCACAtttgcaaaatgcacataaaataggtggatggaaacatagctattaaataatttaatttagttgttccaacagctgattcattcacaaatgtctttttgaatggatgaatgaagacCATtatggaaaattaccggcaatgtctgtatgtgtgagcagacctttttgaaaatactattaaaTTCGTTtaggcaattttccggaaagagatgttgtaacattaccagtaatttgccagaatgctgcgctgtgtggatgcagaaggaaaattgccagaaagagTGTGTTCAAGTCTAGAACgagctgacgtgagacgtctactttagccaatcagaacactcagacgcattcacatctgcgCGGTTTCTGAAAATataagcctttgaatatttttccagacacattaagCTGCTAgttgttatgctgcgttcacgCCAGATGAGGAAGAAACGCCAAGCGCGAGTTATTTACATGTTACATCgatgcaaagatgcgaatagacatcctgcggtgcaatACAAGCGAACGTCGCGGCACGAATAGAGCGTTTTGTAcgtctgaacttcagcagacatttgcaTAGCCTTAACCAATCAgcagctttctcttgtaggggcttGCTTATGACATAGCGCCTGTTATTGGTGTCCAAGAGAGTAATCTTCCAgtcgacaccggacaacagttcatcaaactgggcttggctcagtcggaagcactgctgaaagcctccaccATCTAGGTtaatttctggaggagtttatgagctcatagagcttggtgcacctctgaaaggatttagtggactcagacactgctccaaatgaatcaacgctgtttttcagccttcataaagcacataaacacagctattgtcTCAATAAAATCcgtgttagccatttagcaacgaagctacattcaccgggcagacagaagccctgctcatTGCACGAATACGGgtttgttctgaagtgaatttgacgtgcgagTAAAGCGGATTTGAAAGCATTATGAtccgaaccaggctatatcaaaGTATATTATGGATATAAAATaggcatatacggctatatgaaggaagaattttgaaaaataaaccctgaaattAATGTGAGAAGAGTTTACTTGCATGtggcttgttttagctcttttgctttgtttagaaactttgccgtgtgaaagcgaacaaGAGCATCAAGAGCAAagtgcaacaatgtaacaatttgaatccctgtttcggaacataGGAATCggtctacaggtgtgaaagcaaccttagacattttgaaaatcatgcaAAATGACACAATGAACTGTATTGCGCTTGTGAGTGGTGCCTTATTACAATACTGAGTATTAATTGGTCAATCGTCAAAAagtcataaataatcataaatagatcattttaatatttattttgcattagtTTTACATTACACATTGTTGTTAATCTAAAGGGGATGGTAAGGGGGGATGGTGGTTTTACAAAGAGGATGCTTTTTGTAATTTTTCCTTAAGGCCCGCATCCCCCTGCATCCCCAAGTGGAAGTGTCATCAGACGGTATTACTAGCTCAGCTCTAATGGTTTTTGGGTTGCCAGGAATTTATCCAGAGATAAATGCCCATTAATAAACCATTCAACTTTCGCTTTGAGTTCACaagaaagaaacatttttgtGGCATCGGCACAACTGCGCAGTCATTTGTACGCAGATGCGCCGACCGCTGTTTGTGCA

Function

GO:

id name namespace
GO:0001704 formation of primary germ layer biological_process
GO:0001706 endoderm formation biological_process
GO:0060350 endochondral bone morphogenesis biological_process
GO:0036342 post-anal tail morphogenesis biological_process
GO:0009888 tissue development biological_process
GO:0060429 epithelium development biological_process
GO:0007369 gastrulation biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00061964 True 3498 lncRNA 0.39 2 15813775 15817557

Neighbor

gene id symbol gene type direction distance location
XLOC_030920 BX649391.1 coding downstream 79195 15734525 ~ 15734580 (-)
XLOC_030919 CR384085.1 coding downstream 121745 15690639 ~ 15692030 (-)
XLOC_030918 CU694999.1 coding downstream 288993 15523008 ~ 15524782 (-)
XLOC_030917 taok3a coding downstream 319478 15359995 ~ 15494297 (-)
XLOC_030916 txnrd2.1 coding downstream 463523 15311591 ~ 15350252 (-)
XLOC_030922 si:dkey-1k23.3 coding upstream 23966 15841523 ~ 15851953 (-)
XLOC_030923 xbp1 coding upstream 126854 15944411 ~ 15948920 (-)
XLOC_030924 coq5 coding upstream 310657 16128214 ~ 16139600 (-)
XLOC_030925 kremen1 coding upstream 334387 16151944 ~ 16274058 (-)
XLOC_030926 NA coding upstream 461683 16279240 ~ 16351306 (-)
XLOC_030915 NA non-coding downstream 503667 15307539 ~ 15310108 (-)
XLOC_030913 CR936518.1 non-coding downstream 597991 15186823 ~ 15215784 (-)
XLOC_030911 NA non-coding downstream 637677 14780842 ~ 15176098 (-)
XLOC_030912 NA non-coding downstream 813779 14999622 ~ 14999996 (-)
XLOC_030927 NA non-coding upstream 535440 16352997 ~ 16356940 (-)
XLOC_030930 CR450719.1 non-coding upstream 627792 16445349 ~ 16445465 (-)
XLOC_030933 CR392021.1 non-coding upstream 1081366 16898923 ~ 16899047 (-)
XLOC_030934 CR759970.1 non-coding upstream 1223064 17040621 ~ 17041288 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G33015 NA misc NC_056703.1 CM032072.1 3605186 ~ 4144396 (+)
mexican tetra (Astyanax mexicanus) G36114 NA non-coding NC_035900.1 CM008303.1 13006516 ~ 13011012 (-)