Fish Transcriptome and Expression Database

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model fish

XLOC_031001

Basic Information

Item	Value
gene id	XLOC_031001
gene name	NA
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007116.7
NCBI id	CM002889.2
chromosome length	72500376
location	22506445 ~ 22510064 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00061530
CTCCaactgcgtcagataaacagcacagtgacagacatgatggAAGCAGATTTCACGTAACATTTGtgggaaatactacaGAATGGAAATGCATTTTTCCCATATCGCAGTGGAGCATGCTGTCCACAGGGGGGCGTCCAACAGCTGAAGGCTTCTGCATTGATTTTGATTGTGATAGAAGACAAGTTTATGCTGACATCCAGGG

Function

GO: NA

KEGG:

id	description
ko03230	Viral genome structure
ko05164	Influenza A
ko03200	Viral proteins

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00061530	True	205	lncRNA	0.45	2	22506445	22510064

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_031000	sptbn4a	coding	downstream	4782	22465086 ~ 22501663 (-)
XLOC_030999	NA	coding	downstream	49156	22455566 ~ 22457289 (-)
XLOC_030998	NA	coding	downstream	50451	22453830 ~ 22455994 (-)
XLOC_030997	BX546499.2	coding	downstream	67850	22435786 ~ 22438595 (-)
XLOC_030996	GPR83	coding	downstream	136529	22363015 ~ 22369916 (-)
XLOC_031002	glra4b	coding	upstream	5283	22515347 ~ 22544151 (-)
XLOC_031003	aifm1	coding	upstream	40550	22550614 ~ 22573673 (-)
XLOC_031004	casp22	coding	upstream	75205	22585269 ~ 22602979 (-)
XLOC_031005	zgc:113208	coding	upstream	95466	22605530 ~ 22621417 (-)
XLOC_031006	apool	coding	upstream	341793	22851857 ~ 22868650 (-)
XLOC_030995	NA	non-coding	downstream	271287	22230690 ~ 22235158 (-)
XLOC_030993	CR812469.1	non-coding	downstream	409537	22087656 ~ 22096908 (-)
XLOC_031008	NA	non-coding	upstream	446831	22956895 ~ 22974641 (-)
XLOC_031012	BX640521.1	non-coding	upstream	712637	23222701 ~ 23222819 (-)
XLOC_031015	CT025748.1	non-coding	upstream	821089	23331153 ~ 23341623 (-)
XLOC_031017	NA	non-coding	upstream	936180	23446244 ~ 23456234 (-)
XLOC_031029	BX957257.2	non-coding	upstream	1247869	23757933 ~ 23758587 (-)

Expression

Co-expression Network