XLOC_031277


Basic Information

Item Value
gene id XLOC_031277
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 38620957 ~ 38622971 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00062052
ATGCAATCGGTTTCGGGTGGGATCCGACTCTTACAAATCACTTAAGTGAGCCGATTCCTAGAACCGAACCGAGTCACTCGACTCAAACAATGCCGACTCGCTTCACTAGACAACGTGGAGATGTCGTGGTCTCATCCAAACGGATTTATCGGTAAGTGTTGAAATGTCCAACTTTGTTAATTATATAATCGTTATATATTTCTGTATAGCATGTAATTCACCAAGTAACTTTAGCTTCTTTTGTCACGCTGTTTAGCGCGCCTATTAAACGAAGTTACCAATTcactatattactatattataccAAAACACTATATCACTATAATTAtagtcacatcagcagcagcacgtgcGCTATGAGTGAAAAGATTAGAACGCGTGTTTGTAACGTTAATGCTAATTTCGTGGTATTAGAGAGtgtttgagtttttaaaaagGTAATCTTCTGTTAACTTACTGTTAACTGTGTTCTGTTTCAGCACAGCATTGAGTTAAAGTGACCACAGAATAAAGTAAGCAAGGTAAGAACTGGCCTTCACTTCATTATAAACCTCATtatcaaaccaaaacaaaaatgatattgTCTAACACTATTTACTAATTACAACTTTTTGTATAGTGTCAGAGGCAGAggagacacatcaaccagcaagtgtgtaactTATCAGgaaaatgactgactgaatggatGACTGTCTAGGTTGCAAGCTGGACATACATGTTACAGTTAAGTATTTCagctacaacatactgttaaatCACAGTAACCATCTTGCCATTAAATGTAACTTCACAGTAAAGTATATTTAATTCTACAAGAGAATACGGTGAAATCACAGAAATGGGCCTTACTATCTACCTTGACGTCACATAtggctgtaatttcactgtaagtAAGTGTAAAACAAATCACAGTGGCTTACTGGGAAAGTAATACAATTATTAGTCAGTAATTTACTGTTAATTAGGggtcaaatattttacaatgtatcAATAAAACTCGTAAACATTTTTCTGTCATTCTGTTTTTTAAGGTGAGCGCTGAATTTAAGAGAGAAGCCACTGTGCACCGTGGATCTTCACAGCTGCTGAGGAGCTCTTGGAGTAAGACAGAGATCTGAGACTAAAGGTAGAGTTTATGATGTTTATCATGTTTACAGTTTCTGACTGTATGTCATAACATTATAACAGATTATTaacatattttctcttttattaatttttttttcttactgttgCTCAATGGAATTGGACAATGAAGAATCGACAAGAACTGAACGGCTTGTGAGGGCAGTAAAGTTGACCTGAGCAGGGGCCTTCTACAGGGGACCGCCTAAAGATActggcatcatcatcatcatcattgaagGTGTTAAAGTTCTTATAGACCTCATCTTTACCAGACTCAGGCAAACTCTGCTTTCACTCTGCCCAAAGCCCCAGCTGGACTGTTTTGGTGGCCCAGGGTATCtgatcaggccccggaagtgactgtGGAAACTTGACTGGCCCTGGCTCGCATTGGCACGCTAACTTACGTTGCGAGAGTGAAAACACGGCTCTTGACTACATTCCCAGAGCTTGTGTCCACCTGGGTTTGACCTATGCATTTTAACTGTGacaaagaaaaatgtttttacaagTGACTGTCTGGTTAACACTGGAAGATATTAGAGGGTAGTATACCCATAAACTGCTGTGTCCTCTTTGCTTCAATGAATCTGCATTATTCTGGCAAATAATACCTTTCATGCATTAAATCAGATAAATTTCACTCTAAgactattgttttaaataatattgtttaatgtcCAGTTGTTTGaaactgctgtttaaaaaaagatgatcAAAGTCCTTGTTAAGATGATCAGTTTGTTTATATGTACatgttttattgtgtattatatGACGTATTGTCTATTATAAGATTGTTGTTACTCTGTATTGTGGCTCCACACTGCTGAACAGGCTCCACTAATTTGagctaaattgaattaaattttactCAATCCATA

Function

GO:

id name namespace
GO:0048729 tissue morphogenesis biological_process
GO:0042692 muscle cell differentiation biological_process
GO:0048731 system development biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0048741 skeletal muscle fiber development biological_process
GO:0048747 muscle fiber development biological_process
GO:0021546 rhombomere development biological_process
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0002009 morphogenesis of an epithelium biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007519 skeletal muscle tissue development biological_process
GO:0048513 animal organ development biological_process
GO:1990399 epithelium regeneration biological_process
GO:0071599 otic vesicle development biological_process
GO:0021593 rhombomere morphogenesis biological_process
GO:0021594 rhombomere formation biological_process
GO:0035295 tube development biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0014904 myotube cell development biological_process
GO:0048568 embryonic organ development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0048589 developmental growth biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:0048596 embryonic camera-type eye morphogenesis biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0031076 embryonic camera-type eye development biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071696 ectodermal placode development biological_process
GO:0040007 growth biological_process
GO:0070654 sensory epithelium regeneration biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0048048 embryonic eye morphogenesis biological_process
GO:0061061 muscle structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032502 developmental process biological_process
GO:0060537 muscle tissue development biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0060538 skeletal muscle organ development biological_process
GO:0007417 central nervous system development biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0007420 brain development biological_process
GO:0014706 striated muscle tissue development biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0060562 epithelial tube morphogenesis biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0005730 nucleolus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00062052 True 2015 lncRNA 0.37 1 38620957 38622971

Neighbor

gene id symbol gene type direction distance location
XLOC_031275 znhit1 coding downstream 9550 38604877 ~ 38611407 (-)
XLOC_031274 CR854980.1 coding downstream 87096 38517486 ~ 38533861 (-)
XLOC_031273 atp1b2b coding downstream 113976 38475531 ~ 38506981 (-)
XLOC_031272 chrne coding downstream 169875 38440099 ~ 38451082 (-)
XLOC_031271 pld2 coding downstream 182344 38388443 ~ 38438613 (-)
XLOC_031278 si:ch211-271e10.1 coding upstream 18962 38641933 ~ 38645353 (-)
XLOC_031279 BX640512.3 coding upstream 63075 38686046 ~ 38711506 (-)
XLOC_031280 BX640512.1 coding upstream 74525 38697496 ~ 38705831 (-)
XLOC_031281 BX640512.4 coding upstream 109890 38732861 ~ 38762414 (-)
XLOC_031282 si:dkey-58f10.4 coding upstream 148808 38771779 ~ 38777852 (-)
XLOC_031269 NA non-coding downstream 365213 38250044 ~ 38255744 (-)
XLOC_031259 BX640520.1 non-coding downstream 582740 38035337 ~ 38038217 (-)
XLOC_031251 NA non-coding downstream 909107 37708702 ~ 37711850 (-)
XLOC_031250 NA non-coding downstream 1017222 37592276 ~ 37603735 (-)
XLOC_031249 NA non-coding downstream 1137937 37480447 ~ 37483020 (-)
XLOC_031284 NA non-coding upstream 167761 38790732 ~ 38791845 (-)
XLOC_031285 BX640512.5 non-coding upstream 175233 38798204 ~ 38798318 (-)
XLOC_031286 BX571800.1 non-coding upstream 269651 38892622 ~ 38892759 (-)
XLOC_031287 BX571800.2 non-coding upstream 406840 39029811 ~ 39029925 (-)

Expression


Co-expression Network