XLOC_031273 (atp1b2b)


Basic Information

Item Value
gene id XLOC_031273
gene name atp1b2b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 38475531 ~ 38506981 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00060728
tctctctctctctctctctccctctctctctgcgGAATGCGCACTGCACTGGCGGGTGAGCAGAGATTCGGGCGTTACAGTGGGATCGAGATCTTCTCTCACTCAGTCCTCGCTTGACTGCTCAGGTTTAGGCAGAGTGCCTTCGGAATCAATCTTAAGCagtctttcatttaaaaaaactttctGTAGAGCCACAAAAGATCGTTTAACCCTTTCCACACAGTATTTAAGGCTTGAATAGCTCTTTATTACTCTCAAAGAGAGTGCTAGCCCCGAGGAGTTGTCTCTGTGAGCGCACATTTAGTCCAGGAAAATGGCCAAGGATGACAAGAACGGCTGGAAGGAGTTCTTCTGGAACCCGAGGACCCGCGAGTTCTGCGGGAGGACCGCGAGCAGTTGGGgtctGATTCTGCTGTTTTATCTGGCATTCTACATATTCCTGGCTGGATTGTTTACTCTCACCATGTACGTAATGCTGCAGACCCTCGATGACCACAGACCAACATACCAGGACAGACTTTCAActccagGGATGATGATCAGACCTAAAGGAGAGCAGCTGGAGATTGCTTATACCACCGAGTACACAGAGACCTGGGAAAGATACGTGCAGGCTCTCAATAACTTCCTCTCACCCTACAACGACACAGTCCAGACACAGAAGAACTATGAGTGTAAACCGGATCAGTTTTTCATCCAGGAGGACAGCGGCGGTTTGAAGAACTTTCCCAAACGTTCCTGCCAGTTCAAGCGCTCTATACTGGAGAAATGCTCAGGGATCACGGATCGCTTCTATGGTTACGATGAAGGCAAACCCTGCATCATCATCAAGCTCAACCGTgTGATCGGTCTGTTGCCTGCTAAGGACGGTCAGCCTCCTTATGTCACGTGTGGTGCGAAGAAATACAAAGTTGGGAAAGATGAGTGGACTGATGATTCAGATAAACTTGGTGAACTGGCATACTATCCCCCTAATGGCACCTTCAACCTCATGTACTATCCATACTATGGCAAGAAAGCGCAGGTGAACTACTCTCAGCCTCTAGTGGCCGTTAAGTTCCTCAACATCACCAGGAATGAGGACGTCAATGTGGAGTGCAAAATCAACTCCAACAACATTCCCGAAGGCAGTGAACGAGACAAGTTTGCTGGACGAGTTTCCTTCACACTGAGGATCAACTCCAGAGATTGAACAGACaagagtgtttgtttgtttttttgcacgcacacacatacatatgcacacaccgGTCCTCCCATCTAATAGTTTACAACAACGTGTGGAAGGAACAGCTAGTAGTCCGACAGAACAAAGAATAATAGTACTCTTTTAGACTTTGAGACTAGTAAGGTTGCAAATAGTAAGCAGGATTTTTTGTGCatattaaatcagtgtgtgtgtgtgtgtgcgtgtgagttcagagtacagtatttattttttgaaccaAAATTTGAATTGCATGCTCAGCTAGCAGAGctggtgattaaaaaaataatatactatTCTGGTCAAGCAACCTTACCtagtatcttttaaaaaatacctTTTTCTTTACTAAGTATCTGTTCATTTTGTTCAATTTTTAATTTCGGAGCAGGCGTCAATGAGGTAATGTGCTTGGCTGGCATAATCTCATGTGTGTTTGGAGAATCTCTAGAGTTCTGGGACTGTTTGGCACTTGTGTCTCAGTCTGATTTGTGAGGAGGATAGTTTAGTTTGCACCGACATAAAGGTAACACTGCGCATGTCAGCTCTAGCAAACACCAAAACAACACAGCTTgacacattcacaaacatttcTGCATTCCTCACAGTTTGGCTCAGACTGAACTCTGAAGTGTGTCACGTTTCATTTCTCATGAGGCGTTTTTTGTTTAAGtttgtttatatgtataaatagGTATTTTGCAGTATTTCCTTTCTTTGGTTTcaccttttttcttttatttgcatgtgttacCCAGTTTGTCTCACATGGTGATGGGATGTAAGGTTTTGTATTGATCTGGACCAACAGAAAGGATTACAGCAGGTCTGGGTTCAGTTTGAAATCTGAATGATACAGTAGGTAGAAgaagtgtggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgcgtgagaAAGAGATTACATTTGGATTCctgcatgtgcatgtgtgattTTTTTGATTTCATCTCATTTGTGTTAAACTTTGTGCACAATTTACTTTCTGAGTATTTTTGACTTTTGTTGTAAGTGACTTTGAGCATAAGCATAGAGACAGATCAGATAGAGTGACTAGGAGCAGGGACAGCAGATTTATGTTTCGAAGTGAATCCATCCCTGCATGAgtcaataaaaccaaaaaacaTGGTCACCAA
>TCONS_00060729
CGGCTGGAAGGAGTTCTTCTGGAACCCGAGGACCCGCGAGTTCTGCGGGAGGACCGCGAGCAGTTGGGgtctGATTCTGCTGTTTTATCTGGCATTCTACATATTCCTGGCTGGATTGTTTACTCTCACCATGTACGTAATGCTGCAGACCCTCGATGACCACAGACCAACATACCAGGACAGACTTTCAActccagGGATGATGATCAGACCTAAAGGAGAGCAGCTGGAGATTGCTTATACCACCGAGTACACAGAGACCTGGGAAAGATACGTGCAGGCTCTCAATAACTTCCTCTCACGTGCGTTTATTTAACAACCCTAATGCTGCATGTATTGCACAGTAAATATAGACATTAGGCATTTGATTAAAGCTACGGTATCTAACTTCTGAAAATCTAGTGGTTAATAAATGAAGAGCTTACAGGC

Function

symbol description
atp1b2b Predicted to enable ATPase activator activity. Acts upstream of or within heart development; sensory organ development; and startle response. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of sodium:potassium-exchanging ATPase complex. Is expressed in several structures, including fin; heart; otic epithelium; pronephric duct; and sensory system. Orthologous to human ATP1B2 (ATPase Na+/K+ transporting subunit beta 2).

GO:

id name namespace
GO:0006883 cellular sodium ion homeostasis biological_process
GO:0007507 heart development biological_process
GO:0042472 inner ear morphogenesis biological_process
GO:0036376 sodium ion export across plasma membrane biological_process
GO:0048840 otolith development biological_process
GO:0030007 cellular potassium ion homeostasis biological_process
GO:0048923 posterior lateral line neuromast hair cell differentiation biological_process
GO:0006811 ion transport biological_process
GO:0006813 potassium ion transport biological_process
GO:0006814 sodium ion transport biological_process
GO:1990573 potassium ion import across plasma membrane biological_process
GO:0001964 startle response biological_process
GO:0005890 sodium cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005391 sodium molecular_function
GO:0001671 ATPase activator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-010718-1 Predicted to enable ATPase activator activity. Acts upstream of or within heart development; sensory organ development; and startle response. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of sodium:potassium-exchanging ATPase complex. Is expressed in several structures, including fin; heart; otic epithelium; pronephric duct; and sensory system. Orthologous to human ATP1B2 (ATPase Na+/K+ transporting subunit beta 2).

Ensembl:

ensembl_id ENSDARG00000034424

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00060728 False 2432 mRNA 0.43 8 38475531 38506981
TCONS_00060729 True 429 processed_transcript 0.46 3 38490346 38506648

Neighbor

gene id symbol gene type direction distance location
XLOC_031272 chrne coding downstream 24449 38440099 ~ 38451082 (-)
XLOC_031271 pld2 coding downstream 36918 38388443 ~ 38438613 (-)
XLOC_031270 mink1 coding downstream 90776 38301906 ~ 38384755 (-)
XLOC_031269 NA coding downstream 219787 38250044 ~ 38255744 (-)
XLOC_031268 slc12a9 coding downstream 227069 38215924 ~ 38248462 (-)
XLOC_031274 CR854980.1 coding upstream 10505 38517486 ~ 38533861 (-)
XLOC_031275 znhit1 coding upstream 97896 38604877 ~ 38611407 (-)
XLOC_031276 NA coding upstream 107887 38614868 ~ 38633719 (-)
XLOC_031277 NA coding upstream 113976 38620957 ~ 38622971 (-)
XLOC_031278 si:ch211-271e10.1 coding upstream 134952 38641933 ~ 38645353 (-)
XLOC_031259 BX640520.1 non-coding downstream 437314 38035337 ~ 38038217 (-)
XLOC_031251 NA non-coding downstream 763681 37708702 ~ 37711850 (-)
XLOC_031250 NA non-coding downstream 871796 37592276 ~ 37603735 (-)
XLOC_031249 NA non-coding downstream 992511 37480447 ~ 37483020 (-)
XLOC_031280 BX640512.1 non-coding upstream 190515 38697496 ~ 38705831 (-)
XLOC_031284 NA non-coding upstream 283751 38790732 ~ 38791845 (-)
XLOC_031285 BX640512.5 non-coding upstream 291223 38798204 ~ 38798318 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000039_06313617_06317466 ATP1B2B coding CI01000039 null 6313433 ~ 6318745 (+)