XLOC_030927


Basic Information

Item Value
gene id XLOC_030927
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 16352997 ~ 16356940 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00061966
AAGAGTTATTTATAGGACCATTAGATATATAAAGCTGAACCATGTTATTTCCGTGGCAAATGCTTTCAAatataataacacatttattatggCTTTCAAATATGTAGTCTGAATTCCTCCACTGGTTACATCAACTATTTGTTATTTGAGTTATTCTAACTCAACATAATCTGTATGCTTTCACAAAGAGTCAAGTATCTTTAAGCACTCAAATACTTACCGATGTCAGAAGCTGCAGTACtcctaaaggtgcagtaggtgatctgcctaaatgcaaTCTGTTAGCATAATATATTTAACCCAGTGTCTCCCCTGCTGTCTAAAGCCACGCCTCTTGAAATCACAAACGAAGACAAATTTATAGTagtttataatactacaattttgaaggaaaaactgtattatatcaagcacgttttcagttgtgtagcaagcaaaacttaaTGTGCAAtattgtgcaatatttcatgcatgcaaggatcgctgttCTCACTCACACgatttgtgtgtttttcagaTAAGACTAATTTTAATGATCCAGGTGCAAATACCAAAGTGCAGGGCGTAAAAGCGCTAAGTCTAAATCCActtttgcgatttttttttttttttttttttttttttttttttttttttttttttttttttttttttcccgctgcagcacatggtctaacagggttgagcttattctcttaatgggtTATACTGTAGGtgggttttgagaataaaccattaTATGGTATATATTTcgctggaagatttcagtggctgataAACTCTAAAATAGTTCTTAAACCAAaaattacctgtctaaaagaaatacttcatccttcctccagcatgcaaaagtaactccaatattgattcaggattttcaaaggttttgattcagcatttgctTTTACTGCTGTCACTCTCTCTGAGTAAGCAAatttacaaatctacatttgttgacaggcAGTTTGGGcgacttatcagaattatgggaattattaGCCtaaaaatttgtaattaaattaacgtttttttttatttcttacattttatttcttatgtatagaatataaaaacacttataaatgcatttagatcatttactttaatcattactattggaatgtgaagagactttcaaccagcacaacaaaaaatgtttctgaaaacaatcacCGACTGCACCTTTAACCTGACGTTAGCACAAAAATAACAAACCAAATCAACAAAAACCAATGCAAAGTGTTGCTAAGTTGCTATACCCATACCTAACAGGCAGATATCAGCCTTGTGTTAAAAATATCGAAAGTTTATAACCAAATCCATTATCAAGCTAGAAAACTATACTCCCAGATTTTATTGGGCTAAATAGAATCGCATTCCTGATAGtataaatatcaaaaataaacatAGCCACTTTCGATACTTCTTATTAATTATTCTCAAAACAATCCAAGAAAGTACAAGAGACTGCAAAACAAAGCAAACGCCAATCAAGGTTTTACTTGAGGAAGAGCTCCCATTTGTTACATGCCAGCTCAAACACGCAACAAATGAAGAAAACCAAAACAAATCGAaggaaaatacaaaattaatttatttaaaggttagaaaaatactaaaaaataaagttttaagggCTACCAATGTAACCCATTTGTAAATTAAATGTCTAGCATAACATGTAAagctcaaaacaacaacaacaacagataaGATGAGATCAAATTCAACAAACATGTAAGATGGAAAAGGAGTGCTTCTTTAATATTACGCCAGCTATAAAAATGGCTTCAATTAGagtttgttaaaaatgtccttataCAAAAAGtctataaaatgttacatttctaTGCAGCAAAAAACTATTTCAGCAATTCAGAGCTAATTCAGAAGCTAACCTCGCGCTTTTGACCATCACAGATCTCACCGTAGATTCCCTGCTATAGCTTTTGTCTTCCACATAACTATGTTTTCTTCCACTATGCTTAATGTTCATACTATTAATATTCTGATCTGCTCTAGCATTGACACCTGTTCTCATCAGCAATGGAAACAAGATCATTCTGTTTGCCATTTGAAAGGTAATTCTATCTCCATATGAACTAAACATTAACTGTATGCTCAACAAACTTTATTCCAGGGCCATAGTTAAAGCATTTTCTGTGCATTTCAACTCTCAGCATTAATTTTCTGTATGTTCCTCTGTTGAGTGCTTATGTTCAGCTTTTTGTGCAACACCACTTTATTGCAGTTATTATTTTAGCCAGCGTTTTACAGCTATGCATCAACATCCTCTGAAGTGAGTTTATGCCTTAAAGTGGAGGTCTCAATGCCATCGTTCAGtggtaaaaacatttttgtacctcattttaaagatatttaaagactattttgtAGTGTAGAGTGTGTGGGaatgtttgtgaattttttttaagtcattgtTTGTGTATTTAGTCAAAAgcaattgtatttaaatgataagAGGGaagctgttttaaattgtgtGTTGTAAGAGAGTGTGTGAACAAATCGACATctcaatatttagttttagtttttttgtttttcattggaAGGTGAAAAccaaccctgcaggcacaggacgtcaacctgacgtcatattgatgttgtaccccaacgtcatggggacgtttgatttagtttggaaatgaaaatcaggttgacgtcagaacccaatgtcaagCTGACGTCAGAGTCCAATgtttaacctaaaatcaaccaaatatcaatgtctaatcatgctACACCTtcacgttgtgtggacgttacctcTATGACATCtctcagacgttggattttggtcactttccaacacaacataaaatcaaccaaatatcaacgtaatttgacatcattattggacatcagaATAGCGTTGTtattagatgctggctagacattgaattttggtcacctgacgtcatgacctaaatctagcctaatattaacgtccatgatgtgtgcctgctgggaagtgTGTACCTGGTTATGATGAATGCATTATGTTAATTACTGTAAACATCTCAAGTGTTGTGTGACTCCTGTGCATCATGTGAAATCTGACTGCTGGTATGTtagtttttcttcttttgaaaTATTAAGCCATGAGTTCAACTTTTGTGCAATGAAATACATCTATTTCAAAACTGTAAGCTGTTGCTTTTCGTTCATTTATATTGTCTTggtttattgatttttaaatgaaaGCAGTCAAAACCGCTTGTTTAAATGATCTGTTTTATAGCATTagatgtaaaaatattattaatctgTAGCCTTAAATTGACTATGCTTTATGATGTACTGCGGGCTGGAAAATAATAACTACTCGAGTGTGTTAAACTCTCACATATTAAGctggctttttttatttatttaattccagGACATTGCTAAACATCTAAAGCCATTAACTGACTCTAGGCTACTACAACCATATGGGGACTTTGTTTAAAGGCTAGTCGCTCTCTTCACATGCAATTGCGTGTTAGTTTATTACCTGATGGTAGATTCCATCAAAGTCTCAATAAATATCGGTGGATAAAACTCAATATAGAGTTCATTTTTTATGCTAACTTGTTGGCTTATTTGGAAATTCCCCCAACCTGTCGTCAACTGAAAGGTTTCCGACCATGGAGCCTTTATTACAGGAGttcattcaattcaataattgctttatcgGCATGAcaaattttacaaatgttttgccaaagcattttaaaaagtttacatttaaaaagaacatgtgtgaatatgtttttaattaatataataattaaatgttaatgtaatcaaTAGAGTCACTCGTCTCATTGATTCATTATGATCAGTCATTTATACAGGTGCATCGGCTAATAAATGTGTTAATTAGATATAGAAAAGTTATATTGGATGTATTAAATGCCTTGTGTACAAAACTGccg

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0043009 chordate embryonic development biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0048513 animal organ development biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0001501 skeletal system development biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0006412 translation biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0048568 embryonic organ development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0042255 ribosome assembly biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0006518 peptide metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0007420 brain development biological_process
GO:0048704 embryonic skeletal system morphogenesis biological_process
GO:0048705 skeletal system morphogenesis biological_process
GO:0048706 embryonic skeletal system development biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0044391 ribosomal subunit cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0005829 cytosol cellular_component
GO:0005840 ribosome cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00061966 True 3944 lncRNA 0.33 1 16352997 16356940

Neighbor

gene id symbol gene type direction distance location
XLOC_030926 NA coding downstream 1691 16279240 ~ 16351306 (-)
XLOC_030925 kremen1 coding downstream 78939 16151944 ~ 16274058 (-)
XLOC_030924 coq5 coding downstream 213397 16128214 ~ 16139600 (-)
XLOC_030923 xbp1 coding downstream 404077 15944411 ~ 15948920 (-)
XLOC_030922 si:dkey-1k23.3 coding downstream 501044 15841523 ~ 15851953 (-)
XLOC_030928 slc39a14 coding upstream 3269 16360209 ~ 16425781 (-)
XLOC_030929 piwil2 coding upstream 71471 16428411 ~ 16475682 (-)
XLOC_030930 CR450719.1 coding upstream 88409 16445349 ~ 16445465 (-)
XLOC_030931 atad1a coding upstream 320324 16677264 ~ 16791223 (-)
XLOC_030932 galnt9 coding upstream 440269 16797209 ~ 16996482 (-)
XLOC_030921 NA non-coding downstream 535440 15813775 ~ 15817557 (-)
XLOC_030920 BX649391.1 non-coding downstream 618417 15734525 ~ 15734580 (-)
XLOC_030915 NA non-coding downstream 1042889 15307539 ~ 15310108 (-)
XLOC_030913 CR936518.1 non-coding downstream 1137213 15186823 ~ 15215784 (-)
XLOC_030933 CR392021.1 non-coding upstream 541983 16898923 ~ 16899047 (-)
XLOC_030934 CR759970.1 non-coding upstream 683681 17040621 ~ 17041288 (-)
XLOC_030939 NA non-coding upstream 1931870 18288810 ~ 18289576 (-)
XLOC_030940 NA non-coding upstream 1960963 18317903 ~ 18424637 (-)

Expression


Co-expression Network