XLOC_030931 (atad1a)


Basic Information

Item Value
gene id XLOC_030931
gene name atad1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 16677264 ~ 16791223 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00060132
GCCAACCGCTGTAAAAATTATAAGAAACACGGATGTAGGAACCTGTGTTTCCATAGATTTGTTTCCGGACGGTACATATCGGACAGTTACACTAGTCTTGTTTGTGGATTTAAGGAATGCTGTGAAATGTGAGtggatattttttaaatgtactgcGTTATGATGTTCATATCTTGGGTTTTAGCTTAACACTCGGTTTGGGTTTTTGTCATTAGTGTATTAGAAGTGCGGGGGAAAACATACCTTTCGTTTTTGTCTCTTAGGAGGATGTTCTTTCTTACAATGCTTTGCTGTATGTTTTTACATATTGCTATTTTTGGTCGTCGGTAGAATTTAATTAATAGATTTTGACATCAATAGTAATACTCTATAAGAAATTTAGTGCTTTGCTCCGTTTTAAATGTCTTTCACGCCCATGTCACGCTGCATCTGaattaagaccattatgaatgctCAATTAATCCGTGTGTAACGTTGTCTTTAAGCGTATAACAGTAAAATAAAGGTCAAGAAATGTTTGTTCTGGATCTACtgtgatttatatttattgtacCTGCTCTCTCCTAGATTGACACAACCAGTCTGTTGTTCTTATCCAATGGGCTGACAGCGGGGGCGGGCCATAATGCTGAGTGACATTCCTCGGGATGCCCTGCTCCGCCCACTCACCCGGAATGAAGTTGTGGGGATGTTGGTGAGGCTGACCGTGTTTGGTGCTGCAACATATTACAGCATCAAATGGGTGGTGGATGCTTTGGACCcgacacaaaaacaaaaatcccAAGCCAAGAAAAGGGCAGAGCAATTGATGAAGCAGATAGGTGTAGAGGGTGTCAGTCTTACGGAGTATGAGATGAACATCGCCACTCTTCTGGTTGATCCTCGCAGCATCAAAGTGACCTGGAGAGATGTTGCTGGGCTAGATGAGATCATCTCAGAGATGCAAGACACTGTCATCTTGCCTTTCCAGAAACGTCATCTCTTCAGTGGTTCTAAGCTCTTGCAACCTCCCAAAGGTGTACTATTGTATGGACCCCCAGGATGTGGAAAGACATTAATTGCCAAAGCAACAGCAAAAGCATCTGGATGCCGCTTTATTAATCTACAGGCCTCCACTTTGACTGACAAGTGGTACGGCGAATCGCAGAAGTTGACCGCTGCTGTTTTCTCATTGGCTGTCAAGATTCAGCCATGCATCATTTTCCTTGATGAAATAGATTCATTCCTGAGAAATCGTTCCAGTATGGACCATGAAGCCACTGCTATGATGAAGGCCCAGTTCATGAGTCTGTGGGATGGACTTGACACAGGAGAAAACAGCCAGGTAATGGTGATGGGAGCCACTAACAGACCACAGGATGTGGATGCCGCAATACTGCGCAGAATGCCTACTGCCTTTCATGTAGGCCTGCCTAATGCAGCTCAAAGAGAAGAAATCCTTAGACTCATCCTGTCTGGTGAAAATcTAAGTAATGCAATTAACCTGAAGGAAATCGCGAGTCAAAGCGAGGGCTACTCCGGCAGTGATCTGAAAGAGCTGTGCAGGGACGCCGCCATGTACCGTGTCAGAGACTACGTCCGCAAACAGCAGATGAAACAGATCGCACAACAGTTCCAACTGGACGAAGAGGAAGAGCATGTGGACAGCAGGCAGCTCAGGCCCGTGACTCAACTGGACCTGCTGTTTGGCCTAGATAAGATGAGAGAGTCCAAACAGGCCACAGCTACAACTGACCCAGCAAATCTGAGAGAGATCTGTGTACGGACCGGTTGACATCTCAACACCCTTCATGCACAAACGCCAGGGCAGTGCGGACCGAGCCGTGCATGTGTCAGTTTGATGGGCATGAGTCACAGTGACAGCTCTATTAGAGATGTTAATAGAACAGGACAAAAGCCCAGCACCCACTCAGGAAGCAGGAGATGGGGTAATGATGGCTAATTAACTCACGGGAGCTTCTCCTCTTTCTCCTTCACTAGGGAAGAAAATATGACTCACAACACAGTTGACCACCTGCACACACTGATCCCAAATAAAGCTCAACAATTCCTCCTTGCACATTTAAAAGTCAGAGTAATCTGAGTTCTGAGAATGACTCACCAGCGGTACACATTCACACCACAGCACAGCGAGTGTTGACTTAAAAAGTCTGTGCTACCTGAAATTGTACACGTGGgtgtattattttaattcttgAATTTGACGTGTGGAGGCTGTTCTTTCATTTGATGTCTGACGGTTCAAGCAAGAGGCGCATACTAAAAGGATATTGACTGTTAAATGAGGAACATATTGATTATTGGGCTGCCTTAATGTACAGATTTGATCTTTTCACCCTATCAGTTTTTTTGTCCCATCTGcaataatgcattttaaacacAACTGATATATCATAACTGTTTATATTAatcccttttaaaaaaatattctgttgGTGATCACTTTGCCATCATTATTGTTGATCATGAGGTTTT
>TCONS_00060131
GCCAACCGCTGTAAAAATTATAAGAAACACGGATGTAGGAACCTGTGTTTCCATAGATTTGTTTCCGGACGGTACATATCGGACAGTTACACTAGTCTTGTTTGTGGATTTAAGGAATGCTGTGAAATATTGACACAACCAGTCTGTTGTTCTTATCCAATGGGCTGACAGCGGGGGCGGGCCATAATGCTGAGTGACATTCCTCGGGATGCCCTGCTCCGCCCACTCACCCGGAATGAAGTTGTGGGGATGTTGGTGAGGCTGACCGTGTTTGGTGCTGCAACATATTACAGCATCAAATGGGTGGTGGATGCTTTGGACCcgacacaaaaacaaaaatcccAAGCCAAGAAAAGGGCAGAGCAATTGATGAAGCAGATAGGTGTAGAGGGTGTCAGTCTTACGGAGTATGAGATGAACATCGCCACTCTTCTGGTTGATCCTCGCAGCATCAAAGTGACCTGGAGAGATGTTGCTGGGCTAGATGAGATCATCTCAGAGATGCAAGACACTGTCATCTTGCCTTTCCAGAAACGTCATCTCTTCAGTGGTTCTAAGCTCTTGCAACCTCCCAAAGGTGTACTATTGTATGGACCCCCAGGATGTGGAAAGACATTAATTGCCAAAGCAACAGCAAAAGCATCTGGATGCCGCTTTATTAATCTACAGGCCTCCACTTTGACTGACAAGTGGTACGGCGAATCGCAGAAGTTGACCGCTGCTGTTTTCTCATTGGCTGTCAAGATTCAGCCATGCATCATTTTCCTTGATGAAATAGATTCATTCCTGAGAAATCGTTCCAGTATGGACCATGAAGCCACTGCTATGATGAAGGCCCAGTTCATGAGTCTGTGGGATGGACTTGACACAGGAGAAAACAGCCAGGTAATGGTGATGGGAGCCACTAACAGACCACAGGATGTGGATGCCGCAATACTGCGCAGAATGCCTACTGCCTTTCATGTAGGCCTGCCTAATGCAGCTCAAAGAGAAGAAATCCTTAGACTCATCCTGTCTGGTGAAAATcTAAGTAATGCAATTAACCTGAAGGAAATCGCGAGTCAAAGCGAGGGCTACTCCGGCAGTGATCTGAAAGAGCTGTGCAGGGACGCCGCCATGTACCGTGTCAGAGACTACGTCCGCAAACAGCAGATGAAACAGATCGCACAACAGTTCCAACTGGACGAAGAGGAAGAGCATGTGGACAGCAGGCAGCTCAGGCCCGTGACTCAACTGGACCTGCTGTTTGGCCTAGATAAGATGAGAGAGTCCAAACAGGCCACAGCTACAACTGACCCAGCAAATCTGAGAGAGATCTGTGTACGGACCGGTTGACATCTCAACACCCTTCATGCACAAACGCCAGGGCAGTGCGGACCGAGCCGTGCATGTGTCAGTTTGATGGGCATGAGTCACAGTGACAGCTCTATTAGAGATGTTAATAGAACAGGACAAAAGCCCAGCACCCACTCAGGAAGCAGGAGATGGGGTAATGATGGCTAATTAACTCACGGGAGCTTCTCCTCTTTCTCCTTCACTAGGGAAGAAAATATGACTCACAACACAGTTGACCACCTGCACACACTGATCCCAAATAAAGCTCAACAATTCCTCCTTGCACATTTAAAAGTCAGAGTAATCTGAGTTCTGAGAATGACTCACCAGCGGTACACATTCACACCACAGCACAGCGAGTGTTGACTTAAAAAGTCTGTGCTACCTGAAATTGTACACGTGGgtgtattattttaattcttgAATTTGACGTGTGGAGGCTGTTCTTTCATTTGATGTCTGACGGTTCAAGCAAGAGGCGCATACTAAAAGGATATTGACTGTTAAATGAGGAACATATTGATTATTGGGCTGCCTTAATGTACAGATTTGATCTTTTCACCCTATCAGTTTTTTTGTCCCATCTGcaataatgcattttaaacacAACTGATATATCATAACTGTTTATATTAatcccttttaaaaaaatattctgttgGTGATCACTTTGCCATCATTATTGTTGATCATGAGGTTTT
>TCONS_00060133
CCATAGATTTGTTTCCGGACGGTACATATCGGACAGTTACACTAGTCTTGTTTGTGGATTTAAGGAATGCTGTGAAATATTGACACAACCAGTCTGTTGTTCTTATCCAATGGGCTGACAGCGGGGGCGGGCCATAATGCTGAGTGACATTCCTCGGGATGCCCTGCTCCGCCCACTCACCCGGAATGAAGTTGTGGGGATGTTGGTGAGGCTGACCGTGTTTGGTGCTGCAACATATTACAGCATCAAATGGGTGGTGGATGCTTTGGACCcgacacaaaaacaaaaatcccAAGCCAAGAAAAGGGCAGAGCAATTGATGAAGCAGATAGGTGTAGAGGGTGTCAGTCTTACGGAGTATGAGATGAACATCGCCACTCTTCTGGTTGATCCTCGCAGCATCAAAGTGACCTGGAGAGATGTTGCTGGGCTAGATGAGATCATCTCAGAGATGCAAGACACTGTCATCTTGCCTTTCCAGAAACGTCATCTCTTCAGTGGTTCTAAGCTCTTGCAACCTCCCAAAGGTGTACTATTGTATGGACCCCCAGGATGTGGAAAGACATTAATTGCCAAAGCAACAGCAAAAGCATCTGGATGCCGCTTTATTAATCTACAGGCCTCCACTTTGACTGACAAGTGGTACGGCGAATCGCAGAAGTTGACCGCTGCTGTTTTCTCATTGGCTGTCAAGATTCAGCCATGCATCATTTTCCTTGATGAAATAGATTCATTCCTGAGAAATCGTTCCAGTATGGACCATGAAGCCACTGCTATGATGAAGGCCCAGTTCATGAGTCTGTGGGATGGACTTGACACAGGAGAAAACAGCCAGGTAATGGTGATGGGAGCCACTAACAGACCACAGGATGTGGATGCCGCAATACTGCGCAGAATGCCTACTGCCTTTCATGTAGGCCTGCCTAATGCAGCTCAAAGAGAAGAAATCCTTAGACTCATCCTGTCTGGTGAAAATcTAAGTAATGCAATTAACCTGAAGGAAATCGCGAGTCAAAGCGAGGGCTACTCCGGCAGTGATCTGAAAGAGCTGTGCAGGGACGCCGCCATGTACCGTGTCAGAGACTACGTCCGCAAACAGCAGATGAAACAGATCGCACAACAGTTCCAACTGGACGAAGAGGAAGAGCATGTGGACAGCAGGCAGCTCAGGCCCGTGACTCAACTGGACCTGCTGTTTGGCCTAGATAAGATGAGAGAGTCCAAACAGGCCACAGCTACAACTGACCCAGCAAATCTGAGAGAGGTGCCTCTGGACTGAAAAAACTCTCGCTTTACACATTCACAAATTCTCTCTCACACCTCTTTTTTCCCACCTCATCTTTTTTTActcctttttaaattattttttctgccttttttacatttctgttacATCTCAAACATTCATTTTTCCACTGTAATGAATGAAATAAGATATTCAAGAAAGTGACTGTGCATATTTATAGTAAAACAATACTAAATTGGGA
>TCONS_00060134
TCGTACTTCTGTCAGACGAGATATGTATTAGAGAAGAAGAAGGAGGAAAAAAAGAGATGTGTTGTGTAGTCTGGCCTTGCAGGATAAAAGCAGAAgttgtaaaatgttaatgttttcacTCCCAGAGCTGTTAAACACCCAGAGGACACTAAAGCAGAGAGACAGCTTTCAATTTAGCGGAAGAGGACAGTTCCAGGTCCAGGTTTCTGACAAGGGCAGCTCCACTCACAACACAGAGTCTGCAAACTGATGTATGGCTCACATTATACCCCCGCTCTTCCTCTGACACACAGGATGGATGACGGGATGCAGTAATGGGGAGCTTTGAGGAGGACAGCAGGACAGGAATGAGAAGCAGGTCACCAGGAAACCTTCCCAGGAAGACTTTCACTGACTGAGATTGACACAACCAGTCTGTTGTTCTTATCCAATGGGCTGACAGCGGGGGCGGGCCATAATGCTGAGTGACATTCCTCGGGATGCCCTGCTCCGCCCACTCACCCGGAATGAAGTTGTGGGGATGTTGGTGAGGCTGACCGTGTTTGGTGCTGCAACATATTACAGCATCAAATGGGTGGTGGATGCTTTGGACCcgacacaaaaacaaaaatcccAAGCCAAGAAAAGGGCAGAGCAATTGATGAAGCAGATAGGTGTAGAGGGTGTCAGTCTTACGGAGTATGAGATGAACATCGCCACTCTTCTGGTTGATCCTCGCAGCATCAAAGTGACCTGGAGAGATGTTGCTGGGCTAGATGAGATCATCTCAGAGATGCAAGACACTGTCATCTTGCCTTTCCAGAAACGTCATCTCTTCAGTGGTTCTAAGCTCTTGCAACCTCCCAAAGGTGTACTATTGTATGGACCCCCAGGATGTGGAAAGACATTAATTGCCAAAGCAACAGCAAAAGCATCTGGATGCCGCTTTATTAATCTACAGGCCTCCACTTTGACTGACAAGTGGTACGGCGAATCGCAGAAGTTGACCGCTGCTGTTTTCTCATTGGCTGTCAAGATTCAGCCATGCATCATTTTCCTTGATGAAATAGATTCATTCCTGAGAAATCGTTCCAGTATGGACCATGAAGCCACTGCTATGATGAAGGCCCAGTTCATGAGTCTGTGGGATGGACTTGACACAGGAGAAAACAGCCAGGTAATGGTGATGGGAGCCACTAACAGACCACAGGATGTGGATGCCGCAATACTGCGCAGAATGCCTACTGCCTTTCATGTAGGCCTGCCTGTGAGTCTGCAGAATTTACACACGTTTTGCACACTGTTTTTGTTAATTGCATGTCTTTATGAAGGTAAGATGTTGTCTTTGGTCCATTTTCAGAATGCAGCTCAAAGAGAAGAAATCCTTAGACTCATCCTGTCTGGTGAAAATcTAAGTAATGCAATTAACCTGAAGGAAATCGCGAGTCAAAGCGAGGGCTACTCCGGCAGTGATCTGAAAGAGCTGTGCAGGGACGCCGCCATGTACCGTGTCAGAGACTACGTCCGCAAACAGCAGATGAAACAGATCGCACAACAGTTCCAACTGGACGAAGAGGAAGAGCATGTGGACAGCAGGCAGCTCAGGCCCGTGACTCAACTGGACCTGCTGTTTGGCCTAGATAAGATGAGAGAGTCCAAACAGGCCACAGCTACAACTGACCCAGCAAATCTGAGAGAGGTGCCTCTGGACTGA
>TCONS_00060135
ATTGACACAACCAGTCTGTTGTTCTTATCCAATGGGCTGACAGCGGGGGCGGGCCATAATGCTGAGTGACATTCCTCGGGATGCCCTGCTCCGCCCACTCACCCGGAATGAAGTTGTGGGGATGTTGGTGAGGCTGACCGTGTTTGGTGCTGCAACATATTACAGCATCAAATGGGTGGTGGATGCTTTGGACCcgacacaaaaacaaaaatcccAAGCCAAGAAAAGGGCAGAGCAATTGATGAAGCAGATAGGTGTAGAGGGTGTCAGTCTTACGGAGTATGAGATGAACATCGCCACTCTTCTGGTTGATCCTCGCAGCATCAAAGTAAACACAAATACTGTCCGCACTGCATTTAATGCAACCCTTTCATGAAATCACACTCTGCTTCATTACATCGGAGTTCATTACAAAAAATAGACACAGTATTATTTTTCAACCTGATTTAAAGTACATGTGAATTGCACTGACAGATTGCACACCTATGACAGCACAAACCTGCAATTTGTTTTTCTCACAATGGCCCTCCGGTCTTTTCCAAGTCATCAGTGGCCTATATGGTCGAAAATATTCTTCCTTTCCTTGCTAGGTGACCTGGAGAGATGTTGCTGGGCTAGATGAGATCATCTCAGAGATGCAAGACACTGTCATCTTGCCTTTCCAGAAACGTCATCTCTTCAGTGGTTCTAAGCTCTTGCAACCTCCCAAAGGTAAAGAAAATAGAGAATGCATTTTAAAGGACAAAACTTACATTTCGCTTGGCATTTAGAGTTTGTTTTTGATCTTATTTTTTGTAGATATTGTACCAGGCAGTACCAATAGTTATAGAAACTAACAAACACTGGAAGCTGCT

Function

symbol description
atad1a Predicted to enable ATP binding activity. Predicted to be located in mitochondrial outer membrane; peroxisomal membrane; and postsynaptic membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in hyperekplexia 4. Orthologous to human ATAD1 (ATPase family AAA domain containing 1).

GO:

id name namespace
GO:0005777 peroxisome cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0045211 postsynaptic membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016020 membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016887 ATPase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030616-593 Predicted to enable ATP binding activity. Predicted to be located in mitochondrial outer membrane; peroxisomal membrane; and postsynaptic membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in hyperekplexia 4. Orthologous to human ATAD1 (ATPase family AAA domain containing 1).

Ensembl:

ensembl_id ENSDARG00000023267

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00060132 False 2475 mRNA 0.44 10 16677264 16734110
TCONS_00060131 False 2036 mRNA 0.46 11 16677264 16734110
TCONS_00060133 False 1487 mRNA 0.46 10 16718919 16734060
TCONS_00060134 False 1693 mRNA 0.48 9 16719127 16791223
TCONS_00060135 True 854 lncRNA 0.43 2 16730409 16733543

Neighbor

gene id symbol gene type direction distance location
XLOC_030929 piwil2 coding downstream 201582 16428411 ~ 16475682 (-)
XLOC_030930 CR450719.1 coding downstream 231799 16445349 ~ 16445465 (-)
XLOC_030928 slc39a14 coding downstream 251483 16360209 ~ 16425781 (-)
XLOC_030927 NA coding downstream 320324 16352997 ~ 16356940 (-)
XLOC_030926 NA coding downstream 325958 16279240 ~ 16351306 (-)
XLOC_030932 galnt9 coding upstream 5986 16797209 ~ 16996482 (-)
XLOC_030933 CR392021.1 coding upstream 107700 16898923 ~ 16899047 (-)
XLOC_030934 CR759970.1 coding upstream 249398 17040621 ~ 17041288 (-)
XLOC_030935 si:ch211-130h14.6 coding upstream 808647 17599870 ~ 17602206 (-)
XLOC_030936 si:dkey-112e17.1 coding upstream 1057442 17848665 ~ 17876709 (-)
XLOC_030921 NA non-coding downstream 859707 15813775 ~ 15817557 (-)
XLOC_030920 BX649391.1 non-coding downstream 942684 15734525 ~ 15734580 (-)
XLOC_030939 NA non-coding upstream 1497587 18288810 ~ 18289576 (-)
XLOC_030940 NA non-coding upstream 1526680 18317903 ~ 18424637 (-)
XLOC_030942 NA non-coding upstream 1992515 18783738 ~ 18784434 (-)

Expression


Co-expression Network