XLOC_030952


Basic Information

Item Value
gene id XLOC_030952
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 19334206 ~ 19336527 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00061973
ctaacttgcacagcattgaatggaaaaggctttgtccatgtaagtttactttagctttaactaagctatctgttaaatcttcttgatgctttggttggtgatattctctttctaatctgtttgtttattgattgttaggctatgttgtgatattatattgttatattgatattattattgtgaaatcatgttgtgatgttatactatatgtgacagtattggggaacaaatatgtatttagttagaaattaatgcttaaattacactttgtatagtagcagataagaggtgtaatgggttttaattttctgggttttctggaaggtccagttgaggggCATCAAGAACACGCAGATGGCCTAAACCTGTGTCAGCCTGGACTGACTGCAGTTCTGCTATTCCACGccaaggcttttgtatggatgtctgactactactgtgttctctaaaggtattactggagcaaaacaacagcacctgttacagtgaaatttgtattcataaaaatagtgatacatgtgtagcaggtccagtacatgtgatgtcattgagaagttgtttttattaaatgtccttaaaacaaataaataaacatactatttaaataaatctaaatattaaaaacttgaggattaagatgAGAAATGAAATGAATCATCTGTCTTGCGAAAGGGGTGTActtaagaattctggtgttttccaactgaaagggatagttcaaccaagaatgaaaatttactcacattttactccccaaatggtttaaaaccattatgagtttattttgttgaacaaaaaaagaggctattctgaaaaaaaaactaaaaacctgtaaacattgacctccatagtagaaaaaaatactatagaagtcaatggttatagatttgcagctttcttcaaaatatcttcttttgtgttaaacgtggtcagtaaatgacgacagaataaacattttgaactatccctttaattatctgtcctacatgcagacttttgcagaagtgctactccttctagagtttttctcaaccatatgtctaaaaagcttcaaacagcttttacagtacatgtaatggtttacaacaacttgtaattattagatgtgttgaatgtttcatgattctttactgcagcctttgttaaaaaaaaatgtaatttttttgagaatctgaaatttgaattctggaaatgctggcaccggtggtggcgaagggcttcctgacgatatcacacctaattcttcacttctcttagttaggaatattcagatggatgagtcaaaattattgagtgtgacgatattataggacaaatttggattcaataaaaaataaatatttgaatttcactttgtataatagcagacaccaacttagttgtaacctcgtatttcatttattgcaggttttctggaagctccatttgaggtcatcaaggacatactgatggcctaaaccagt
>TCONS_00060165
acaGTGCATTAACTTATGTTAAACGCAACTCTGGattttaattaacaatattaTAACTAGCcccagccggcacacgaccgaccttcaacgttgaaatatggttgaaataaggtcagatgtgttttgaacgttgaaaaaatgttgatagaacgtttaatgttgaacggttgaaaaacagcctgcatatgacaaggcttcaacgttgaaatgtggttgaaaatacgtcagtagttgctttaatgttgaaaaaatgttgaatgataaatggttgaaaaaagttacagaaatccttgtacaaatcaacgttgacattttttaTCATGATCTGTATGTTGAATAAACGTCATGTCTTCACCCAAcattcaacatgtttggttaccatggtatcggaggactaggcgcacgcggccacgcgcagcgcttcacttcacttaattacgaacacctgacctgcagtgcagcagaattcagagagatgtaacttactccagagacgcactaacttgcacagcattgaatggaaaaggctttgtccatgtccagttgaggggCATCAAGAACACGCAGATGGCCTAAACCTGTGTCAGCCTGGACTGACTGCAGTTCTGCTATTCCACGccaaggcttttgtatggatgtctgactactactgtgttctctaaaggttttctggaagctccatttgaggtcatcaaggacatactgatggcctaaaccagt

Function

GO:

id name namespace
GO:0048729 tissue morphogenesis biological_process
GO:0048731 system development biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0021546 rhombomere development biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007519 skeletal muscle tissue development biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0048513 animal organ development biological_process
GO:0021593 rhombomere morphogenesis biological_process
GO:0021594 rhombomere formation biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0032925 regulation of activin receptor signaling pathway biological_process
GO:0032926 negative regulation of activin receptor signaling pathway biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0035050 embryonic heart tube development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0048568 embryonic organ development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0048859 formation of anatomical boundary biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:0021654 rhombomere boundary formation biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0061061 muscle structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032502 developmental process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0009790 embryo development biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000092739

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00061973 False 1463 lncRNA 0.33 1 19334206 19335668
TCONS_00060165 True 720 processed_transcript 0.41 4 19334206 19336527

Neighbor

gene id symbol gene type direction distance location
XLOC_030951 NA coding downstream 18558 19312775 ~ 19315648 (-)
XLOC_030950 fam214b coding downstream 281709 19021786 ~ 19052497 (-)
XLOC_030948 ranbp1 coding downstream 319617 19006701 ~ 19014589 (-)
XLOC_030949 NA coding downstream 325432 19008646 ~ 19008774 (-)
XLOC_030947 golga3 coding downstream 327916 18965494 ~ 19006290 (-)
XLOC_030953 foxn4 coding upstream 48976 19385503 ~ 19400166 (-)
XLOC_030954 kctd10 coding upstream 99956 19436483 ~ 19444949 (-)
XLOC_030955 mmab coding upstream 153054 19489581 ~ 19494048 (-)
XLOC_030956 trpv4 coding upstream 459450 19795977 ~ 19833310 (-)
XLOC_030957 gltpa coding upstream 514301 19850828 ~ 19861766 (-)
XLOC_030942 NA non-coding downstream 549772 18783738 ~ 18784434 (-)
XLOC_030940 NA non-coding downstream 909569 18317903 ~ 18424637 (-)
XLOC_030939 NA non-coding downstream 1044630 18288810 ~ 18289576 (-)
XLOC_030959 NA non-coding upstream 624153 19960680 ~ 19963556 (-)
XLOC_030961 NA non-coding upstream 768481 20105008 ~ 20109265 (-)
XLOC_030967 NA non-coding upstream 952832 20289359 ~ 20297439 (-)
XLOC_030968 AL845326.1 non-coding upstream 1072309 20408836 ~ 20408952 (-)
XLOC_030969 NA non-coding upstream 1080195 20416722 ~ 20420371 (-)

Expression


Co-expression Network