XLOC_030997 (BX546499.2)



Basic Information


Item Value
gene id XLOC_030997
gene name BX546499.2
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 22435786 ~ 22438595 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00060225
CAGAGTACAGATTATGGAGGTATCTGAAGTTGAACTAACTGGAAGCAGGGAACCATACTAATAAAGTTCCTTAagCAGGTTCCTTGTAAAGATGAACCCAGGGAAGGATCGAAAGTGGAGAAGACCAGATCAAGAAAGACCACATCAAGATCTGCGGTCAGTTCAAAGGATGTTTTGcattggactgtttttttttttggctttgaccCTTGCTCGACCCTGACCTCACTCTTGGACTGCCCTATtggattttcagtttatttaatttaattaattaatttttttttggttctgggtaaatgctaataaatatttagttgtaattatttaagtaatatgtttttgttaaatatgcgatttctgtgtttgttctgtctactcatac
>TCONS_00060226
tgttgcctcccagcaaaaatgtttctggttcgagcctcggctgggtcagttggcatttctgtgtgaagtttgcatgttctccccgtgttggcgtgggtttcctccgggtgctccggtttcccccacaagacatgcggtacaggtgaattggctcagattgtgatggacctggaatgcgacaccagttactcttaagtcaagaaccaaatgaaGCACCAGAGTACAGATTATGGAGGTTCCTTGTAAAGATGAACCCAGGGAAGGATCGAAAGTGGAGAAGACCAGATCAAGAAAGACCACATCAAGATCTG

Function


GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000093947

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00060225 False 385 processed_transcript 0.36 3 22435786 22437983
TCONS_00060226 True 311 processed_transcript 0.50 3 22437311 22438595

Neighbor


gene id symbol gene type direction distance location
XLOC_030996 GPR83 coding downstream 65870 22363015 ~ 22369916 (-)
XLOC_030995 NA coding downstream 200628 22230690 ~ 22235158 (-)
XLOC_030994 las1l coding downstream 304849 22115250 ~ 22130937 (-)
XLOC_030993 CR812469.1 coding downstream 338878 22087656 ~ 22096908 (-)
XLOC_030992 zc4h2 coding downstream 352868 22073710 ~ 22082918 (-)
XLOC_030998 NA coding upstream 15235 22453830 ~ 22455994 (-)
XLOC_030999 NA coding upstream 16971 22455566 ~ 22457289 (-)
XLOC_031000 sptbn4a coding upstream 26491 22465086 ~ 22501663 (-)
XLOC_031001 NA coding upstream 67850 22506445 ~ 22510064 (-)
XLOC_031002 glra4b coding upstream 76752 22515347 ~ 22544151 (-)
XLOC_030987 NA non-coding downstream 501508 21926822 ~ 21934278 (-)
XLOC_030984 NA non-coding downstream 583559 21609358 ~ 21852227 (-)
XLOC_031008 NA non-coding upstream 518300 22956895 ~ 22974641 (-)
XLOC_031012 BX640521.1 non-coding upstream 784106 23222701 ~ 23222819 (-)
XLOC_030985 CR848717.1 non-coding downstream 698441 21736359 ~ 21737345 (-)

Expression



Co-expression Network