XLOC_030932 (galnt9)


Basic Information

Item Value
gene id XLOC_030932
gene name galnt9
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 16797209 ~ 16996482 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00060136
CATCCCCTCAAACAGTCTGATGAATATGCATGAGTTTGCCGACGTCACCAGAGCGCTGAGCAGCGCGTGAAAAGCGGGATGTGAGGGAGGGATCATGCGGGAGCGCGAGAGAAGAACACTGCCATGCAAAGCGTCGCTTGACAGCATCTTTTATACTTGGCTTCGTTGCATAAGGATTGTGCATCTGCGCCGGCTATTGAAATCGCCTTATATTTCGATGCGCGATGCGTCTTCGCTTTACCAGATAGACGGAGTAGCGTGAAAGGATGCTGCACACGGAGGATCGTTGCTggttgacatgcactgacatttaaAATGAGCCATGCATCATGAGTGCACAGCGTGATTAAACGCGTGCTTTTAATCCGTAGGCTGCTCTGACACATTTCTGGACGTTTGTAATGGGGGTCAACGCTGGAGCCGGAGGCGGTGGGATTTGATCGCAGCCTCTACTGCGTGTTTTTACTTGCATTTATACACTtgcatcatcatcaccatcatcatcataggCGCTCGTTGATCAGCTGTTCGGCTTGAGAAACTGCGGCGCACGCGGCTCGTGTGTGGTGCTGAAAGAACAGCTCCCACCACAGCGGATCGTATGGATCAATATTAGGGGGGTCTGACAGTGTCGCTCTCGGGCTTTAATGGCTGTGGCACGCAAGATCAAAACTCTGCTGACGGTCAACATTCTGGTGTTCGTCGGGATCATCCTGTTCTCGGTCTACTGCAGGATCCAGGACCGGTCGGAGGAGCTCGTGCAGATCGGGAGACTGTCGGACCAAAGGCTGCGAGGCAGGAATGCCAAAGTTACGAACTCCATGGACAGGCAGTCCATTCTTAAGAGACTCGAGCGACTGGAAGATGTGGTCTATAATCAGTTAAATGGTCTAGCCAAGCCCATGGGTCTGGTGGAGGGTCCTGGAGGTCTAGGACAGGGCGGTGCTGCTGCCACGCTGGGAGAGGACAGCCGGGAGACTGAAGGGAGATTCGAGGAGTATGGCTACAACGCTCAGCTGAGTGACCGCATCTCCTTGGACAGGAATATTCCGGACTACAGGCCCAAAAAGTGTAAGCAGCTGACCTACTCCGATGACCTTCCCCAGATCTCTGTGGTCTTCATCTTTGTGAACGAAGCTCTTTCTGTCATCCTTCGCTCAGTTCACAGCATGGTCAACCACACTCCGGCACATCTGCTCAAAGAAATCATCCTGGTGGATGACAACAGCGACAGCGTGGAGCTAAAGTTCAATCTGGATCATTATGTGAATAAACGATATCCTGGCCTGGTGAAGATCGTGAGGAACAGTAAGAGAGAAGGCCTCATTCGTGCCAGGATTCACGGCTGGAACGCAGCCACTGCTCCTGTTGTAGGCTTCTTTGACGCTCACGTGGAGTTCAACACAGCCTGGGCTGAGCCGATCCTCACCAGAGTGAAAGAAGATCACACTAGGATAATCCTCCCTGCGATAGATAATATCAAGTACAATACCTTTGAGGTGCAGCAATACGCTAATGCGGCTCATGGCTACAACTGGGGCCTGTGGTGCATGTACATCATCCCGCCTCAGGATTGGCTGGACAGAGGAGATGAAACTGCTCCAATCAGGACTCCAGCAATGATCGGCTGCTCTTTTGTAGTGGATCGTGAATATTTTGGAGAGATCGGTCTGCTTGATCCGGGCATGGAGGTCTATGGAGGAGAGAACATTGAACTTGGGATGAGGGTTTGGCAGTGTGGTGGCAGTATGGAGGTTCTTCCATGTGCCAGAGTCGCACATATTGAACGCACAAAGAAACCATACAACAATGACATCGATTACTATGCTAAGAGGAATGCGCTGCGTGCGGCAGAAGTCTGGATGGATGAGTTCAAGTCCCATGTCTACATGGCCTGGAATATTCCTATGAACAACCCAGGAGTAGATTTTGGAGATGTGTCAGAGCGTGTGGCACTGAGGAAGAAAATGAACTGCAAGAGCTTCCGCTGGTACCTCGAGCATGTATATCCTGAGATGAGAATCTACAATAACACCATCACTTATGGAGAGgTGCGAAACAGTAAAGCCAGCGGGTACTGTCTTGATCAGGGCTCAGAGGAGGATGAGAGGGCCATACTCTACCCTTGTCACGGCATGTCATCGCAGCTGGCAAGATACACCACTGAGGGCTTATTGCAGTTAGGACCCCTGGGGTCAACTACGTTTCTGCCTGACACAAAATGCCTGGTGGATGATGGAAGAGGAAGGACTCCAAGCTTGAAAAAATGTGATTCTGTCACCCGGTCTTCCCAGAGGCTCTGGGATTTTACTCAGaatgGCCCTATCATAAGTCGAGACACGGGACGCTGTTTGGAGGTTGAAATGTCAAAAGATGCGAACTTTGGCCTGCGGCTGGTGGTCCAGCGCTGCTCAGGGCAGAAATGGATGATTCGGAACTGGATAAAACACCCCagacactgagaaacatccaagCTGAAAACTAAATAACCTGAGCTGGAGAGCAGCCATAGAGTCTGGGGTTCAGGCTCACTCACGCAAGAAACTCTCTTTGAGGGGAAAACACTCTCAATATAGACGTCCAAAGGTGAAATATTGTCTTTGGACGCATTTACTGTCGAGCAACCGGCTAAAGCAGAAGAAAGACTTGCTCCACTTTATAGACTTCCAGCGGATTTGGGAGAAAATTCTGAGAGGAATGATGAAAGAGCTGAGGATAAACAAAGAAAGAAGCAGCTAAAGTTGCAAAGCCCACTGAGCAAAGTCTCGAGATTTATTACTTATCAATTGCCATATCAACACTTATTTCTTCAGGCTGTGAATTGCTTTGGATAATTGAATATCCACATTGAAACTTTAATGGGTATCCTAAGTGCTACGAAAACAGAAAGTAGGATAGACTTCAATCTGACACCACAGTTTCAGCTCTTTTAGCTATTGagtattttctttctttaatttacAGACTTAATTGCTGATGCACAACACAATGTGTTCACTCAAGAACTCATGTGCCTTTCTCCATCTTTATGCCATCAGACCAGGGAATGTTCCTCCCTAAGCATGTacaaaatatttgattttaaattaatgaaaatatgaatataatgttAAGAGGTCCTATTGTAGAAAAAACACGTTGTAAAATACTTCAAACATGATAATCCAGGAagatcaaaacaataaaatacaagtttTCTTCTCTTTTCTACAAAGTtgtgtgatgtgttttatgtgaAGGGGAAAAAACAAGTAATATTGTTTTCTACTGTGTATAAAATTTGATGACATCACATGTGGAGATGGGTAGCTGGGGTTCTAGAACAGTTCTAGATGTAAAAGCttattaaatattaaggaaaCATTATTTTATCATTCTGAAAGTATTAATTGGAATGGGAATGTTTAGTttacgtcagaattattagccccctttttgaatttttctttagggaaaagtcttatttgttttattttggctagaataaaaactgttttttaatttttaaaaaaacaagttaaggttattattattagccccttttttctaataattgttttattattagctatttttttttcgatagtctacagaacaaaccttaacttgcctaattactctaacctgcctagttaatctaattaacctagtttagcctttaaatgtcactttaagctgtatagtagtgtcttaaaaaatatctagtcaaacatttattactgtcatcatggcaaagataaattagtcagttgttagaaatgagttattaaaacaattatgataAGAAATAtgatgaaaaaatcttctctccaataaacagaaattgggcaaaaaaatatacagaggggctaataacaACCAACACTTAACTAAAATGTAGAAATAAAGCTGCTTAAAGGTTAAAggtgcattttgtgtgtgtgtacgtgtgtggctttacattaattaaacattattgaCTAGGCTATTATTTTAAAGGTACTGGATAAGAGTTTGTAAGATAATGTTATCATAACGTTGGCAATGTTCTGAGAATGTCCCCTTTCTAAATCTATGAATAATgtactaataaattattaatttagatttttttattgttttatataggCTCATTCTTtcgtttattaattttctttggcttagtctctatttcagaggttgccacagtgaactgaaccgccaactattccagcatatgttttacgcagcggatgccctttcagccgcaatccagtactgggaaacacccaagcACACtccttctcacacacactcatacactaaggacaatttagtttattcaattcacctgtagcgcatgtctttagactttttggggaaactggagcacctggagaaaacccacgtgaacatagAAAGAACATTGCAAACTTCACAAAAAAAAGCCAACTGCCacaactgggactcgaaccagcaactttctttctgtgaggtgacagtgctaaccactgagccactgtgccacctttaAATTTCGCTTACTCTATTTCAGTACACAACAATTGTGATTTCGAGAAATGTCATCTGAAAGATTGCATTTATAAGATAAAAGCACATGAACATCAACATGAAGCCGATTGTGACTGGGAAACAATAGATTTCCTTTAACACCTGAGTTTCTGAGTTCGCTGTTTGTCTGTAAAATAACACGTCTGACACAATGGTGTAAACCATCTGTACTGAcagtatatttataatttttgtcaTAGGCCTATACAGCAAATAGCATCTAGAAAATACTTTTTGTGGTCTTATGATACAACATATGACAATTCAGTtatcagcacatttataaactgaataaaaacagaTACAAGCTACAACACAATGCAGTTTACTGATCATTTTGTAGATGAGAGTTTTAAAAAATCATGTTGAGTTTTATATATGTTCCTACCAAAGTGATTTGAACACACCTGACATCATAATTACAACTTGGCATCTCGTAAATAAGAAGAACCTGCCAGGAAGACCTGAACACAGCGTTACTtcaacctaatcaaacacacctgaaccaaatCAAGCCTTCAGCAACGCTACAAAGCTAAAGACTGGTAAGTGTGATCTGCTCAAAGCAATACCTcgacatttttaataattaagtgAAGGCTTTATTCCACAGAGACAACTttacaatttaattataataCCAAATGTACCAAATGTAAACAGTACATGTTTGTTGATAGAACGTAGCTGCTGTTAGCATTGAGCCACTAAGCTACACAAAAATACTTAATTGCTTTAACACAATCACCAAACAAATTAAAGCACATAATTACCTGTCCAAAAGATGAAGTGCAATCATGGTGTCATTTTTCAGATGCTTTGAGTTAACTGACaggaaaaagcaatggcaatgttaaaaggatagttcacccaacgaTGATGTTTACAGTTTTGCTCACCCTCATGCTGTTCATGGTGTAAAATTGATTGCTGcctaaagttttaattttttttttcagttgaattaatttaacttttctAAACATCTCAACTTATATTAAATAAGTTAATTCAAACAGCAAATTCACTTAAAGCTTGCATGTGGTGCAATGAAACAAATAGGAGATTCACAAACTGCaagtgagcaattccagcgttatggatgtgacatttgcagtaaaaactctaaacataaattcacatagaaagcatatgttaatattatattgaaacttttgtttatattttccagaacaactaaaCACAGACTTGAGGGACcagaaaaatagcaatctgtaaacatgtttagtactttaaatgtggaaaataaacacgcgttatggatgtgacaaaaaagtaaatattttattctacTTTTATGTGCTagcaattacagttgaagtcagaattattatccctcctgaattattagccccctctttattttttcacccaatttctgtttaacagagagattttttttttttaacacattgttaaacataatagttttaataactcatttccaagaactgatttattttatatttgccatgatgatggtaaataatattttactagatttattttttaggttaactaggcaggtttgtgTAATtgggaaagttattgtataatgatggtttgttgtcta
>TCONS_00060137
GGACGGGGAAGATAGCAAGACTTGCCTTCATAAGATGACATGCCAAGTTAAGCACAAGTGGTGATAGAGATCCGTTTACTCAGCAAATTGCCCGAGACTGTGGACTGGGTTCAGCGCTTTATTGTTTCAAATAAGAGTATAAGTGATTTATGGTGTACCCTGTGGACTTTAGTCAAGGGCTGAGCCGATCCTCACCAGAGTGAAAGAAGATCACACTAGGATAATCCTCCCTGCGATAGATAATATCAAGTACAATACCTTTGAGGTGCAGCAATACGCTAATGCGGCTCATGGCTACAACTGGGGCCTGTGGTGCATGTACATCATCCCGCCTCAGGATTGGCTGGACAGAGGAGATGAAACTGCTCCAATCAGGACTCCAGCAATGATCGGCTGCTCTTTTGTAGTGGATCGTGAATATTTTGGAGAGATCGGTCTGCTTGATCCGGGCATGGAGGTCTATGGAGGAGAGAACATTGAACTTGGGATGAGGGT
>TCONS_00060138
GTCCACCataaagctaataataataagaagaacatTTTCCGTCTAGCTTTGTTTGCATAACCCCAATTTAAgctcaccaaaattggacaatagaagtttggaaaaacgttgtctggtctgataagtctcgatttctgctgcagcattctgcagGTCTAGCCAAGCCCATGGGTCTGGTGGAGGGTCCTGGAGGTCTAGGACAGGGCGGTGCTGCTGCCACGCTGGGAGAGGACAGCCGGGAGACTGAAGGGAGATTCGAGGAGTATGGCTACAACGCTCAGCTGAGTGACCGCATCTCCTTGGACAGGAATATTCCGGACTACAGGCCCAAAAAGTGTAAGCAGCTGACCTACTCCGATGACCTTCCCCAGATCTCTGTGGTCTTCATCTTTGTGAACGAAGCTCTTTCTGTCATCCTTCGCTCAGTTCACAGCATGGTCAACCACACTCCGGCACATCTGCTCAAAGAAATCATCCTGGTGGATGACAACAGCGACAGCGTGGAGCTAAAGTTCAATCTGGATCATTATGTGAATAAACGATATCCTGGCCTGGTGAAGATCGTGAGGAACAGTAAGAGAGAAGGCCTCATTCGTGCCAGGATTCACGGCTGGAACGCAGCCACTGCTCCTGTTGTAGGCTTCTTTGACGCTCACGTGGAGTTCAACACAGCCTGGGCTGAGCCGATCCTCACCAGAGTGAAAGAAGATCACACTAGGATAATCCTCCCTGCGATAGATAATATCAAGTACAATACCTTTGAGGTGCAGCAATACGCTAATGCGGCTCATGGCTACAACTGGGGCCTGTGGTGCATGTACATCATCCCGCCTCAGGATTGGCTGGACAGAGGAGATGAAACTGCTCCAATCAGGACTCCAGCAATGATCGGCTGCTCTTTTGTAGTGGATCGTGAATATTTTGGAGAGATCGGTCTGCTTGATCCGGGCATGGAGGTCTATGGAGGAGAGAACATTGAACTTGGGATGAGG

Function

symbol description
galnt9 Predicted to enable carbohydrate binding activity and hexosyltransferase activity. Predicted to be involved in protein glycosylation. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Is expressed in hindbrain; midbrain; and telencephalon. Orthologous to human GALNT9 (polypeptide N-acetylgalactosaminyltransferase 9).

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016740 transferase activity molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function
GO:0030246 carbohydrate binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060526-21 Predicted to enable carbohydrate binding activity and hexosyltransferase activity. Predicted to be involved in protein glycosylation. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Is expressed in hindbrain; midbrain; and telencephalon. Orthologous to human GALNT9 (polypeptide N-acetylgalactosaminyltransferase 9).

Ensembl:

ensembl_id ENSDARG00000006832

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00060136 False 6124 mRNA 0.40 11 16797209 16983336
TCONS_00060137 False 495 processed_transcript 0.47 3 16862615 16890246
TCONS_00060138 True 992 mRNA 0.50 7 16862617 16996482

Neighbor

gene id symbol gene type direction distance location
XLOC_030931 atad1a coding downstream 5986 16677264 ~ 16791223 (-)
XLOC_030929 piwil2 coding downstream 321527 16428411 ~ 16475682 (-)
XLOC_030930 CR450719.1 coding downstream 351744 16445349 ~ 16445465 (-)
XLOC_030928 slc39a14 coding downstream 371428 16360209 ~ 16425781 (-)
XLOC_030927 NA coding downstream 440269 16352997 ~ 16356940 (-)
XLOC_030934 CR759970.1 coding upstream 44139 17040621 ~ 17041288 (-)
XLOC_030935 si:ch211-130h14.6 coding upstream 603388 17599870 ~ 17602206 (-)
XLOC_030936 si:dkey-112e17.1 coding upstream 852183 17848665 ~ 17876709 (-)
XLOC_030937 zdhhc8b coding upstream 884592 17881074 ~ 18007077 (-)
XLOC_030938 rnf215 coding upstream 1043572 18040054 ~ 18046053 (-)
XLOC_030926 NA non-coding downstream 445903 16279240 ~ 16351306 (-)
XLOC_030921 NA non-coding downstream 979652 15813775 ~ 15817557 (-)
XLOC_030920 BX649391.1 non-coding downstream 1062629 15734525 ~ 15734580 (-)
XLOC_030939 NA non-coding upstream 1292328 18288810 ~ 18289576 (-)
XLOC_030940 NA non-coding upstream 1321421 18317903 ~ 18424637 (-)
XLOC_030942 NA non-coding upstream 1787256 18783738 ~ 18784434 (-)
XLOC_030949 NA non-coding upstream 2012164 19008646 ~ 19008774 (-)

Expression


Co-expression Network