XLOC_031013 (plp1b)


Basic Information

Item Value
gene id XLOC_031013
gene name plp1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 23268121 ~ 23280098 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00060255
CTGCGTTACGTGTGTGTGTCCTTGACTAACAGTAGGCCAACTAACTCTCCTAAGTGTGCACGCTCGTTCTTGGTGATTATGTTAGCATAaggagtgtgtgagtgtatagatgtgtgtgtgtatagtgtgtgctgcatgtgcagtgtgtgtgttgatctATTACTCACCTACAGGTTGCTATGACTGCTGCATCCGCTGCCTGGGCGCTGTGCCCTACACCAGCTTGGTGGCCACCCTGCTCTGCTACGCCGGCGTGGGGCTCTTCTGCGGGGCTGGCCATGAGgcactcactcatacacacaccTTTGTAGAGCTCCACTTCGCAAGGGACGTCCAGGACTTCACTGTCATGGCAGACTTTATAAAGTATTTCCAGTATGTGATCTACGGTCTGGCCTCCTTCTTCTTCCTCTATGGACTGCTGCTGCTGGCTGAAGGTTTTTACACCACCAGTGCAGTAAAGCAGACGTTCGGGGAGTTCAGGAGCACACAGTTCGGGCGCTGCATAAGTCTCACTTTTATAATCCTGACGTACGTGCTCGCTCTGATCTGGCTGATTGTGTTCGGCTTCACGGCTGTTCCTGTGCTCTTCTTCATTAATATGAAAAGCTCCTGTCACACTGTTAACGTCCTGTCAGAGACCACCTTGTTCAACCAGCAATCCAGGGTCTGCATGGATGCACGCATGTATGGATTTCTTTCCTGGAATGCCATGCCAGGGGTTGTTTGTGGAAATGCACTGGCCAACATATGCAAAGCACCAGAGTTCCACGTGACCTATGACCTTTACATCTGTGCTTTCGCTGGAGCAGGAATCACCCTTCTTGCCCTGTTCGTTTACATGGTCGCCACCACCTACAACTACGCTATTCTGCGGTTTCTAGGAAGGAAGGGAATCCGTTGCTAGGTTCAGTTTCTACGCCTGCTTTCCTGCTGCTGCGGTTTCAGTGTCTTCACTGCGGCCGGTGAGGAAACGCAAACGAGCTCCATGAAGCCCCTGCAGAGTTCTAGCTTACagagaacaaacacacacaaaccactGTATTCACAAACCAAAGGACCACaaactgaacacacacaaaaacactgatCAATAGATGCAAATAAATTTGTTAAAGCACAACACATAAAAGACTGTAGCGTAGATCTCTGGCGGAGTGGAATCTTGCTTCTGTATTTCTTCACTCGTTTCCTCTCGCTGTGTCTTTATTAGACCGCTCTCATggccatttattcattttaatgattGTATTCATTGTGCTTCTTGGTCATATTAATGCCTTGCAGTTTGCCAGGATTTTAGCTTTTCTCCACTCTCTTTCTTTTTtagacacacccacacacactacaCGTCTTTTTGAGAGAGTGTGATTGTTGTCAGATGTAGGTTTGCATTGTGTGAGACACAGAGAACTCATTATTTACAGACACTAATGTTGGTCCTCCTGTGTGTGATTGTAAGTTTGTGAGtggttttgttgtatattttgaCTAACTTTAGCAGTATGCTGAACCTGATCAATGATGGTGCTCGGTCAAAACAActaatcattttttattgttcTGACTCGTTTTAGACAACTAAAAGTTATTTCTAGAGTACTCTTGTGAATAACTGTATGTGATTAATACGAATGTAGAATTGAAACTAAAGTGAGTTTACATAAAATCTGTGTTGACTTCTTTGCAACTCATGCAATAaactttaatttcttttaatgAA
>TCONS_00060256
cTCACCCTGACACCAGGCTGCTCAGcatagagagagagggaaagaaggAGAGAAAGAAGCGAGGGAGGGAGAGGAGCAGCTTAAGCGATGCGTTTTTTTCTTCCTTGAGGTGGACACTGGAGTGTATCTGAAGAAAGAAAGCCAAATTACCTCCCTCAATTTGCACAGCAGCCTCTCTGGAGCGAACGAGCGTCTGCGTGGGTTCGACTCAGCAGTGTCAATGTTTCCAGTGAAACAGCCGTGGTTGTGTAAAGCTCTAGGTTGCTATGACTGCTGCATCCGCTGCCTGGGCGCTGTGCCCTACACCAGCTTGGTGGCCACCCTGCTCTGCTACGCCGGCGTGGGGCTCTTCTGCGGGGCTGGCCATGAGgcactcactcatacacacaccTTTGTAGAGCTCCACTTCGCAAGGGACGTCCAGGACTTCACTGTCATGGCAGACTTTATAAAGTATTTCCAGTATGTGATCTACGGTCTGGCCTCCTTCTTCTTCCTCTATGGACTGCTGCTGCTGGCTGAAGGTTTTTACACCACCAGTGCAGTAAAGCAGACGTTCGGGGAGTTCAGGAGCACACAGTTCGGGCGCTGCATAAGTCTCACTTTTATAATCCTGACGTACGTGCTCGCTCTGATCTGGCTGATTGTGTTCGGCTTCACGGCTGTTCCTGTGCTCTTCTTCATTAATATGAAAAGCTCCTGTCACACTGTTAACGTCCTGTCAGAGACCACCTTGTTCAACCAGCAATCCAGGGTCTGCATGGATGCACGCATGTATGGATTTCTTTCCTGGAATGCCATGCCAGGGGTTGTTTGTGGAAATGCACTGGCCAACATATGCAAAGCACCAGAGTTCCACGTGACCTATGACCTTTACATCTGTGCTTTCGCTGGAGCAGGAATCACCCTTCTTGCCCTGTTCGTTTACATGGTCGCCACCACCTACAACTACGCTATTCTGCGGTTTCTAGGAAGGAAGGGAATCCGTTGCTAGGTTCAGTTTCTACGCCTGCTTTCCTGCTGCTGCGGTTTCAGTGTCTTCACTGCGGCCGGTGAGGAAACGCAAACGAGCTCCATGAAGCCCCTGCAGAGTTCTAGCTTACagagaacaaacacacacaaaccactGTATTCACAAACCAAAGGACCACaaactgaacacacacaaaaacactgatCAATAGATGCAAATAAATTTGTTAAAGCACAACACATAAAAGACTGTAGCGTAGATCTCTGGCGGAGTGGAATCTTGCTTCTGTATTTCTTCACTCGTTTCCTCTCGCTGTGTCTTTATTAGACCGCTCTCATggccatttattcattttaatgattGTATTCATTGTGCTTCTTGGTCATATTAATGCCTTGCAGTTTGCCAGGATTTTAGCTTTTCTCCACTCTCTTTCTTTTTtagacacacccacacacactacaCGTCTTTTTGAGAGAGTGTGATTGTTGTCAGATGTAGGTTTGCATTGTGTGAGACACAGAGAACTCATTATTTACAGACACTAATGTTGGTCCTCCTGTGTGTGATTGTAAGTTTGTGAGtggttttgttgtatattttgaCTAACTTTAGCAGTATGCTGAACCTGATCAATGATGGTGCTCGGTCAAAACAActaatcattttttattgttcTGACTCGTTTTAGACAACTAAAAGTTATTTCTAGAGTACTCTTGTGAATAACTGTATGTGATTAATACGAATGTAGAATTGAAACTAAAGTGAGTTTACATAAAATCTGTGTTGACTTCTTTGCAACTCATGCAATAaactttaatttcttttaatgAA
>TCONS_00060258
GGGAGATTAAACTACACAGCACATCAGAGAGACTGAGCGCGatacgcacacacatactcacatgGGTTGCTATGACTGCTGCATCCGCTGCCTGGGCGCTGTGCCCTACACCAGCTTGGTGGCCACCCTGCTCTGCTACGCCGGCGTGGGGCTCTTCTGCGGGGCTGGCCATGAGgcactcactcatacacacaccTTTGTAGAGCTCCACTTCGCAAGGGACGTCCAGGACTTCACTGTCATGGCAGACTTTATAAAGTATTTCCAGTATGTGATCTACGGTCTGGCCTCCTTCTTCTTCCTCTATGGACTGCTGCTGCTGGCTGAAGGTTTTTACACCACCAGTGCAGTAAAGCAGACGTTCGGGGAGTTCAGGAGCACACAGTTCGGGCGCTGCATAAGTCTCACTTTTATAATCCTGACGTACGTGCTCGCTCTGATCTGGCTGATTGTGTTCGGCTTCACGGCTGTTCCTGTGCTCTTCTTCATTAATATGAAAAGCTCCTGTCACACTGTTAACGTCCTGTCAGAGACCACCTTGTTCAACCAGCAATCCAGGGTCTGCATGGATGCACGCATGTATGGATTTCTTTCCTGGAATGCCATGCCAGGGGTTGTTTGTGGAAATGCACTGGCCAACATATGCAAAGCACCAGAGTTCCACGTGACCTATGACCTTTACATCTGTGCTTTCGCTGGAGCAGGAATCACCCTTCTTGCCCTGTTCGTTTACATGGTCGCCACCACCTACAACTACGCTATTCTGCGGTTTCTAGGAAGGAAGGGAATCCGTTGCTAGGTTCAGTTTCTACGCCTGCTTTCCTGCTGCTGCGGTTTCAGTGTCTTCACTGCGGCCGGTGAGGAAACGCAAACGAGCTCCATGAAGCCCCTGCAGAGTTCTAGCTTACagagaacaaacacacacaaaccactGTATTCACAAACCAAAGGACCACaaactgaacacacacaaaaacactgatCAATAGATGCAAATAAATTTGTTAAAGCACAACACATAAAAGACTGTAGCGTAGATCTCTGGCGGAGTGGAATCTTGCTTCTGTATTTCTTCACTCGTTTCCTCTCGCTGTGTCTTTATTAGACCGCTCTCATggccatttattcattttaatgattGTATTCATTGTGCTTCTTGGTCATATTAATGCCTTGCAGTTTGCCAGGATTTTAGCTTTTCTCCACTCTCTTTCTTTTTtagacacacccacacacactacaCGTCTTTTTGAGAGAGTGTGATTGTTGTCAGATGTAGGTTTGCATTGTGTGAGACACAGAGAACTCATTATTTACAGACACTAATGTTGGTCCTCCTGTGTGTGATTGTAAGTTTGTGAGtggttttgttgtatattttgaCTAACTTTAGCAGTATGCTGAACCTGATCAATGATGGTGCTCGGTCAAAACAActaatcattttttattgttcTGACTCGTTTTAGACAACTAAAAGTTATTTCTAGAGTACTCTTGTGAATAACTGTATGTGATTAATACGAATGTAGAATTGAAACTAAAGTGAGTTTACATAAAATCTGTGTTGACTTCTTTGCAACTCATGCAATAaactttaatttcttttaatgAA
>TCONS_00060257
GGGAGATTAAACTACACAGCACATCAGAGAGACTGAGCGCGatacgcacacacatactcacatgGCTGCCTCCGCTGTTGATTGGCTAGGACAGTTGCCACAACGCCTCAGAGGTGTGGATGTGAAGAGCAGTAACCTCAGGAGACTCCGGCCAAAGGTCACACCAGGTTGCTATGACTGCTGCATCCGCTGCCTGGGCGCTGTGCCCTACACCAGCTTGGTGGCCACCCTGCTCTGCTACGCCGGCGTGGGGCTCTTCTGCGGGGCTGGCCATGAGgcactcactcatacacacaccTTTGTAGAGCTCCACTTCGCAAGGGACGTCCAGGACTTCACTGTCATGGCAGACTTTATAAAGTATTTCCAGTATGTGATCTACGGTCTGGCCTCCTTCTTCTTCCTCTATGGACTGCTGCTGCTGGCTGAAGGTTTTTACACCACCAGTGCAGTAAAGCAGACGTTCGGGGAGTTCAGGAGCACACAGTTCGGGCGCTGCATAAGTCTCACTTTTATAATCCTGACGTACGTGCTCGCTCTGATCTGGCTGATTGTGTTCGGCTTCACGGCTGTTCCTGTGCTCTTCTTCATTAATATGAAAAGCTCCTGTCACACTGTTAACGTCCTGTCAGAGACCACCTTGTTCAACCAGCAATCCAGGGTCTGCATGGATGCACGCATGTATGGATTTCTTTCCTGGAATGCCATGCCAGGGGTTGTTTGTGGAAATGCACTGGCCAACATATGCAAAGCACCAGAGTTCCACGTGACCTATGACCTTTACATCTGTGCTTTCGCTGGAGCAGGAATCACCCTTCTTGCCCTGTTCGTTTACATGGTCGCCACCACCTACAACTACGCTATTCTGCGGTTTCTAGGAAGGAAGGGAATCCGTTGCTAGGTTCAGTTTCTACGCCTGCTTTCCTGCTGCTGCGGTTTCAGTGTCTTCACTGCGGCCGGTGAGGAAACGCAAACGAGCTCCATGAAGCCCCTGCAGAGTTCTAGCTTACagagaacaaacacacacaaaccactGTATTCACAAACCAAAGGACCACaaactgaacacacacaaaaacactgatCAATAGATGCAAATAAATTTGTTAAAGCACAACACATAAAAGACTGTAGCGTAGATCTCTGGCGGAGTGGAATCTTGCTTCTGTATTTCTTCACTCGTTTCCTCTCGCTGTGTCTTTATTAGACCGCTCTCATggccatttattcattttaatgattGTATTCATTGTGCTTCTTGGTCATATTAATGCCTTGCAGTTTGCCAGGATTTTAGCTTTTCTCCACTCTCTTTCTTTTTtagacacacccacacacactacaCGTCTTTTTGAGAGAGTGTGATTGTTGTCAGATGTAGGTTTGCATTGTGTGAGACACAGAGAACTCATTATTTACAGACACTAATGTTGGTCCTCCTGTGTGTGATTGTAAGTTTGTGAGtggttttgttgtatattttgaCTAACTTTAGCAGTATGCTGAACCTGATCAATGATGGTGCTCGGTCAAAACAActaatcattttttattgttcTGACTCGTTTTAGACAACTAAAAGTTATTTCTAGAGTACTCTTGTGAATAACTGTATGTGATTAATACGAATGTAGAATTGAAACTAAAGTGAGTTTACATAAAATCTGTGTTGACTTCTTTGCAACTCATGCAATAaactttaatttcttttaatgAA

Function

symbol description
plp1b Predicted to be a structural constituent of myelin sheath. Predicted to be involved in axon development and central nervous system myelination. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in myelin sheath and plasma membrane. Is expressed in nervous system. Human ortholog(s) of this gene implicated in Pelizaeus-Merzbacher disease and hereditary spastic paraplegia 2. Orthologous to human PLP1 (proteolipid protein 1).

GO:

id name namespace
GO:0061564 axon development biological_process
GO:0022010 central nervous system myelination biological_process
GO:0031175 neuron projection development biological_process
GO:0005886 plasma membrane cellular_component
GO:0043209 myelin sheath cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0019911 structural constituent of myelin sheath molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030710-6 Predicted to be a structural constituent of myelin sheath. Predicted to be involved in axon development and central nervous system myelination. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in myelin sheath and plasma membrane. Is expressed in nervous system. Human ortholog(s) of this gene implicated in Pelizaeus-Merzbacher disease and hereditary spastic paraplegia 2. Orthologous to human PLP1 (proteolipid protein 1).

Ensembl:

ensembl_id ENSDARG00000011929

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00060255 False 1723 mRNA 0.45 6 23268121 23277385
TCONS_00060256 False 1810 mRNA 0.46 7 23268121 23277939
TCONS_00060258 False 1615 mRNA 0.45 7 23268121 23280098
TCONS_00060257 True 1717 mRNA 0.46 8 23268121 23280098

Neighbor

gene id symbol gene type direction distance location
XLOC_031012 BX640521.1 coding downstream 45302 23222701 ~ 23222819 (-)
XLOC_031011 iqcd coding downstream 67241 23196067 ~ 23200880 (-)
XLOC_031010 si:dkey-114c15.5 coding downstream 88786 23176493 ~ 23179335 (-)
XLOC_031009 uprt coding downstream 149831 23107804 ~ 23118290 (-)
XLOC_031008 NA coding downstream 293480 22956895 ~ 22974641 (-)
XLOC_031014 nlgn3b coding upstream 3792 23283890 ~ 23317477 (-)
XLOC_031015 CT025748.1 coding upstream 51055 23331153 ~ 23341623 (-)
XLOC_031016 gria3a coding upstream 73472 23353570 ~ 23429228 (-)
XLOC_031017 NA coding upstream 166146 23446244 ~ 23456234 (-)
XLOC_031018 si:dkeyp-20g2.1 coding upstream 177014 23457112 ~ 23485308 (-)
XLOC_031001 NA non-coding downstream 758057 22506445 ~ 22510064 (-)
XLOC_030999 NA non-coding downstream 810832 22455566 ~ 22457289 (-)
XLOC_030998 NA non-coding downstream 812127 22453830 ~ 22455994 (-)
XLOC_031029 BX957257.2 non-coding upstream 477835 23757933 ~ 23758587 (-)
XLOC_031030 BX957257.1 non-coding upstream 488279 23768377 ~ 23770557 (-)
XLOC_031041 NA non-coding upstream 796527 24076625 ~ 24086136 (-)

Expression


Co-expression Network