XLOC_031003 (aifm1)


Basic Information

Item Value
gene id XLOC_031003
gene name aifm1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 22550614 ~ 22573673 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00060229
ACAGCTCCACTGCGATGTTCAAGTGCAAGACAGTATGGAATAAGCTGGCTCCGCTGGCCCGGGCCTCGTCCACGTTGTGTCTGCAGAATGCGAGGAAATCAGTCCTGAGACATGGCAGAAGGCTGGAGATGGTTCAGAGGGCCCAGATGTCATCGGGGCCGCCAGGAGGTGGTGGGGAAAATGCTGTGTATTTTGTCCTGGTTGGAGCAGCATGTCTGGGGGGAGGCATTTATgcATACCGCACCGTCTCGCAGGACAGTGAAAGGTATAATGAGCGTATGAGACAAATTGCCAGTCGACAAAGTCAAGAGTCGAAGCCTGCTAAAGCTTTAGcTGAAGTTGCAGAATCAAAGGAAGAACCTGTTGCTGAAGAACCAACTCTGATAGAACCCGCTGTTGAAGAATCTCCAGTAACAGAAGATATTGTGGAGTCACCTGAAGCTGTGGCAGAACCTATTGTAAAATCGTCTATTCCAGAACCCGCTGTGGAAATTGCAGTAACAGAACCTGTTGTCGAAGCCTCTGTTCCGGAATCCGTTATTGAATCCCCATTAATGGAACCCGTTGTTGAAGCCTCTGTTCAGGAACCCATTATTGAAGCTACAGCAACGGAAACTGTTGCAGAAGCTCCTGAAGTTATACAGAGTGAAGAGCCAATAGCTCCTGTGGTTGAGAGTGAGCCTGTACCTGTAGTCAGCACCGAGCATGTTCCAGAGGCTTCATCTGTTTCTGAGAGTGGTAAGACTCCTGAGACTAGTCCTGCTGCTGCTCCTGCTGCAGAGCCGATTGATCCCACTGCTCCTCACCTGGATGTTCTTGAACACGCTCCATACCTGCTCATAGGTGGAGGCACGGCTTCATTCGCTGCAGCTCGCTCCATTCGTGCACGTGACCCTGGTGCCAGGGTGTTGATTATCACAGAGGAGTCAGACCTGCCCTACATGAGACCTCCTCTCTCTAAAGAGCTCTGGTTCTCTGATGATCCCAAAGTCACAGAATCACTGCGCTTCAAACagtggaacggcaaagaaaggaGTATTTACTTCCAGCCTCCCTCATTCTACGTCAGTCCTGCAGATCTTGCCAAGGTGGAGAACGGTGGTGTGGCTGTGCTCACCGACAGTAAGGTGGTGCACATGGATGTCAGAGGAAATAAAGTCAAGCTGAGTGATGGTTCAGAGATCTCCTATGAGAAGTGCCTCATTGCCACAGGTGGGGTGCCGAGGAACCTGCAGGTTATTGACAGAGCAGGAGAAGAGGTCATTAAGAGGACAACCCTCTTTAGAAAAATTGAAGATTTTAGATCTCTAGAGAAGATCTCCAGAGAGGTTAAGTCCATTACCATCATCGGTGGAGGTTTTCTCGGTAGCGAGCTTGCATGTGCCTTGGGTCGCAGATCTGCTGACCCTGGTTTAGAGGTGATGCAGCTCTTCCCAGAGAAGGGTAACATGGGAAAAGTGCTGCCTGAATACTTGAGTAACTGGACCACTGAGAAAGTCCGGAAAGAGGGTGTAAATGTAATTACGGATGCTGTAGTAAAAAATGTGACctacaaaaatgacaaattggAGATCAAGCTAAAGGACGGACGACTGGTGAAAACAGACCACATAGTGGCAGCAGTTGGTTTGGAGCCCAGTGTGGAGCTTGCCAAATCAGCCGGGCTGGAAGTGGACTCTGATTTCGGAGGCTATCGGGTTAATGCTGAGCTCCAGGCTCGCTCTAACATCTGGGTGgCAGGAGATGCTGCATGTTTCTATGACATTAAGCTGGGCCGCCGGCGTGTGGAGCATCATGATCACGCAGTGGTCAGTGGCAGACTGGCCGGTGAAAACATGACCGGAGCCAACAAACCCTACTGGCATCAGTCTATGTTCTGGAGCGATCTTGGACCAGATGTAGGATATGAAGCCATTGGTATAGTGGACAGCAGTCTGCCCACTGTTGGAGTGTTTGCTAAAGCCACAGCCAAGGACACACCAAAAGCTGCTACTGAACAATCAGGAACCGGAATCCGCTCAGAGAGTGAGACGGAGGCAGTTGCTGGAGTGTTGGAGGTGGGAACAGTGACCCCCGCACCTCCTGTCCAGCAGAAGGAGGATTATGGGAAGGGAATAATATTTTATCTGAGGGACAAGGTGGTGGTTGGTATCGTTCTGTGGAATGTCTTCAACAGAATGCCCATTGCAAGGAAGATAATCAAAGATGGAGAGGCACATACAGATCTGAATGAGGTGGCCAAGCTTTTCAACATTCACGAAGACTGAACGGTCTTCATTTTCTTTGTTCTCTTTCCACTGTCAGTTTGAAGTGAacttggacacacacacacacacacacacacacacacacacacacacacatgcacacaaaacaaacacGAATGCTTGCAGCAGCCTGTCATCTGACCTTGAAGGCTGAGGTCAGGACATGCAGTGCTGCCTATCGGCTGCAAGTTGGCGCTGTGATTTCATTGCGCCCATGAATTGGTTAAAACCATTATTCAATTTTCTACTGAGGGAAACTTTTCCTGTTGTTTGTATTGAAAAAGTTGTgctgtttctttttctgttgaggTCAGTAAATGTTCATCTCTTCTTGAATGCATCCCTTTTCAAACATTTCCTCCAAAGCCTCAAAACCAGACAGGAAATCCACTTTCAATGATTATGGCATTAATGTTTCATATCCAATCAAACAAAACCAAGTGAAAGACATTCCTCTGACACCTGGTGGTTTTTCTGCCTGCACGATACAAAGCAGCTGGTACAAatgaaaactgaataaaaataaattattttaattata
>TCONS_00060230
ACAGCTCCACTGCGATGTTCAAGTGCAAGACAGTATGGAATAAGCTGGCTCCGCTGGCCCGGGCCTCGTCCACGTTGTGTCTGCAGAATGCGAGGAAATCAGTCCTGAGACATGGCAGAAGGCTGGAGATGGTTCAGAGGGCCCAGATGTCATCGGGGCCGCCAGGAGGTGGTGGGGAAAATGCTGTGTATTTTGTCCTGGTTGGAGCAGCATGTCTGGGGGGAGGCATTTATgcATACCGCACCGTCTCGCAGGACAGTGAAAGGTATAATGAGCGTATGAGACAAATTGCCAGTCGACAAAGTCAAGAGTCGAAGCCTGCTAAAGCTTTAGcTGAAGTTGCAGAATCAAAGGAAGAACCTGTTGCTGAAGAACCAACTCTGATAGAACCCGCTGTTGAAGAATCTCCAGTAACAGAAGATATTGTGGAGTCACCTGAAGCTGTGGCAGAACCTATTGTAAAATCGTCTATTCCAGAACCCGCTGTGGAAATTGCAGTAACAGAACCTGTTGTCGAAGCCTCTGTTCCGGAATCCGTTATTGAATCCCCATTAATGGAACCCGTTGTTGAAGCCTCTGTTCAGGAACCCATTATTGAAGCTACAGCAACGGAAACTGTTGCAGAAGCTCCTGAAGTTATACAGAGTGAAGAGCCAATAGCTCCTGTGGTTGAGAGTGAGCCTGTACCTGTAGTCAGCACCGAGCATGTTCCAGAGGCTTCATCTGTTTCTGAGAGTGCTGCAGCTCCTGAGACTAGTCCTGCTGCTGCTCCTGCTGCAGAGCCGATTGATCCCACTGCTCCTCACCTGGATGTTCTTGAACACGCTCCATACCTGCTCATAGGTGGAGGCACGGCTTCATTCGCTGCAGCTCGCTCCATTCGTGCACGTGACCCTGGTGCCAGGGTGTTGATTATCACAGAGGAGTCAGACCTGCCCTACATGAGACCTCCTCTCTCTAAAGAGCTCTGGTTCTCTGATGATCCCAAAGTCACAGAATCACTGCGCTTCAAACagtggaacggcaaagaaaggaGTATTTACTTCCAGCCTCCCTCATTCTACGTCAGTCCTGCAGATCTTGCCAAGGTGGAGAACGGTGGTGTGGCTGTGCTCACCGACAGTAAGGTGGTGCACATGGATGTCAGAGGAAATAAAGTCAAGCTGAGTGATGGTTCAGAGATCTCCTATGAGAAGTGCCTCATTGCCACAGGTGGGGTGCCGAGGAACCTGCAGGTTATTGACAGAGCAGGAGAAGAGGTCATTAAGAGGACAACCCTCTTTAGAAAAATTGAAGATTTTAGATCTCTAGAGAAGATCTCCAGAGAGGTTAAGTCCATTACCATCATCGGTGGAGGTTTTCTCGGTAGCGAGCTTGCATGTGCCTTGGGTCGCAGATCTGCTGACCCTGGTTTAGAGGTGATGCAGCTCTTCCCAGAGAAGGGTAACATGGGAAAAGTGCTGCCTGAATACTTGAGTAACTGGACCACTGAGAAAGTCCGGAAAGAGGGTGTAAATGTAATTACGGATGCTGTAGTAAAAAATGTGACctacaaaaatgacaaattggAGATCAAGCTAAAGGACGGACGACTGGTGAAAACAGACCACATAGTGGCAGCAGTTGGTTTGGAGCCCAGTGTGGAGCTTGCCAAATCAGCCGGGCTGGAAGTGGACTCTGATTTCGGAGGCTATCGGGTTAATGCTGAGCTCCAGGCTCGCTCTAACATCTGGGTGgCAGGAGATGCTGCATGTTTCTATGACATTAAGCTGGGCCGCCGGCGTGTGGAGCATCATGATCACGCAGTGGTCAGTGGCAGACTGGCCGGTGAAAACATGACCGGAGCCAACAAACCCTACTGGCATCAGTCTATGTTCTGGAGCGATCTTGGACCAGATGTAGGATATGAAGCCATTGGTATAGTGGACAGCAGTCTGCCCACTGTTGGAGTGTTTGCTAAAGCCACAGCCAAGGACACACCAAAAGCTGCTACTGAACAATCAGGAACCGGAATCCGCTCAGAGAGTGAGACGGAGGCAGTTGCTGGAGTGTTGGAGGTGGGAACAGTGACCCCCGCACCTCCTGTCCAGCAGAAGGAGGATTATGGGAAGGGAATAATATTTTATCTGAGGGACAAGGTGGTGGTTGGTATCGTTCTGTGGAATGTCTTCAACAGAATGCCCATTGCAAGGAAGATAATCAAAGATGGAGAGGCACATACAGATCTGAATGAGGTGGCCAAGCTTTTCAACATTCACGAAGACTGAACGGTCTTCATTTTCTTTGTTCTCTTTCCACTGTCAGTTTGAAGTGAacttggacacacacacacacacacacacacacacacacacacacacacatgcacacaaaacaaacacGAATGCTTGCAGCAGCCTGTCATCTGACCTTGAAGGCTGAGGTCAGGACATGCAGTGCTGCCTATCGGCTGCAAGTTGGCGCTGTGATTTCATTGCGCCCATGAATTGGTTAAAACCATTATTCAATTTTCTACTGAGGGAAACTTTTCCTGTTGTTTGTATTGAAAAAGTTGTgctgtttctttttctgttgaggTCAGTAAATGTTCATCTCTTCTTGAATGCATCCCTTTTCAAACATTTCCTCCAAAGCCTCAAAACCAGACAGGAAATCCACTTTCAATGATTATGGCATTAATGTTTCATATCCAATCAAACAAAACCAAGTGAAAGACATTCCTCTGACACCTGGTGGTTTTTCTGCCTGCACGATACAAAGCAGCTGGTACAAatgaaaactgaataaaaataaattattttaatt
>TCONS_00060231
GCACGGTAAGCGTGGCTGTGAATTTCCTCAGACTGTTCCACAGAGAAGCACAGCTCCACTGCGATGTTCAAGTGCAAGACAGTATGGAATAAGCTGGCTCCGCTGGCCCGGGCCTCGTCCACGTTGTGTCTGCAGAATGCGAGGAAATCAGTCCTGAGACATGGCAGAAGGCTGGAGATGGTTCAGAGGGCCCAGATGTCATCGGGGCCGCCAGGAGGTGGTGGGGAAAATGCTGTGTATTTTGTCCTGGTTGGAGCAGCATGTCTGGGGGGAGGCATTTATgcATACCGCACCGTCTCGCAGGACAGTGAAAGGTATAATGAGCGTATGAGACAAATTGCCAGTCGACAAAGTCAAGAGTCGAAGCCTGCTAAAGCTTTAGCTCCTGAGACTAGTCCTGCTGCTGCTCCTGCTGCAGAGCCGATTGATCCCACTGCTCCTCACCTGGATGTTCTTGAACACGCTCCATACCTGCTCATAGGTGGAGGCACGGCTTCATTCGCTGCAGCTCGCTCCATTCGTGCACGTGACCCTGGTGCCAGGGTGTTGATTATCACAGAGGAGTCAGACCTGCCCTACATGAGACCTCCTCTCTCTAAAGAGCTCTGGTTCTCTGATGATCCCAAAGTCACAGAATCACTGCGCTTCAAACagtggaacggcaaagaaaggaGTATTTACTTCCAGCCTCCCTCATTCTACGTCAGTCCTGCAGATCTTGCCAAGGTGGAGAACGGTGGTGTGGCTGTGCTCACCGACAGTAAGGTGGTGCACATGGATGTCAGAGGAAATAAAGTCAAGCTGAGTGATGGTTCAGAGATCTCCTATGAGAAGTGCCTCATTGCCACAGGTGGGGTGCCGAGGAACCTGCAGGTTATTGACAGAGCAGGAGAAGAGGTCATTAAGAGGACAACCCTCTTTAGAAAAATTGAAGATTTTAGATCTCTAGAGAAGATCTCCAGAGAGGTTAAGTCCATTACCATCATCGGTGGAGGTTTTCTCGGTAGCGAGCTTGCATGTGCCTTGGGTCGCAGATCTGCTGACCCTGGTTTAGAGGTGATGCAGCTCTTCCCAGAGAAGGGTAACATGGGAAAAGTGCTGCCTGAATACTTGAGTAACTGGACCACTGAGAAAGTCCGGAAAGAGGGTGTAAATGTAATTACGGATGCTGTAGTAAAAAATGTGACctacaaaaatgacaaattggAGATCAAGCTAAAGGACGGACGACTGGTGAAAACAGACCACATAGTGGCAGCAGTTGGTTTGGAGCCCAGTGTGGAGCTTGCCAAATCAGCCGGGCTGGAAGTGGACTCTGATTTCGGAGGCTATCGGGTTAATGCTGAGCTCCAGGCTCGCTCTAACATCTGGGTGgCAGGAGATGCTGCATGTTTCTATGACATTAAGCTGGGCCGCCGGCGTGTGGAGCATCATGATCACGCAGTGGTCAGTGGCAGACTGGCCGGTGAAAACATGACCGGAGCCAACAAACCCTACTGGCATCAGTCTATGTTCTGGAGCGATCTTGGACCAGATGTAGGATATGAAGCCATTGGTATAGTGGACAGCAGTCTGCCCACTGTTGGAGTGTTTGCTAAAGCCACAGCCAAGGACACACCAAAAGCTGCTACTGAACAATCAGGAACCGGAATCCGCTCAGAGAGTGAGACGGAGGCAGTTGCTGGAGTGTTGGAGGTGGGAACAGTGACCCCCGCACCTCCTGTCCAGCAGAAGGAGGATTATGGGAAGGGAATAATATTTTATCTGAGGGACAAGGTGGTGGTTGGTATCGTTCTGTGGAATGTCTTCAACAGAATGCCCATTGCAAGGAAGATAATCAAAGATGGAGAGGCACATACAGATCTGAATGAGGTGGCCAAGCTTTTCAACATTCACGAAGACTGAACGGTCTTCATTTTCTTTGTTCTCTTTCCACTGTCAGTTTGAAGTGAacttggacacacacacacacacacacacacacacacacacacacacacatgcacacaaaacaaacacGAATGCTTGCAGCAGCCTGTCATCTGACCTTGAAGGCTGAGGTCAGGACATGCAGTGCTGCCTATCGGCTGCAAGTTGGCGCTGTGATTTCATTGCGCCCATGAATTGGTTAAAACCATTATTCAATTTTCTACTGAGGGAAACTTTTCCTGTTGTTTGTATTGAAAAAGTTGTgctgtttctttttctgttgaggTCAGTAAATGTTCATCTCTTCTTGAATGCATCCCTTTTCAAACATTTCCTCCAAAGCCTCAAAACCAGACAGGAAATCCACTTTCAATGATTATGGCATTAATGTTTCATATCCAATCAAACAAAACCAAGTGAAAGACATTCCTCTGACACCTGGTGGTTTTTCTGCCTGCACGATACAAAGCAGCTGGTACAAatgaaaactgaataaaaataaattattttaatt
>TCONS_00060232
ACAGCTCCACTGCGATGTTCAAGTGCAAGACAGTATGGAATAAGCTGGCTCCGCTGGCCCGGGCCTCGTCCACGTTGTGTCTGCAGAATGCGAGGAAATCAGTCCTGAGACATGGCAGAAGGCTGGAGATGGTTCAGAGGGCCCAGATGTCATCGGGGCCGCCAGGAGGTGGTGGGGAAAATGCTGTGTATTTTGTCCTGGTTGGAGCAGCATGTCTGGGGGGAGGCATTTATgcATACCGCACCGTCTCGCAGGACAGTGAAAGGTATAATGAGCGTATGAGACAAATTGCCAGTCGACAAAGTCAAGAGTCGAAGCCTGCTAAAGCTTTAGCTCCTGAGACTAGTCCTGCTGCTGCTCCTGCTGCAGAGCCGATTGATCCCACTGCTCCTCACCTGGATGTTCTTGAACACGCTCCATACCTGCTCATAGGTGGAGGCACGGCTTCATTCGCTGCAGCTCGCTCCATTCGTGCACGTGACCCTGGTGCCAGGGTGTTGATTATCACAGAGGAGTCAGACCTGCCCTACATGAGACCTCCTCTCTCTAAAGAGCTCTGGTTCTCTGATGATCCCAAAGTCACAGAATCACTGCGCTTCAAACagtggaacggcaaagaaaggaGTATTTACTTCCAGCCTCCCTCATTCTACGTCAGTCCTGCAGATCTTGCCAAGGTGGAGAACGGTGGTGTGGCTGTGCTCACCGACAGTAAGGTGGTGCACATGGATGTCAGAGGAAATAAAGTCAAGCTGAGTGATGGTTCAGAGATCTCCTATGAGAAGTGCCTCATTGCCACAGgt

Function

symbol description
aifm1 Predicted to enable flavin adenine dinucleotide binding activity; oxidoreductase activity; and protein dimerization activity. Predicted to act upstream of or within apoptotic process. Predicted to be located in membrane and mitochondrion. Predicted to be integral component of membrane. Is expressed in several structures, including alar plate midbrain region; digestive system; hatching gland; musculature system; and polster. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease X-linked recessive 4; X-linked deafness 5; and combined oxidative phosphorylation deficiency 6. Orthologous to human AIFM1 (apoptosis inducing factor mitochondria associated 1).

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016491 oxidoreductase activity molecular_function
GO:0050660 flavin adenine dinucleotide binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
ko04210 Apoptosis
ko04214 Apoptosis - fly
ko04217 Necroptosis

ZFIN:

id description
ZDB-GENE-030826-11 Predicted to enable flavin adenine dinucleotide binding activity; oxidoreductase activity; and protein dimerization activity. Predicted to act upstream of or within apoptotic process. Predicted to be located in membrane and mitochondrion. Predicted to be integral component of membrane. Is expressed in several structures, including alar plate midbrain region; digestive system; hatching gland; musculature system; and polster. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease X-linked recessive 4; X-linked deafness 5; and combined oxidative phosphorylation deficiency 6. Orthologous to human AIFM1 (apoptosis inducing factor mitochondria associated 1).

Ensembl:

ensembl_id ENSDARG00000058088

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00060229 False 2808 mRNA 0.48 19 22550614 22573624
TCONS_00060230 False 2805 mRNA 0.48 19 22550617 22573624
TCONS_00060231 False 2443 mRNA 0.49 16 22550617 22573673
TCONS_00060232 True 803 mRNA 0.53 7 22557349 22573624

Neighbor

gene id symbol gene type direction distance location
XLOC_031002 glra4b coding downstream 6463 22515347 ~ 22544151 (-)
XLOC_031001 NA coding downstream 40550 22506445 ~ 22510064 (-)
XLOC_031000 sptbn4a coding downstream 48951 22465086 ~ 22501663 (-)
XLOC_030999 NA coding downstream 93325 22455566 ~ 22457289 (-)
XLOC_030998 NA coding downstream 94620 22453830 ~ 22455994 (-)
XLOC_031004 casp22 coding upstream 11596 22585269 ~ 22602979 (-)
XLOC_031005 zgc:113208 coding upstream 31857 22605530 ~ 22621417 (-)
XLOC_031006 apool coding upstream 278184 22851857 ~ 22868650 (-)
XLOC_031007 si:ch211-26b3.4 coding upstream 298045 22871718 ~ 22952156 (-)
XLOC_031008 NA coding upstream 383222 22956895 ~ 22974641 (-)
XLOC_030997 BX546499.2 non-coding downstream 112019 22435786 ~ 22438595 (-)
XLOC_030995 NA non-coding downstream 315456 22230690 ~ 22235158 (-)
XLOC_031012 BX640521.1 non-coding upstream 649028 23222701 ~ 23222819 (-)
XLOC_031015 CT025748.1 non-coding upstream 757480 23331153 ~ 23341623 (-)
XLOC_031017 NA non-coding upstream 872571 23446244 ~ 23456234 (-)
XLOC_031029 BX957257.2 non-coding upstream 1184260 23757933 ~ 23758587 (-)

Expression


Co-expression Network