XLOC_031005 (zgc:113208)


Basic Information

Item Value
gene id XLOC_031005
gene name zgc:113208
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 22605530 ~ 22621417 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00060238
ctcctccacactgtcccgtgatgacaaccatacatacgtttttgtaggcattaaataaaggatatttaatattttttgacggtataacggtattgaaactgacaccgtttctatttttagatcccgcggtataccataataccgtaataccgcccaagcctagttaCGTGAAGTATTTTTCTAAGCAAAGGGCCATTGTGTCTGTACAACGCAGTTCTTGTTAAACCAGCCTGCTTCAGCGAACTTACAAAGTCATTCAACAATGAGCGACGAAGATGAGAGACACAGAAAGAAGATGAAAAGAAAAACCTGTACGGGTGATTCAAAGTCGCCCGCGAAgaagaaacagaaaataaaagacaaaagcgAGGAAAAGAGCCACGCAGTTCAGAAACACGacgCTATTGGTGGTAAAGCTGACTCTACAAAAACCAAAGTGAAGCTCTCTGGCAAAGACAAGGACAAAGGGAAAATAAGTAAATCTGCCCACTCAACAGAATGGACTGAGAATGATAAGAAAAGCAGCTCCGATGGTGGCAAAAAGCAAATAAAGAGAAATGAAAAAGGACAACTTCTTTTTAAAGACCACCCGGAGTTCACACCTAACATGACTCCCAAAGAGGTTTTACAGGCTGGCAGTTTTGGGGGCACCTATTTCAGGCCGATCTACTCCAGTATCACAAagaAACATTATAAAGATGTTTGGAAGGAGCTTCCCGAAGACTGGCTGGATGGACTAAACATCCCTGAGCAGGTGGCTTCATCCACATACCGGGAAAAAGTGAACACCTATAAAGTCAAATGTGGCGGCAGTTTGGAGATGTGGGAAAGCAGTGGCTGGATTGTGCCTCAGGATCCATACGGCTGGTTCCAATGGTACTGCAGGTTTTACCAGGGCAGGCGGACAGAGGACGATGCTCGTCAAATCAGTCGCTGGTCCAAATGTGCAGGAGTCAAAGGCCGGTGGCGGAACAACCTCATCACGAAAGTGGTCCGGTCCGGTTGTGCTTACGACAACGTTACTGTTTCCCCAGTGGTCAGACAGACTCTACAGCACTGGGGGTACAAACTCACCCCGGAGGACTACAAGCAAGGAGCAAAGAGAGTCAAGCTCAAATAAACAGGTCTTATTTGTTTGAGTACAATGCGGAATTGGGGGATTTTAGCTGTTATTAGTGCATGACGTGTCTATTTTAATAATTGATGTTTTGTCTGACTGGGGGACTTGACTAGCTGTGGTAATACTACTGCTGTGTTTGGTTCCCATTGGACATGTTTTGGGAAACTGAAAGGTGACTTCAATAATtcataaatatcttatttttaaatTGGGATCTCAGGCAGAAGCAGATGCAGACACTCCTTATTTTGTTCCTATTACTGATTTGCATAGCTGAACACCACATGTGCCTTGGAGCAATATAGCGAACTGATTTGTGATCGGATGTGGTCATCGTCACACTGATTTTATGACAGTAATTTGTTCtgctgtgtttatttttaatacatggtGAAGATGCTTACATATTTGCATAATAAGATGCCTCCTGACATGTCTCTGACAGTGTGTGTGGgggtgtatatacacacacacatctgtaatattttaatgcaGTTTATTAAAGGGATTATTTTGTatcttgttctttttttctttatttctatttaCCCGCAATTACACGTTCCTTTCTTTAATTATGTTATAGCATAATATCAGGGTGTTCGCAGGGTCTTAAAGtgtcttaaatcttaaaatcAAAGTTTTAggcattaaaaagtcttaaatttattaaaacattgtgttgtaggtcttaaatcttttttttgaacaggtcttaattttcctttgtttatgtattgCTACACCATCTGGCCATTGAAaaccatacaatcaccaacaatctatcTCAATAAATCCTGAATCTTTTTatgtaaaaaggtcatttttaactcTTTA
>TCONS_00060239
TGGCAAAGACAAGGACAAAGGGAAAATAAGTAAATCTGCCCACTCAACAGAATGGACTGAGAATGATAAGAAAAGCAGCTCCGATGGTGGCAAAAAGCAAATAAAGAGAAATGAAAAAGGACAACTTCTTTTTAAAGACCACCCGGAGTTCACACCTAACATGACTCCCAAAGAGGTTTTACAGGCTGGCAGTTTTGGGGGCACCTATTTCAGGCCGATCTACTCCAGTATCACAAagaAACATTATAAAGATGTTTGGAAGGAGCTTCCCGAAGACTGGCTGGATGGACTAAACATCCCTGAGCAGGTGGCTTCATCCACATACCGGGAAAAAGTGAACACCTATAAAGTCAAATGTGGCGGCAGTTTGGAGATGTGGGAAAGCAGTGGCTGGATTGTGCCTCAGGATCCATACGGCTGGTTCCAATGGTACTGCAGtctgtaaactaaaCATCCCTGGGTttccaactttggtacag
>TCONS_00060240
TCAAGGCAAAACTGTTTATGTAGTTTGATTGTGTttaCGTGAAGTATTTTTCTAAGCAAAGGGCCATTGTGTCTGTACAACGCAGTTCTTGTTAAACCAGCCTGCTTCAGCGAACTTACAAAGTCATTCAACAATGAGCGACGAAGATGAGAGACACAGAAAGAAGATGAAAAGAAAAACCTGTACGGGTGATTCAAAGTCGCCCGCGAAgaagaaacagaaaataaaagacaaaagcgAGGAAAAGAGCCACGCAGTTCAGAAACACGacgCTATTGGTGGTAAAGCTGACTCTACAAAAACCAAAGTGAAGCTCTCTGGCAAAGACAAGGACAAAGGGAAAATAAGTAAATCTGCCCACTCAACAGAATGGACTGAGAATGATAAGAAAAGCAGCTCCGATGGTGGCAAAAAGCAAATAAAGAGAAATGAAAAAGGACAACTTCTTTTTAAAGACCACCCGGAGTTCACACCTAACATGACTCCCAAAGAGGTTTTACAGGCTGGCAGTTTTGGGGGCACCTATTTCAGGCCGATCTACTCCAGTATCACAAagaAACATTATAAAGATGTTTGGAAGGAGCTTCCCGAAGACTGGCTGGATGGACTAAACATCCCTGAGCAGGTGGCTTCATCCACATACCGGGAAAAAGTGAACACCTATAAAGTCAAATGTGGCGGCAGTTTGGAGATGTGGGAAAGCAGTGGCTGGATTGTGCCTCAGGATCCATACGGCTGGTTCCAATGGTACTGCAG

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-450 No description available

Ensembl:

ensembl_id ENSDARG00000035610

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00060238 False 1957 mRNA 0.40 6 22605530 22619879
TCONS_00060239 False 479 mRNA 0.45 5 22609150 22615087
TCONS_00060240 True 756 mRNA 0.44 6 22609826 22621417

Neighbor

gene id symbol gene type direction distance location
XLOC_031004 casp22 coding downstream 2551 22585269 ~ 22602979 (-)
XLOC_031003 aifm1 coding downstream 31857 22550614 ~ 22573673 (-)
XLOC_031002 glra4b coding downstream 61379 22515347 ~ 22544151 (-)
XLOC_031001 NA coding downstream 95466 22506445 ~ 22510064 (-)
XLOC_031000 sptbn4a coding downstream 103867 22465086 ~ 22501663 (-)
XLOC_031006 apool coding upstream 230440 22851857 ~ 22868650 (-)
XLOC_031007 si:ch211-26b3.4 coding upstream 250301 22871718 ~ 22952156 (-)
XLOC_031008 NA coding upstream 335478 22956895 ~ 22974641 (-)
XLOC_031009 uprt coding upstream 486387 23107804 ~ 23118290 (-)
XLOC_031010 si:dkey-114c15.5 coding upstream 555076 23176493 ~ 23179335 (-)
XLOC_030999 NA non-coding downstream 148241 22455566 ~ 22457289 (-)
XLOC_030998 NA non-coding downstream 149536 22453830 ~ 22455994 (-)
XLOC_030997 BX546499.2 non-coding downstream 166935 22435786 ~ 22438595 (-)
XLOC_030995 NA non-coding downstream 370372 22230690 ~ 22235158 (-)
XLOC_031012 BX640521.1 non-coding upstream 601284 23222701 ~ 23222819 (-)
XLOC_031015 CT025748.1 non-coding upstream 709736 23331153 ~ 23341623 (-)
XLOC_031017 NA non-coding upstream 824827 23446244 ~ 23456234 (-)
XLOC_031029 BX957257.2 non-coding upstream 1136516 23757933 ~ 23758587 (-)

Expression


Co-expression Network