XLOC_030923 (xbp1)


Basic Information

Item Value
gene id XLOC_030923
gene name xbp1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 15944411 ~ 15948920 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00060114
AATTAAGGCGATTTTTTTCGGAAATTTCCCACCCCTAATCAAAACAGAAGGGGTCTCAACACAGATCCTAATCCAGACAACCACACAAAAATGGTCGTAGTTACAGCAGGGACCGGAGGAGCCCACAAAGTCCTCCTGATATCGGGAAAACAGAGCGCTTCGACCGGCGCGACACAGGGCGGGTACAGCCGCTCAATATCTGTCATGATACCGAATCAAGCCTCTTCAGATTCAGACTCCACCACCTCTGGACCACCACTGAGAAAACGACAGAGACTCACACATCTGAGCCCAGAGGAAAAAGCACTTCGAAGGTGAGGCGAGCTCGGATTTATTTTGACAAATGTGTTAATCTTCTAGCGTGCTTCGTTCAAAACGAGATATCTTTATCAGTGCGCGAATGTTTAACGTTACTTTTATATATAGACTGTCGAATTTGTACGTTTCAGGAATGCTAACGCTTTAAACGAACCAGTTTGACCCTTCCATATGGAAGACTTTGAATCCCTGCCAAGATCAGTGGGTTTTGCCGGTCAGTCCCTCCCCCTCTGAATCAATATACTCACATCTGCCTGCGTGGCAGGAGCGAGACCGCGCATGCGCCATTTCCTCAACACTCTTTCAGCCCTGCCAAAATGGATTGCATAATAATAAACCTGGTTCAAATAACAATGtagaaaatgaataaactgaaatTGTATAGTCACTGTATCATGTCCcagataaaaatgtatttattttctagctataaatgtaaaaaataaataataatcataataatcatgtttttttttgttttgttttttaggaaatTAAAGAACAGAGTTGCTGCACAGACAGCAAGAGACAGAAAAAAGGCAAAAATGGGGGAGTTGGAACAGCAAGTGCTGGAGTTGGAGCTGGAGAATCAGAAACTTCACGTTGAGAACAGGCTGTTGCGAGACAAGACGAGTGATCTGCTCAGTGAGAATGAGGAGCTGAGACAGAGACTGGGGTTGGATACCTTGGAAACAAAGGAGCAGGTTCAGGTACTGGAGTCCGCAGTGAGCGATTTAGGTTTGGTGACCGGGTCTTCTGAGTCCGCAGCACTCAGGCTACGTGTGCCTCCGCAGCAGGTGCAGGCCCAGCAGTCCCCAAATCTGAAGACTTCACCATGGATACTCACAGCCCTGGCCCTGCAGACTCTGAGTCTGATCTCCTGCTTGGTATTCTGGACATCCTTGACCCCGAGCTCTTCCTCAAGACAGACCTTCCTGAAGCACAGGAGCCTCAGCAGGAGCTCGTGCTGGTGGGGGGTGCAGGAGAGCAAGTACCTTCCTCCGCACCTGCAGCTTTGGGGCCCGCACCAGTTAAGCTGGAAGCCCTTAATGAACTGATCCACTTCGACCACATCTACACCAAACCCGCAGAGGTGCTGGTGAGCGAGGAGAGCATTTGCGAAGTTAAAGCTGAGGATTCCGTCGCCTTCTCTGAAACCGAGGAAGAAATCCAGGTGGAGGATCAAACGGTTTCTGTCAAGGACGAACCGGAGGAAGTGGTCATCCCTGCGGAGAATCAAACTCCAGACGCGGCTGACGACTTCCTGTCTGACACCTCTTTCGGCGGCTACGAGAAGGCTTCGTATCTGACGGATGCATATAGTGACTCTGGATATGAGAGGTCTCCTTCCCCTTTCAGCAACATTTCATCCCCTCTTTGCTCCGAGGGCTCGTGGGATGACATGTTTGCATCCGAACTCTTCCCCCAACTGATTAGCGTCTGAAAGTTTGCATACGATTGCGAATACCGCTTGCCTTTGCTCCTTTATTGTACGTGATTGCCACGTGCAACATAGTGATAATCTGGCAGAAGCCGCAGCATATAATCCTGCCATTTTTAGACCAAAGGCTTTCTGTTGATAAATTGTGAGTCTGTTTGTGCGCAAGACTTTGTTTGCAACTTTATGTACAGTTCAAACGTGACCCAGTATTTTTGTCGGGGGAAGGGGTTTGGGGATAATCGTTTTAAAAGTAGACCTATTTATTTGTACCTCTCCAGAGTTTTCTGTAATGTAATCTAAGATGCTTATTGTAtaactttaattttattgtaaatgcTCTCCTCAAtcataatgcattaaaaaaatttgcATTGCA
>TCONS_00060115
AATCACCGCGCACCACGACGGTAGAAAAAGAACGCTCGCGTTTCTTTCCTTCAGTTTTCAGAGATCTAAGGGGAAGATAATACAAGGAATTAAGGCGATTTTTTTCGGAAATTTCCCACCCCTAATCAAAACAGAAGGGGTCTCAACACAGATCCTAATCCAGACAACCACACAAAAATGGTCGTAGTTACAGCAGGGACCGGAGGAGCCCACAAAGTCCTCCTGATATCGGGAAAACAGAGCGCTTCGACCGGCGCGACACAGGGCGGGTACAGCCGCTCAATATCTGTCATGATACCGAATCAAGCCTCTTCAGATTCAGACTCCACCACCTCTGGACCACCACTGAGAAAACGACAGAGACTCACACATCTGAGCCCAGAGGAAAAAGCACTTCGAAGgaaatTAAAGAACAGAGTTGCTGCACAGACAGCAAGAGACAGAAAAAAGGCAAAAATGGGGGAGTTGGAACAGCAAGTGCTGGAGTTGGAGCTGGAGAATCAGAAACTTCACGTTGAGAACAGGCTGTTGCGAGACAAGACGAGTGATCTGCTCAGTGAGAATGAGGAGCTGAGACAGAGACTGGGGTTGGATACCTTGGAAACAAAGGAGCAGGTTCAGGTACTGGAGTCCGCAGTGAGCGATTTAGGTTTGGTGACCGGGTCTTCTGAGTCCGCAGCACTCAGGCTACGTGTGCCTCCGCAGCAGGTGCAGGCCCAGCAGTCCCCAAATCTGAAGACTTCACCATGGATACTCACAGCCCTGGCCCTGCAGACTCTGAGTCTGATCTCCTGCTTGGTATTCTGGACATCCTTGACCCCGAGCTCTTCCTCAAGACAGACCTTCCTGAAGCACAGGAGCCTCAGCAGGAGCTCGTGCTGGTGGGGGGTGCAGGAGAGCAAGTACCTTCCTCCGCACCTGCAGCTTTGGGGCCCGCACCAGTTAAGCTGGAAGCCCTTAATGAACTGATCCACTTCGACCACATCTACACCAAACCCGCAGAGGTGCTGGTGAGCGAGGAGAGCATTTGCGAAGTTAAAGCTGAGGATTCCGTCGCCTTCTCTGAAACCGAGGAAGAAATCCAGGTGGAGGATCAAACGGTTTCTGTCAAGGACGAACCGGAGGAAGTGGTCATCCCTGCGGAGAATCAAACTCCAGACGCGGCTGACGACTTCCTGTCTGACACCTCTTTCGGCGGCTACGAGAAGGCTTCGTATCTGACGGATGCATATAGTGACTCTGGATATGAGAGGTCTCCTTCCCCTTTCAGCAACATTTCATCCCCTCTTTGCTCCGAGGGCTCGTGGGATGACATGTTTGCATCCGAACTCTTCCCCCAACTGATTAGCGTCTGAAAGTTTGCATACGATTGCGAATACCGCTTGCCTTTGCTCCTTTATTGTACGTGATTGCCACGTGCAACATAGTGATAATCTGGCAGAAGCCGCAGCATATAATCCTGCCATTTTTAGACCAAAGGCTTTCTGTTGATAAATTGTGAGTCTGTTTGTGCGCAAGACTTTGTTTGCAACTTTATGTACAGTTCAAACGTGACCCAGTATTTTTGTCGGGGGAAGGGGTTTGGGGATAATCGTTTTAAAAGTAGACCTATTTATTTGTACCTCTCCAGAGTTTTCTGTAATGTAATCTAAGATGCTTATTGTAtaactttaattttattgtaaatgcTCTCCTCAAtcataatgcattaaaaaaatttgcATTGCA
>TCONS_00060116
AATTAAGGCGATTTTTTTCGGAAATTTCCCACCCCTAATCAAAACAGAAGGGGTCTCAACACAGATCCTAATCCAGACAACCACACAAAAATGGTCGTAGTTACAGCAGGGACCGGAGGAGCCCACAAAGTCCTCCTGATATCGGGAAAACAGAGCGCTTCGACCGGCGCGACACAGGGCGGGTACAGCCGCTCAATATCTGTCATGATACCGAATCAAGCCTCTTCAGATTCAGACTCCACCACCTCTGGACCACCACTGAGAAAACGACAGAGACTCACACATCTGAGCCCAGAGGAAAAAGCACTTCGAAGGTGAGGCGAGCTCGGATTTATTTTGACAAATGTGttaAGTCTTCTAGCGTGCTTCGTTCAAAACGAGATATCTTTATCAGTGCGCGAATGTTTAACGTTACTTTTATATATAGACTGTCGAATTTGTACGTTTCAGGAATGCTAACGCTTTAAACGAACCAGTTTGACCCTTCCATATGGAAGACTTTGAATCCCTGCCAAGATCAGTGGGTTTTGCCGGTCAGTCCCTCCCCCTCTGAATCAATATACTCACATCTGCCTGCGTGGCAGGAGCGAGACCGCGCATGCGCCATTTCCTCAACACTCTTTCAGCCCTGCCAAAATGGATTGCATAATAATAAACCTGGTTCAAATAACAATGtagaaaatgaataaactgaaatTGTATAGTCACTGTATCATGTCCcagataaaaatgtatttattttctagctataaatgtaaaaaataaataataatcataataatcatgtttttttttgttttgttttttaggaaatTAAAGAACAGAGTTGCTGCACAGACAGCAAGAGACAGAAAAAAGGCAAAAATGGGGGAGTTGGAACAGCAAGTGCTGGAGTTGGAGCTGGAGAATCAGAAACTTCACGTTGAGAACAGGCTGTTGCGAGACAAGACGAGTGATCTGCTCAGTGAGAATGAGGAGCTGAGACAGAGACTGGGGTTGGATACCTTGGAAACAAAGGAGCAGGTTCAGGTACTGGAGTCCGCAGTGAGCGATTTAGGTTTGGTGACCGGGTCTTCTGAGTCCGCAGCACTCAGGCTACGTGTGCCTCCGCAGCAGGTGCAGGCCCAGCAGTCCCCAAATCTGAAGACTTCACCATGGATACTCACAGCCCTGGCCCTGCAGACTCTGAGTCTGATCTCCTGCTTGGTATTCTGGACATCCTTGACCCCGAGCTCTTCCTCAAGACAGACCTTCCTGAAGCACAGGAGCCTCAGCAGGAGCTCGTGCTGGTGGGGGGTGCAGGAGAGCAAGTACCTTCCTCCGCACCTGCAGCTTTGGGGCCCGCACCAGTTAAGCTGGAAGCCCTTAATGAACTGATCCACTTCGACCACATCTACACCAAACCCGCAGAGGTGCTGGTGAGCGAGGAGAGCATTTGCGAAGTTAAAGCTGAGGATTCCGTCGCCTTCTCTGAAACCGAGGAAGAAATCCAGGTGGAGGATCAAACGGTTTCTGTCAAGGACGAACCGGAGGAAGTGGTCATCCCTGCGGAGAATCAAACTCCAGACGCGGCTGACGACTTCCTGTCTGACACCTCTTTCGGCGGCTACGAGAAGGCTTCGTATCTGACGGATGCATATAGTGACTCTGGATATGAGAGGTCTCCTTCCCCTTTCAGCAACATTTCATCCCCTCTTTGCTCCGAGGGCTCGTGGGATGACATGTTTGCATCCGAACTCTTCCCCCAACTGATTAGCGTCTGAAAGTTTGCATACGATTGCGAATACCGCTTGCCTTTGCTCCTTTATTGTACGTGATTGCCACGTGCAACATAGTGATAATCTGGCAGAAGCCGCAGCATATAATCCTGCCATTTTTAGACCAAAGGCTTTCTGTTGATAAATTGTGAGTCTGTTTGTGCGCAAGACTTTGTTTGCAACTTTATGTACAGTTCAAACGTGACCCAGTATTTTTGTCGGGGGAAGGGGTTTGGGGATAATCGTTTTAAAAGTAGACCTATTTATTTGTACCTCTCCAGAGTTTTCTGTAATGTAATCTAAGATGCTTATTGTAtaactttaattttattgtaaatgcTCTCCTCAAtcataatgcattaaaaaaatttgcATTGC
>TCONS_00060117
AGTTTTCAGAGATCTAAGGGGAAGATAATACAAGGAATTAAGGCGATTTTTTTCGGAAATTTCCCACCCCTAATCAAAACAGAAGGGGTCTCAACACAGATCCTAATCCAGACAACCACACAAAAATGGTCGTAGTTACAGCAGGGACCGGAGGAGCCCACAAAGTCCTCCTGATATCGGGAAAACAGAGCGCTTCGACCGGCGCGACACAGGGCGGGTACAGCCGCTCAATATCTGTCATGATACCGAATCAAGCCTCTTCAGATTCAGACTCCACCACCTCTGGACCACCACTGAGAAAACGACAGAGACTCACACATCTGAGCCCAGAGGAAAAAGCACTTCGAAGgaaatTAAAGAACAGAGTTGCTGCACAGACAGCAAGAGACAGAAAAAAGGCAAAAATGGGGGAGTTGGAACAGCAAGTGCTGGAGTTGGAGCTGGAGGTACTTTGAccattgttttgctttttttctatTTGATGTACAAGGATCTTTGTAGTTCAGAAGACAAATGTAAttataaatgatgaaataaaataataataatgtttagataatttatgaaaatataattttgctgttttCCACAGAATCAGAAACTTCACGTTGAGAACAGGCTGTTGCGAGACAAGACGAGTGATCTGCTCAGTGAGAATGAGGAGCTGAGACAGAGACTGGGGTTGGATACCTTGGAAACAAAGGAGCAGGTTCAGGTACTGGAGTCCGCAGTGAGCGATTTAGGTTTGGTGACCGGGTCTTCTGAGTCCGCAGCACTCAGGCTACGTGTGCCTCCGCAGCAGGTGCAGGCCCA

Function

symbol description
xbp1 Enables DNA-binding transcription factor activity, RNA polymerase II-specific. Acts upstream of or within gland development; hatching; and transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in several structures, including axial mesoderm; axis; digestive system; ectoderm; and germ ring. Orthologous to human XBP1 (X-box binding protein 1).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0048785 hatching gland development biological_process
GO:0006990 positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response biological_process
GO:0001889 liver development biological_process
GO:0035188 hatching biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG:

id description
ko04141 Protein processing in endoplasmic reticulum
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05014 Amyotrophic lateral sclerosis
ko05017 Spinocerebellar ataxia
ko05022 Pathways of neurodegeneration - multiple diseases
ko05417 Lipid and atherosclerosis
ko04932 Non-alcoholic fatty liver disease
ko03000 Transcription factors

ZFIN:

id description
ZDB-GENE-011210-2 Enables DNA-binding transcription factor activity, RNA polymerase II-specific. Acts upstream of or within gland development; hatching; and transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in several structures, including axial mesoderm; axis; digestive system; ectoderm; and germ ring. Orthologous to human XBP1 (X-box binding protein 1).

Ensembl:

ensembl_id ENSDARG00000035622

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00060114 False 2135 nonsense_mediated_decay 0.46 5 15944411 15948833
TCONS_00060115 False 1728 mRNA 0.49 5 15944411 15948920
TCONS_00060116 False 2135 mRNA 0.46 5 15944412 15948833
TCONS_00060117 True 813 lncRNA 0.45 3 15946218 15948868

Neighbor

gene id symbol gene type direction distance location
XLOC_030922 si:dkey-1k23.3 coding downstream 92458 15841523 ~ 15851953 (-)
XLOC_030921 NA coding downstream 126854 15813775 ~ 15817557 (-)
XLOC_030920 BX649391.1 coding downstream 209831 15734525 ~ 15734580 (-)
XLOC_030919 CR384085.1 coding downstream 252381 15690639 ~ 15692030 (-)
XLOC_030918 CU694999.1 coding downstream 419629 15523008 ~ 15524782 (-)
XLOC_030924 coq5 coding upstream 179294 16128214 ~ 16139600 (-)
XLOC_030925 kremen1 coding upstream 203024 16151944 ~ 16274058 (-)
XLOC_030926 NA coding upstream 330320 16279240 ~ 16351306 (-)
XLOC_030927 NA coding upstream 404077 16352997 ~ 16356940 (-)
XLOC_030928 slc39a14 coding upstream 411289 16360209 ~ 16425781 (-)
XLOC_030915 NA non-coding downstream 634303 15307539 ~ 15310108 (-)
XLOC_030913 CR936518.1 non-coding downstream 728627 15186823 ~ 15215784 (-)
XLOC_030912 NA non-coding downstream 944415 14999622 ~ 14999996 (-)
XLOC_030930 CR450719.1 non-coding upstream 496429 16445349 ~ 16445465 (-)
XLOC_030933 CR392021.1 non-coding upstream 950003 16898923 ~ 16899047 (-)
XLOC_030934 CR759970.1 non-coding upstream 1091701 17040621 ~ 17041288 (-)

Expression


Co-expression Network