XLOC_003106 (pdrg1)


Basic Information

Item Value
gene id XLOC_003106
gene name pdrg1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 355305 ~ 360317 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006145
GCATAACACACGCACAGTTCAGCATGGACGAAAGCGCGCAGCGGGTACTGGAGCATCTGACTGAGGTAGAGGTTGCTGCAGAAGACATACTCACCGACAAACAACAGATTGTGGATCTGGATGTGCGGAGAAACAGAAACCGAGAAGCTCTCAGCGCGTTAAGAAACAACTCACCAAACGATAATGTAAAGGTGTGTTTTGGAAATATGTTCATCAAATTCCCTCAAGAAAGCACCAGATCAATGATCCTGAAAGACCAAGAGCAGCTTGATAAGGAAATAACAGACCTCCGCACACGACTGAAAGCGAAAGTGAACCGTCTCAATGAGCTACAAGGTAAACCTGAGCTTAGAGGATACAACCTTGCTCCTCTGAGCAGTGATGAAGTAAAGGCGATTAACAGCCTTCTGAAGAAGTGAAGTTGATGAAATGAGTTATTCAGACTGCTTTGAGCCTGGAAATGGGTTGATGTATTGAGCAGTGCACTGGAGCACTAAACCAGCGGTGACTTCACCCACTCCACACAAGATCTGTGTCCTTCTCTTTGGTTTATTCAGTGGTTTTTTCATGCATGGTGTTTGTCAAGTCTGGTCCATGTTCTGTGGGATGTGAGATCATTCACACTTGTGCTTCTTCCCTGTTTCATTTTGAACAGGTTAAAATCAATTGCTGTTTTGTTGAGTGCACATATGAGGATGTTTTGTTGGTCATAATTCAATGCATTTGTGTTTAAATAACTGGATtatactgtttaaaataaaattaactgttgAAGAGAGAAGCCAGAATAATGCACAGATTTCCTGCTGGGtattcttattcattcattttcttgtcggcttattccctttattaatccggggtcgccacagcggaatgaaccgccaacttatccagcaagtttttacacagcggatacccttccagctgcaacccatctctgggaaaagtattattattatattttttcttactTTCACAGATTCTGTTAATAAACTgcatcattttaatacatttttaaatatttcttttgaTCTATTATGTAGATGTGGtccttcaaaaaataaataaaggatctCCATGTCGCTCTGCTGGATATACtgtatatcaggggtgtccaaactcagtcctggagggctggtgtcctgtagagtttagctccaaccctaatcaaacacacctgaagcagctgatcaagctcttactagatatactagaaacttcctggcaggtgtgttgaggcaagttggagctaaactcagcaggacaccggccctcaggactgagtttggacactcctgctgtATATGGTTAACAGCATTTATCTCTGTATTTTCTGCAGGTCTTTGTTTAGCCAGCAGATGGCAGCTTTGCTTTGTGTTAGTTTTATGTTGCAGTAAGTACAGTTGAAGGCTGAATTGGCCTATTCATGTAGTTTAGTAAAactatatcatttgagcatcgatatcgcagtgtGTAAATCTGCAGTCGTCACATTGCAAgattagattgtttattaaagataaagattcattca
>TCONS_00006146
ATAACACACGCACAGTTCAGCATGGACGAAAGCGCGCAGCGGGTACTGGAGCATCTGACTGAGGTAGAGGTTGCTGCAGAAGACATACTCACCGACAAACAACAGATTGTGGATCTGGATGTGCGGAGAAACAGAAACCGAGAAGCTCTCAGCGCGTTAAGAAACAACTCACCAAACGGCGAGTACAGACTACAGAATACTGGTTTATAATGCATTAATGGCACATATGCTTGGTGTTGGATGCAGTGTCATGCGTATAAAACTTGTACTACGTATAAAGCACATATATAAGTACACGTATCTTCcaaagtaataaatatttcatttataatgtGTCAGTAATAGGGTTATTAAGCTTATAACCACACCTAATGTAACACCCCGGTATGTTTACTACaggtttattttttgtaatttacccTAGAATGTTTAATTAACTTGTTTTACTCATGATTTATCAGTTCAGTTCACTATGttgtcattttagtttttatgGCTTGAATTTTTGCACCTTTTTTTGTGAATATGGGTTTAAAAAATCATCCTATGGGTATCCAAAATCtaataatttactaatatttaatatgattgtattatatatgtaatattaGGGATATTCAAACAAAGAAAAGTAAGTTATCATGACTCCAACCACTGAAAACACacaacttttttatatttacaaagtttttttttttttggcacatttGGGCTCAGTCCCTTTagtcattaggggtcgccacagtggaatgaactaagttttccaactattccagcacatgctttacacagcggatacccttctagctgcaatccatcactgggaaacacccatacatactcattcacacactcatacactatggcca

Function

symbol description
pdrg1 Predicted to enable unfolded protein binding activity. Predicted to act upstream of or within protein folding. Predicted to be located in cytoplasm. Predicted to be part of prefoldin complex. Orthologous to human PDRG1 (p53 and DNA damage regulated 1).

GO:

id name namespace
GO:0006457 protein folding biological_process
GO:0016272 prefoldin complex cellular_component
GO:0051082 unfolded protein binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-276 Predicted to enable unfolded protein binding activity. Predicted to act upstream of or within protein folding. Predicted to be located in cytoplasm. Predicted to be part of prefoldin complex. Orthologous to human PDRG1 (p53 and DNA damage regulated 1).

Ensembl:

ensembl_id ENSDARG00000045017

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006145 False 1537 mRNA 0.41 5 355305 360317
TCONS_00006146 True 869 lncRNA 0.36 2 355307 356260

Neighbor

gene id symbol gene type direction distance location
XLOC_003105 cyp27b1 coding upstream 15458 329687 ~ 339847 (+)
XLOC_003103 mettl1 coding upstream 33058 296437 ~ 322247 (+)
XLOC_003104 NA coding upstream 56206 298450 ~ 299099 (+)
XLOC_003101 NA coding upstream 188481 96979 ~ 166824 (+)
XLOC_003102 NCKAP1L coding upstream 195977 141504 ~ 159328 (+)
XLOC_003107 CR855375.1 coding downstream 11005 371322 ~ 371440 (+)
XLOC_003108 rab43 coding downstream 79988 440305 ~ 450099 (+)
XLOC_003109 NA coding downstream 114063 474380 ~ 504829 (+)
XLOC_003110 NA coding downstream 129618 489935 ~ 494533 (+)
XLOC_003111 raf1b coding downstream 146148 506465 ~ 540252 (+)
XLOC_003250 BX324177.11 misc downstream 10985486 11345803 ~ 11346099 (+)
XLOC_003255 BX324177.14 misc downstream 11012569 11372886 ~ 11373182 (+)
XLOC_003257 BX324177.13 misc downstream 11026045 11386362 ~ 11386658 (+)
XLOC_003260 BX324177.2 misc downstream 11057716 11418033 ~ 11418323 (+)
XLOC_003262 BX324177.15 misc downstream 11069076 11429393 ~ 11429689 (+)
XLOC_003099 NA non-coding upstream 299579 54204 ~ 55726 (+)
XLOC_003112 NA non-coding downstream 183031 543348 ~ 544194 (+)
XLOC_003118 FQ311892.1 non-coding downstream 370490 730807 ~ 730923 (+)

Expression


Co-expression Network