Fish Transcriptome and Expression Database

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model fish

XLOC_030949

Basic Information

Item	Value
gene id	XLOC_030949
gene name	NA
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007116.7
NCBI id	CM002889.2
chromosome length	72500376
location	19008646 ~ 19008774 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00060159
GCAGACTCACTCTGTGTAAGGCAGATACCTCCAGCCTTAGACTTTTTCTGTCTGCTACATTAACTTGAAGATTGTTACAACCTGCCTTGCCTGTCACTTGGCAGGGTGACTGTACCTTCTCAGacattt

Function

GO: NA

KEGG:

id	description
ko03230	Viral genome structure
ko05164	Influenza A
ko03200	Viral proteins

Ensembl:

ensembl_id

ENSDARG00000086007

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00060159	True	129	snoRNA	0.46	1	19008646	19008774

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_030947	golga3	coding	downstream	2356	18965494 ~ 19006290 (-)
XLOC_030946	ankle2	coding	downstream	45852	18943043 ~ 18962794 (-)
XLOC_030945	poli	coding	downstream	83812	18912950 ~ 18924834 (-)
XLOC_030944	bri3bp	coding	downstream	97532	18904968 ~ 18911114 (-)
XLOC_030943	aacs	coding	downstream	111164	18827314 ~ 18897482 (-)
XLOC_030950	fam214b	coding	upstream	13012	19021786 ~ 19052497 (-)
XLOC_030951	NA	coding	upstream	304001	19312775 ~ 19315648 (-)
XLOC_030952	NA	coding	upstream	325432	19334206 ~ 19336527 (-)
XLOC_030953	foxn4	coding	upstream	376729	19385503 ~ 19400166 (-)
XLOC_030954	kctd10	coding	upstream	427709	19436483 ~ 19444949 (-)
XLOC_030942	NA	non-coding	downstream	224212	18783738 ~ 18784434 (-)
XLOC_030940	NA	non-coding	downstream	584009	18317903 ~ 18424637 (-)
XLOC_030939	NA	non-coding	downstream	719070	18288810 ~ 18289576 (-)
XLOC_030934	CR759970.1	non-coding	downstream	1967358	17040621 ~ 17041288 (-)
XLOC_030933	CR392021.1	non-coding	downstream	2109599	16898923 ~ 16899047 (-)
XLOC_030959	NA	non-coding	upstream	951906	19960680 ~ 19963556 (-)
XLOC_030961	NA	non-coding	upstream	1096234	20105008 ~ 20109265 (-)
XLOC_030967	NA	non-coding	upstream	1280585	20289359 ~ 20297439 (-)

Expression

Co-expression Network