XLOC_030940


Basic Information

Item Value
gene id XLOC_030940
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 18317903 ~ 18424637 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00061968
CGTAGATCAACGGCAGACACACAGGCAAGAGCTGCCGAGAGGTGCCAAACGGCGCGTAGCACTTGACATGACGTGAATGGTCACGTGTTGGCCACCTTGGCGTTGTTGCTATTAATCTCTACACCTACCCGTGTCCTAAACGCGACGCATATCtcttgaatatatatgtatagtcTTTGATTTCATATTTTACGTCGGATTATGGTTTTGGTGTAGGCAATGACTGATGTTTTGAAAGGTGCACACCTGACATACAGTATAGCAGGCTACTATTAGTCCAAGTAAAAGCAGCCGCAGCACAAGGTAACTGTTAGCCAACGAAAAGATTTGTGTGCAGCAAATGTTGGCGAGATGTACTGTACACATTTCATTTGGACTGTTTCAACAAAAGATGGCACAAAAATACTCTGTAATGATCACCACTATCTTCCACTTGGACTTcaaagtcatttttcaaaatatggaGCCATTTTTCCCCTCTCAGAAATGATGGAACAGTCATTATGCTGCTGTTTCAGGAGGACAGAGAAAAGGTCTTGTGCCCattggaggatgagagagctctcatatttcatctaaaatatcttattgTGTGTTCCTAAGATGactgaaggtctcaggggatttaaacaacatgaggGCGCAAAGATTTATACATCAAGTGATAATAATCTTGCACTAAAAGCCTTTTCTATTCCGCCAAAT
>TCONS_00061969
CGTAGATCAACGGCAGACACACAGGCAAGAGCTGCCGAGAGGTGCCAAACGGCGCGTAGCACTTGACATGACGTGAATGGTCACGTGTTGGCCACCTTGGCGTTGTTGCTATTAATCTCTACACCTACCCGTGTCCTAAACGCGACGCATATCtcttgaatatatatgtatagtcTTTGATTTCATATTTTACGTCGGATTATGGTTTTGGTGTAGGCAATGACTGATGTTTTGAAAGGTGCACACCTGACATACAGTATAGCAGGCTACTATTAGTCCAAGTAAAAGCAGCCGCAGCACAAGGTAACTGTTAGCCAACGAAAAGATTTGTGTGCAGCAAATGTTGGCGAGATGTACTGTACACATTTCATTTGGACTGTTTCAACAAAAGATGGCACAAAAATACTCTGTAATGATCACCACTATCTTCCACTTGGACTTcaaagtcatttttcaaaatatggaGCCATTTTTCCCCTCTCAGAAATGATGGAACAGTCATTATGCTGCTGTTTCAGGAGGACAGAGAAAAGgggaaaccggagcacccggagattCAAGGGAATAGGGGGTGAACTTGCAAACTCAG
>TCONS_00061970
CGTAGATCAACGGCAGACACACAGGCAAGAGCTGCCGAGAGGTGCCAAACGGCGCGTAGCACTTGACATGACGTGAATGGTCACGTGTTGGCCACCTTGGCGTTGTTGCTATTAATCTCTACACCTACCCGTGTCCTAAACGCGACGCATATCtcttgaatatatatgtatagtcTTTGATTTCATATTTTACGTCGGATTATGGTTTTGGTGTAGGCAATGACTGATGTTTTGAAAGGTGCACACCTGACATACAGTATAGCAGGCTACTATTAGTCCAAGTAAAAGCAGCCGCAGCACAAGGTAACTGTTAGCCAACGAAAAGATTTGTGTGCAGCAAATGTTGGCGAGATGTACTGTACACATTTCATTTGGACTGTTTCAACAAAAGATGGCACAAAAATACTCTGTAATGATCACCACTATCTTCCACTTGGACTTcaaagtcatttttcaaaatatggaGCCATTTTTCCCCTCTCAGAAATGATGGAACAGTCATTATGCTGCTGTTTCAGGAGGACAGAGAAAAGTGTTGTTTTCTCAGAACATCAGCGGGATCATTTGCTACAGTTTCAAGCCCTCTTGACATGATGATGTAAAAATGATTGAGCAAAATGTTTTCGCTGGTTCCTCAGGAGAGGTTCTTTATACCTAATACTATGTATTTTAACATAATACAAAAT

Function

GO:

id name namespace
GO:0007191 adenylate cyclase-activating dopamine receptor signaling pathway biological_process
GO:0008988 rRNA (adenine-N6-)-methyltransferase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00061968 False 705 lncRNA 0.42 3 18317903 18424637
TCONS_00061969 False 589 lncRNA 0.44 2 18407381 18424637
TCONS_00061970 True 686 lncRNA 0.41 2 18422125 18424637

Neighbor

gene id symbol gene type direction distance location
XLOC_030939 NA coding downstream 28327 18288810 ~ 18289576 (-)
XLOC_030938 rnf215 coding downstream 271850 18040054 ~ 18046053 (-)
XLOC_030937 zdhhc8b coding downstream 310826 17881074 ~ 18007077 (-)
XLOC_030936 si:dkey-112e17.1 coding downstream 441194 17848665 ~ 17876709 (-)
XLOC_030935 si:ch211-130h14.6 coding downstream 715697 17599870 ~ 17602206 (-)
XLOC_030941 TMEM132C coding upstream 6764 18431401 ~ 18513950 (-)
XLOC_030942 NA coding upstream 359101 18783738 ~ 18784434 (-)
XLOC_030943 aacs coding upstream 402677 18827314 ~ 18897482 (-)
XLOC_030944 bri3bp coding upstream 480331 18904968 ~ 18911114 (-)
XLOC_030945 poli coding upstream 488313 18912950 ~ 18924834 (-)
XLOC_030934 CR759970.1 non-coding downstream 1276615 17040621 ~ 17041288 (-)
XLOC_030933 CR392021.1 non-coding downstream 1418856 16898923 ~ 16899047 (-)
XLOC_030930 CR450719.1 non-coding downstream 1872438 16445349 ~ 16445465 (-)
XLOC_030927 NA non-coding downstream 1960963 16352997 ~ 16356940 (-)
XLOC_030949 NA non-coding upstream 584009 19008646 ~ 19008774 (-)
XLOC_030951 NA non-coding upstream 888138 19312775 ~ 19315648 (-)
XLOC_030952 NA non-coding upstream 909569 19334206 ~ 19336527 (-)
XLOC_030959 NA non-coding upstream 1536043 19960680 ~ 19963556 (-)

Expression


Co-expression Network