XLOC_031265 (si:ch211-284e13.12)


Basic Information

Item Value
gene id XLOC_031265
gene name si:ch211-284e13.12
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 38167810 ~ 38170996 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00060714
tataccATTGTATTATCTGCTTAAGCAGGAATTTTGTCAAAGACGTTTTGTTTCTCGTTGCGTGAAGGGGAGATCTGTGAGTCTTCGGTTTGTCCATCAGTGGAAGTAGTACAGCAGTATTTATGCCATGAGCACTCCAAAGtGTCCCAGCTGTCAGGGGTCTGATTGTGCAATGGATGGTCAGCGAGCGGTCTGCAGGTCTTGCAGTAAAAGTAATCGGCGTGTATTTCAGTTCTGTGTGGCCTGTCAAAGAGAATGGCCACGAAATGATTCAGACAAATACGCCTGCATGCTGCCAGACTGTGCTCTCCGTGCCGCCCTCCTCAGCGACAAAAAAATCAGTGACTCACTCAGCTCAGTGCGCGGATGCCCATTTTTCAGGGCCTGTCCAGGATGCAAGGCCCTGCTAACTCACAGTGGGTTAGGCTGTCCCAACATCATCTGCCCTCACTGTAATACAAGGTTTTGCTTTCGCTGTCTCCTTATAAGGCGATTTGGGATGAGTAATATTGAAGACCGTGGTCTTCTTACTCGTCAACTGTTTTTAATTCATGAGCATGACATGACTCCATGTAGAGTGGTAGACAACAAGTTGAGTCTTGTATTgttaggaaagaaagaaaaaaaaagttatgaagATTAGGTCCGCACAATATATGGAAAAAAAGATTGACATTAGTATAATTTTGCggggttaatatatatatatatatatatatatatatatatatatatatatatatatatatatataaaacataatagcCAATTTAATAGCTCTGTTtggaaaaaattttttttctaatgattgtggggattctgtaggggagtgtaTTGGCTTTAAATATATAAGTACAATGAACAGAACTaggatacaaattaaataaacagtgcttattTTTTCTTGGAAATGGTAGTCAGGTACAAATATTACATGATCCAGTgtaaaaataatactgcatagtcctcacttgatagaaaaaaaattataataatcattaataaagctTTAAACAGTTTTGTTTATTGTGCATGGATTCTGCTTTATTCTATTTT

Function

symbol description
si:ch211-284e13.12 Predicted to enable ubiquitin conjugating enzyme binding activity and ubiquitin protein ligase activity. Predicted to be involved in several processes, including autophagy of mitochondrion; cellular protein metabolic process; and regulation of cellular protein metabolic process. Predicted to act upstream of or within protein ubiquitination. Predicted to be part of ubiquitin ligase complex. Predicted to be active in Golgi apparatus; cytosol; and endoplasmic reticulum.

GO:

id name namespace
GO:0042981 regulation of apoptotic process biological_process
GO:0000422 autophagy of mitochondrion biological_process
GO:0032436 positive regulation of proteasomal ubiquitin-dependent protein catabolic process biological_process
GO:0016567 protein ubiquitination biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0000209 protein polyubiquitination biological_process
GO:0010821 regulation of mitochondrion organization biological_process
GO:1900407 regulation of cellular response to oxidative stress biological_process
GO:0001933 negative regulation of protein phosphorylation biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0005829 cytosol cellular_component
GO:0000151 ubiquitin ligase complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0031624 ubiquitin conjugating enzyme binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060526-158 Predicted to enable ubiquitin conjugating enzyme binding activity and ubiquitin protein ligase activity. Predicted to be involved in several processes, including autophagy of mitochondrion; cellular protein metabolic process; and regulation of cellular protein metabolic process. Predicted to act upstream of or within protein ubiquitination. Predicted to be part of ubiquitin ligase complex. Predicted to be active in Golgi apparatus; cytosol; and endoplasmic reticulum.

Ensembl:

ensembl_id ENSDARG00000094492

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00060714 True 1056 mRNA 0.37 3 38167810 38170996

Neighbor

gene id symbol gene type direction distance location
XLOC_031264 gucy2d coding downstream 6777 38123633 ~ 38161033 (-)
XLOC_031263 si:ch211-284e13.6 coding downstream 45684 38110384 ~ 38122126 (-)
XLOC_031262 si:ch211-284e13.14 coding downstream 60069 38104901 ~ 38107741 (-)
XLOC_031261 si:ch211-284e13.4 coding downstream 73680 38088594 ~ 38094130 (-)
XLOC_031260 si:dkey-111e8.5 coding downstream 103745 38060959 ~ 38064065 (-)
XLOC_031266 si:ch211-284e13.11 coding upstream 5044 38176040 ~ 38179220 (-)
XLOC_031267 si:ch211-284e13.9 coding upstream 22457 38193453 ~ 38197080 (-)
XLOC_031268 slc12a9 coding upstream 44928 38215924 ~ 38248462 (-)
XLOC_031269 NA coding upstream 79048 38250044 ~ 38255744 (-)
XLOC_031270 mink1 coding upstream 130910 38301906 ~ 38384755 (-)
XLOC_031259 BX640520.1 non-coding downstream 129593 38035337 ~ 38038217 (-)
XLOC_031251 NA non-coding downstream 455960 37708702 ~ 37711850 (-)
XLOC_031250 NA non-coding downstream 564075 37592276 ~ 37603735 (-)
XLOC_031249 NA non-coding downstream 684790 37480447 ~ 37483020 (-)
XLOC_031247 NA non-coding downstream 895499 37266944 ~ 37272311 (-)
XLOC_031276 NA non-coding upstream 443872 38614868 ~ 38633719 (-)
XLOC_031277 NA non-coding upstream 449961 38620957 ~ 38622971 (-)
XLOC_031280 BX640512.1 non-coding upstream 526500 38697496 ~ 38705831 (-)
XLOC_031284 NA non-coding upstream 619736 38790732 ~ 38791845 (-)

Expression


Co-expression Network