XLOC_003101



Basic Information


Item Value
gene id XLOC_003101
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 96979 ~ 166824 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00008503
tgtacacacacacatacacagatatataagcacacactgacacacaggcacatgtgcacacacacacacacaccttgttGAAGTTTTCAGCAGTGGCCCTCATCTCCTTCCATGTCTTGTTGAGCAGCTGTATGCAGACGCAGAAGAACTTTTTCCAGGCGCGCTTGTGTGTGAAGAACATGGGGTGGAAGTCATTACAGCCTTCATTTGCTGCAGAGAccagaggagtgtgtgtgtgagggtccaaaagaatgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtccagtccGGAACACCATGGCTCTGTTGAGATACTCTGTTCCAGATGAAGCTGCAGTGTACAGGactgacacctagtggttgaactacAAATTCAAGTTCAGAGTTTTCCACCTCCTGATTCACAGACTGATGACAGCACAGGATTTGGCGCACCTGACCATACACTGCACACTACATTTGCACATTTccccccaacacacacacacac

Function


GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00008503 True 517 lncRNA 0.48 2 96979 166824

Neighbor


gene id symbol gene type direction distance location
XLOC_003100 CABZ01072242.1 coding upstream 18787 77526 ~ 78192 (+)
XLOC_003099 NA coding upstream 41253 54204 ~ 55726 (+)
XLOC_003103 mettl1 coding downstream 129613 296437 ~ 322247 (+)
XLOC_003104 NA coding downstream 131626 298450 ~ 299099 (+)
XLOC_003105 cyp27b1 coding downstream 162863 329687 ~ 339847 (+)
XLOC_003106 pdrg1 coding downstream 188481 355305 ~ 360317 (+)
XLOC_003107 CR855375.1 coding downstream 204498 371322 ~ 371440 (+)
XLOC_003250 BX324177.11 misc downstream 11178979 11345803 ~ 11346099 (+)
XLOC_003255 BX324177.14 misc downstream 11206062 11372886 ~ 11373182 (+)
XLOC_003257 BX324177.13 misc downstream 11219538 11386362 ~ 11386658 (+)
XLOC_003260 BX324177.2 misc downstream 11251209 11418033 ~ 11418323 (+)
XLOC_003262 BX324177.15 misc downstream 11262569 11429393 ~ 11429689 (+)
XLOC_003109 NA non-coding downstream 307556 474380 ~ 504829 (+)
XLOC_003110 NA non-coding downstream 323111 489935 ~ 494533 (+)
XLOC_003112 NA non-coding downstream 376524 543348 ~ 544194 (+)

Expression



Co-expression Network