XLOC_031269


Basic Information

Item Value
gene id XLOC_031269
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 38250044 ~ 38255744 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00062050
atcatttaataccaataaatgatcattttaaatCAGCCACATTTGCCTTTTATAACCATAACTGTGTTTTGTCCCCCTAAAAAAACTTATTTGCAACTTATACGTAAAAACTACAAAGCCCACATGATATGCTGACGTCATCATTGCTCGACATCGTCGGTGACGGCAGCAGAATGCGACAGCTTGGtcaagatttacaaacattttaagggGGTCTGTGTTTTCAACACAGCAAACAGACAGTGTAACGAAGTGCTGATAATGGATGTGAGGATGTTAACTATTCAGCTCTAGTCAGCCAAGACAGAAACCAAACGCGCCTTCAGAGCTCTGCAATCCCGTATGTAACGTTACATCGCTCAGTGTGTAGGAGCGTGCCGTGGATCGTAGCCATGACTTTGAGCATGGACATCAGCGTTTCCTTTCTCAAGTGCGAACTCGCCTCTACTATTGATCAAGCCGTAAGATGCGCCGTTGAAACTGTTTTAAGAGAAACGGCGCGTGTTGTCGGAGTAAAGCTGGCCGCGGCTCGTAATGCAGCCGCAGAGTCGCACCGGGAGAACCAGAGCCTGCGGGAGAGGCTGGAGATCTCCGAGAGCGAGCTCAAAGCGGTCCGCTACTACATGACCGCGGCCGAGAAGAACATCAAACAGTGTTTACTCCTCAACAGAAACCAGCCCGGGGCAAACAGCGCGCGGTCGAGCGCAGAGGACGCAGTGTTCGTGTTTCCCTCACGCCTCGCGGACGAAAGCCCCACAGCACCCGCACAGAGCAGAGATTCTTCCCGCAAGACTTTTCGCAGCTCACCGGGAAGAATCCACAATCTCAAAAATGTTCCCAGTGTGGGCCTGTGTCTGCCCACGGTGCAGTCAGTCTGGCCTCGTGATTGTGTGAACCGCAGGAAAGCACGAGGCTCTTCAGTAGGGAACAGTTCAGCCCTCTCGAGTGACTCTACCAGCACACAAGTTCTGCTGGACAACACTGCTGCCCTCTTCAAACCGCAAGAGGACACAGAGGGCCCGTTTTACATCACCAACGAGGGCGGAAAAGgttcattgttattattgttttcatttgtaaGCAGGATAATGAGTTGCATGACCATCAATTATGGCcatgcaatttatttttaatttatttatatcaatgaaaataaatattggcTGGtggcaattattttatttaaaaaaaggtcatggccaataaaagaaaacaaaacagttatATTCAGGACCAACCACTGAAAAATGTTCAACTTAACATGCAACAGTCCtcacattaatattatttatatttattaatattattattatatttttatgacaAACTATATTCTGTACAAGTGTAAGTTTGTTTTAGGATATACTAAACTTTGGATTATGCAGCAGACTATATTCAACTGCCTCAGGGCCAGACAGAACCTGTggatattttttgctttttctgagcAGAATTTTGttcaaaaaatctgcagatttatgctgaaGGATTTTTGGagcattataaataaaaccttaatttatgaaaagaaactttttttacttgtatttaatgtgtacaatgcaaatccaattagatccatttggtaaacaaagtaagtctctcgtataatatatccactaaaatacaaaaaaaaattactttacaaactatattgtgaataatcatacaaatattttcatattagttaataatattactgaaataaaagaaaaaaactgaataactataaatttacacacatttaaacaagtaaataaacagaatcaataatAGACTAAAAATCtggaaatctgcagaattctgcacactcagattccatgtgggcctactcataagtcatctgtaaaaaaaataaaataaaaaaatagccctACAAATATCAGTTCTCAATACATCAGTGCATTTCTAAATGCGGTTAAATAATGTTTGagatatgtaaaaataaacatttctttaaaccCTTTTGTAATTCAAATATTCTGGCTTCAGTCCAGTAATTGTATGTCTTCAGATATCAGCAACCATATAACTGTATGTACAACAATGTAACTCCTATGATTAATTTCTAAATCTATTAAACCATAGGTCTAAAActctattcctggagggccacagctctgcgcatatttgctccaaccctaatcaaacatagctgatccaactaatcaaggagTTCAAGACTACTGTATACTATAAAGCTGCGgtcggtcacactagagtttgagcatgtgaaattttGTAGTacagcactgcgaaaaggggcgggaataaacgatgattagacattaaaaaagtgagcgattggtccgtattttaaatttctgtgcagagaggtcatgttttgattttataGTGGGCTCACGCAAtcatcatgtgatgcgatttcgcaggtcagagttcaccaatctTGAATTTTGCAACGCAGCGAACCACAAAACTAGCCGCATGagcttgtgtttccggtctgatgcattcatgtgcatatgaatgaaagtttatggggagaaaagtggttggagctaaactatgtagagttgcggccctccaggaattaagtttgggACCACTGCATTAAACCATTCAGAGCAAAAAGGCACATATCAAAACCTGAAGATGAATAGAATATGTTTAGAATAATGTTGGAGGCTTTTTACTTTCTAAAATGTATCAATTATGGATTAAAGAAGGCATTTTACAGATCGTGTTACTTTTTTTCATCTAATTTAGCAACATAATTTAAAGTATGTATGAAGTATGATGATATAAGTAGCTTTTATAAAGTTAAGACCATGTCAGATTTGATGgtctaaatcaggggttcccaaacttatCAGCCCAAgacccccataatgacaatgccagtgactcgcgacccccaatatcctctaaggtggttataaatacagaaaccttgcatgcaacgGTGCACATTCCAATAGACCCAattctattcttcatttatttttattaatgcatgCGAGTGCTGTAAACGGGCCAGAAAgattaacctggtgttataaaatccgTCTGCTggatctgacgctattgctgtgtctttaatattatgtaattaccccaggggtcgcaattttaatagaactagtaactataagctactatagtaactgtaTAGTATATATAACTATGAACGACAATATTTTTCTcgtcagtaggttatggataaaatatggtaattctaatggtttattaaaaataaatagatttttggaaatcaccaggcgacctggagctaaaatctgcaggacaacgaccctccagggccgagtttggacgCCCCTGGTCTAAATCGATTgcctcaaacttgattcctggagggcctcaGCTCTGCAGTTTCACGCCAAGCCTAATCAACCACAGCtcatccaactaatcaaggtgttcaagactactatggACTGTTAgtcaggtgtgagttggaggagattggagctaaactacgcagagctgcagccctccaggaaatgAGTTTGAGTCCCTTGGTCTAAATCAAGTGTGCATCAATATTTTCAtcctttttgttttgtgttcagaccACAGTTCTGCAGTACCAGACACAGAGAGAGCACATGAAGATCCAGAATCTCCAGGCCCCTCCACAAACCCAGCAGAGGACCCGTCGGACATGTCAAAGTTTGAGTTTGAAATGAGCACGCCAGCTGGCAATGTAAATGAGCTGGAGCTCATACAGGTGATGGAAGACGCTGATGTAAAACAAGGCACCATTAAAATCGAAGACGATCCTGATTCACTTACATTAGAGCCTCCTTCATCCAATCTAGCTTTAGCATCTTCAGCCAACTCCATTCAAGAGATACCGCAGATCTCCTCTCCTCCAGTGCCTGAGAGTGATGGAGATGCTTTGCTGGCCTTGGCTCCAACTGCGGGCAGTGACTCTGGTTTCAGCAGAACTGTCGAGAGCCCTGATAAAGTGCATCGCTGCAACATTTGTGGGAGAGGGTTCAGACGTTTCTACTGCCTGAAAacacaccagcgcatacacacagGGGAGCGTCCATACCCGTGCAGATACTGTGAGAAGCGTTTCCGCCATCTGGACAGCTTACACAAGCACCAGCGCATTCACACGGGAGAGAGACCGTACCGCTGCGCTGAGTGTGGATGCTGCTTCAGAGAACTCGGACAACTCAAAAAACACAGACTCAAACACTCGCCCACATTCGTTCCTGTGGCCAATCCCACCTTCCCGCTCCTCCCAGCCGGGCCCTCCTATGTGTGGCCACATCTCAACACACAGTCTTTGGATTCAGTCTAGGCTTTACATGTTTAAAACAGTAATTCTGGACACTTTGTGTATGATGTTATGACAGCATTgaattactttattaatttactgttttaaaaGAAAAGCAGACACATTCAGTTGGataattcaccctaaaatgaaaattgtcatcatgtACTCACTTTCCATATATTCAATGCTtttcgagttttttttttttttttttttttgctgtgggtGTCAATGGCTGccattttccaacattcttcaaaatatcttctttttttgtccAGTAGGAAAACGAAACTTAAGATTTAGaaccacctgagggtgagtacatttgtatttttgggtGTCAGCTGTCACTAATGGCAAGTTTAATCTCTTTTCAAATAACAAATAGAACCTTAAATGTGTAAGTACAATAAAAGTGTGTCAAGTAAACATTCATTTGCAAAAGAAATACTTCATTTAAAGAAATACTacacttttattttcaaaattggCTCAATTTGCGTGTTTCTTACAGTTAAACAGTCGtgggttttaccatttttgaattcatttagccaatctctgggtctaaGGGAGAACTTTAAGCTtaacttagcataaatcattgaatcgaattagaccgttaacattttgctaaacatttttttttaaagtgtttacatattttttctgttttaaagctCTATTGTGTAGTCACATCATGTACTAAGTTGCTATATTTTAGGCTGATGTGGCTAGTAACTTAACGCTTATTCCAATACCATTGCTCCTGCTGCAGCCTTTGTTACACCAATGAACTTTGTTGATTATTTTATGGAGTGAGTGTACAGTTATTAGCCATATGGGCCtataaaaaacaacttttcattttctgccaGACTTACTACACAATGCAAGTATTAAAGAATCAAGCTTTTAAAAAGGAGAACATATTAAAACTGTAATGCTACGGTCCAATTCCAGTCAATGATTtacgctaagctaaaagtactcgcATCATACCACAGATCAGTTAAATAGATTTGAAAATGGTAAAGCTCAACAGTTTAACTCAAGGGAAATTTTGAATTAAAGTGCTCTTATAAAAATCAATTTAAGGTAATTGAGTGTTTCTATAAATATTCTGTCTTGACTGGAATCGTTTAATTTGTAATATAAAACCCTGATTAAAAATGAGTCattggatttatatatatatatatatatatatatatatatatatatatatatatatatatatatatttttttttttttttttttatcttaaaatcagGGAGATTTATGTCCTTTCATTAATCAGTCTCTTTACCTAAATCTGaatattcaaaatgttttaaagagaTTCAAAAATAAACCAAGTTTCTTTTTAATCC
>TCONS_00060719
tatattgaataaaaagcctttattaccaattttttcataattttatcatttaataccaataaatgatcattttaaatCAGCCACATTTGCCTTTTATAACCATAACTGTGTTTTGTCCCCCTAAAAAAACTTATTTGCAACTTATACGTAAAAACTACAAAGCCCACATGATATGCTGACGTCATCATTGCTCGACATCGTCGGTGACGGCAGCAGAATGCGACAGCTTGGtcaagatttacaaacattttaagggGGTCTGTGTTTTCAACACAGCAAACAGACAGTGTAACGAAGTGCTGATAATGGATGTGAGGATGTTAACTATTCAGCTCTAGTCAGCCAAGACAGAAACCAAACGCGCCTTCAGAGCTCTGCAATCCCGTATGTAACGTTACATCGCTCAGTGTGTAGGAGCGTGCCGTGGATCGTAGCCATGACTTTGAGCATGGACATCAGCGTTTCCTTTCTCAAGTGCGAACTCGCCTCTACTATTGATCAAGCCGTAAGATGCGCCGTTGAAACTGTTTTAAGAGAAACGGCGCGTGTTGTCGGAGTAAAGCTGGCCGCGGCTCGTAATGCAGCCGCAGAGTCGCACCGGGAGAACCAGAGCCTGCGGGAGAGGCTGGAGATCTCCGAGAGCGAGCTCAAAGCGGTCCGCTACTACATGACCGCGGCCGAGAAGAACATCAAACAGTGTTTACTCCTCAACAGAAACCAGCCCGGGGCAAACAGCGCGCGGTCGAGCGCAGAGGACGCAGTGTTCGTGTTTCCCTCACGCCTCGCGGACGAAAGCCCCACAGCACCCGCACAGAGCAGAGATTCTTCCCGCAAGACTTTTCGCAGCTCACCGGGAAGAATCCACAATCTCAAAAATGTTCCCAGTGTGGGCCTGTGTCTGCCCACGGTGCAGTCAGTCTGGCCTCGTGATTGTGTGAACCGCAGGAAAGCACGAGGCTCTTCAGTAGGGAACAGTTCAGCCCTCTCGAGTGACTCTACCAGCACACAAGTTCTGCTGGACAACACTGCTGCCCTCTTCAAACCGCAAGAGGACACAGAGGGCCCGTTTTACATCACCAACGAGGGCGGAAAAGaccACAGTTCTGCAGTACCAGACACAGAGAGAGCACATGAAGATCCAGAATCTCCAGGCCCCTCCACAAACCCAGCAGAGGACCCGTCGGACATGTCAAAGTTTGAGTTTGAAATGAGCACGCCAGCTGGCAATGTAAATGAGCTGGAGCTCATACAGGTGATGGAAGACGCTGATGTAAAACAAGGCACCATTAAAATCGAAGACGATCCTGATTCACTTACATTAGAGCCTCCTTCATCCAATCTAGCTTTAGCATCTTCAGCCAACTCCATTCAAGAGATACCGCAGATCTCCTCTCCTCCAGTGCCTGAGAGTGATGGAGATGCTTTGCTGGCCTTGGCTCCAACTGCGGGCAGTGACTCTGGTTTCAGCAGAACTGTCGAGAGCCCTGATAAAGTGCATCGCTGCAACATTTGTGGGAGAGGGTTCAGACGTTTCTACTGCCTGAAAacacaccagcgcatacacacagGGGAGCGTCCATACCCGTGCAGATACTGTGAGAAGCGTTTCCGCCATCTGGACAGCTTACACAAGCACCAGCGCATTCACACGGGAGAGAGACCGTACCGCTGCGCTGAGTGTGGATGCTGCTTCAGAGAACTCGGACAACTCAAAAAACACAGACTCAAACACTCGCCCACATTCGTTCCTGTGGCCAATCCCACCTTCCCGCTCCTCCCAGCCGGGCCCTCCTATGTGTGGCCACATCTCAACACACAGTCTTTGGATTCAGTCTAGGCTTTACATGTTTAAAACAGTAATTCTGGACACTTTGTGTATGATGTTATGACAGCATTgaattactttattaatttactgttttaaaaGAAAAGCAGACACATTCAGTTGGataattcaccctaaaatgaaaattgtcatcatgtACTCACTTTCCATATATTCAATGCTtttcgagttttttttttttttttttttttgctgtgggtGTCAATGGCTGccattttccaacattcttcaaaatatcttctttttttgtccAGTAGGAAAACGAAACTTAAGATTTAGaaccacctgagggtgagtacatttgtatttttgggtGTCAGCTGTCACTAATGGCAAGTTTAATCTCTTTTCAAATAACAAATAGAACCTTAAATGTGTAAGTACAATAAAAGTGTGTCAAGTAAACATTCATTTGCAAAAGAAATACTTCATTTAAAGAAATACTacacttttattttcaaaattggCTCAATTTGCGTGTTTCTTACAGTTAAACAGTCGtgggttttaccatttttgaattcatttagccaatctctgggtctaaGGGAGAACTTTAAGCTtaacttagcataaatcattgaatcgaattagaccgttaacattttgctaaacatttttttttaaagtgtttacatattttttctgttttaaagctCTATTGTGTAGTCACATCATGTACTAAGTTGCTATATTTTAGGCTGATGTGGCTAGTAACTTAACGCTTATTCCAATACCATTGCTCCTGCTGCAGCCTTTGTTACACCAATGAACTTTGTTGATTATTTTATGGAGTGAGTGTACAGTTATTAGCCATATGGGCCtataaaaaacaacttttcattttctgccaGACTTACTACACAATGCAAGTATTAAAGAATCAAGCTTTTAAAAAGGAGAACATATTAAAACTGTAATGCTACGGTCCAATTCCAGTCAATGATTtacgctaagctaaaagtactcgcATCATACCACAGATCAGTTAAATAGATTTGAAAATGGTAAAGCTCAACAGTTTAACTCAAGGGAAATTTTGAATTAAAGTGCTCTTATAAAAATCAATTTAAGGTAATTGAGTGTTTCTATAAATATTCTGTCTTGACTGGAATCGTTTAATTTGTAATATAAAACCCTGATTAAAAATGAGTCattggatttatatatatatatatatatatatatatatatatatatatatatatatatatatatatttttttttttttttttttatcttaaaatcagGGAGATTTATGTCCTTTCATTAATCAGTCTCTTTACCTAAATCTGaatattcaaaatgttttaaagagaTTCAAAAATAAACCAAGTTTCTTTTTAATCC

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0071546 pi-body cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0043169 cation binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00062050 False 5657 lncRNA 0.38 1 38250044 38255700
TCONS_00060719 True 3197 lncRNA 0.41 2 38250044 38255744

Neighbor

gene id symbol gene type direction distance location
XLOC_031268 slc12a9 coding downstream 1582 38215924 ~ 38248462 (-)
XLOC_031267 si:ch211-284e13.9 coding downstream 52964 38193453 ~ 38197080 (-)
XLOC_031266 si:ch211-284e13.11 coding downstream 70824 38176040 ~ 38179220 (-)
XLOC_031265 si:ch211-284e13.12 coding downstream 79048 38167810 ~ 38170996 (-)
XLOC_031264 gucy2d coding downstream 89011 38123633 ~ 38161033 (-)
XLOC_031270 mink1 coding upstream 46162 38301906 ~ 38384755 (-)
XLOC_031271 pld2 coding upstream 132699 38388443 ~ 38438613 (-)
XLOC_031272 chrne coding upstream 184355 38440099 ~ 38451082 (-)
XLOC_031273 atp1b2b coding upstream 219787 38475531 ~ 38506981 (-)
XLOC_031274 CR854980.1 coding upstream 261742 38517486 ~ 38533861 (-)
XLOC_031259 BX640520.1 non-coding downstream 211827 38035337 ~ 38038217 (-)
XLOC_031251 NA non-coding downstream 538194 37708702 ~ 37711850 (-)
XLOC_031250 NA non-coding downstream 646309 37592276 ~ 37603735 (-)
XLOC_031249 NA non-coding downstream 767024 37480447 ~ 37483020 (-)
XLOC_031247 NA non-coding downstream 977733 37266944 ~ 37272311 (-)
XLOC_031276 NA non-coding upstream 359124 38614868 ~ 38633719 (-)
XLOC_031277 NA non-coding upstream 365213 38620957 ~ 38622971 (-)
XLOC_031280 BX640512.1 non-coding upstream 441752 38697496 ~ 38705831 (-)
XLOC_031284 NA non-coding upstream 534988 38790732 ~ 38791845 (-)
XLOC_031285 BX640512.5 non-coding upstream 542460 38798204 ~ 38798318 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000039_08189467_08193070 NA coding CI01000039 null 8189282 ~ 8193070 (-)