XLOC_031283 (cnot6l)


Basic Information

Item Value
gene id XLOC_031283
gene name cnot6l
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 38786481 ~ 38824466 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00060740
AGTTGTAGGGGAGCGTGGACCGGAGCGGAAGCTCAGACTGTTGTCCTTCCTCCTGCCCGACTCTCAGGATGAGGATCGGTCACAGTTTGTCTGTATGTCTCTGATTAAATCACACACCAGCAGCTCCTCTCCCACCTCCCGAATGCAGATTAACAGGCATGCCAAAGGAAAAATATGATCCTCCAGACCCACGCAGATTATACACCATCATGTCAGCCGAGGAAGTGGCCAGTGGAAAGAAATCACACTGGACCGAGTTGGAGATTTCTGGGCGGGTCAGAAGCCTGAGCAGTTCACTATGGACGCTGACCCATCTGACTGCTCTccacatcaacaacaacaacctgAGCCGGATTCCTCCAGAAATCGCAAAGCTGCCCCATCTCGTCTACCTGAACCTGTCCTCCAACAAACTGCGCAGCCTGCCAGCAGAACTCGGCAACATGGTGACTCTCAGgGAATTGCTTTTGAATAACAATTGTTTACGAGTTTTGCCTTATGAACTTGGTCGGCTGTTCCAATTGCAAACCCTCGGCCTCAAAGGTAATCCATTGTCCCAGGATATACTCAACCTGTATCAGGAGCCTGATGGAACAAggaaattattaaattacatgCTCGACAATCTTGCAGTCCACCCAGAACAACTCCCCCAAAGACCTTGGATCACTCTGAGGGAGAGAGACCAAATGATGCCCACAGCTGTGTTCACAGTAATGTGCTACAATGTATTGTGCGACAAGTATGCAACAAGGCAGCTGTATGGCTATTGTCCTTCATGGGCCCTTAACTGGGAGTACAGGAAGAAGGGCATTATGGAGGAGATCACCAACTGTGACGCTGACATCATCAGCCTGCAGGAGGTGGAAACCGAGCAGTACTACACTTTCTTTCTGGAAACACTGAAAGATCGTGGATATGATGGATTTTTCTGTCCAAAGTCTCGTGCCAAACTCGTGTCAGAACAGGAGCGTAAACATGTGGATGGCTGTGGTGTGTTTTTCAAGACCGAGAAatttgctCTGGTGCAGAAacacacagtggagttcaatcaAGTAGCCATGGCGAACTCAGAGGGCTCGGAGGTTATGCTAAACAGAGTTATGACCAAAGATAACATCGGAGTAGCCGTCCTGCTGGAGGTGAAGAAAGACCTGTTTGCTACTGGCTTAAAGCCACCTCCAGAGAAACAGCTCCTGCTTGTAGCTAACGCCCACATGCACTGGGATCCAGAATACTCGGATGTGAAGCTCATCCAGACTATGATGTTCCTGTCTGAGCTCAAGAGCATCGCTGAGAGGGCCTCGGGATCTATCAACTCTTCTTCACCCACATCAGAAACAAGCTCTATCCCTATCGTCCTGTGTGCTGATCTCAACTCCCTCCCAGATTCTGGTGTGGTGGAGTATCTGAGCAATGGCGGAGTTGCAGAAAATCACAAAGACTTTAAAGAACTGCGCTACAGCGACTGTTTAACTAACTTCAGCTGCAATGGCAAAAACGGCAAGCCTGATGGCAGTATCACACACAGTTTCCAGCTGAAGAGTGCCTATGAGGGGAATCTCATGCCCTACACCAACTACACTTATGACTTCAAGGGTGTGATTGACTACATCTTCTTCTCAAAGACACACATGAGCGTTCTGGGTGTTCTGGGTCCATTGGAGACACAATGGCTGAAGGACAACAACATAACCGGCTGCCCTCACCCTCACATCCCCTCCGACCACTTCTCCCTCCTGGCTCAGCTGGAGTACCATCCGCCTTTACCCCCCCTCAACGGGCTGCATCTGCCTGTCCACAGTACTGCCTGCGAAAGCAAGATGCTTACAGAGTGAACCAGCACcagcattcatccatccactcatccttccatccatccatccatccatccatttcttcACCAGAGAGGCATGATGACTACTAAATGGCCATGATTCAGTTATAACGTTCTTATAAAGAAAAGATGTCATGGTCAGCAATGTTCAAATGAATTGTTAATGAAATTGCTAAATATCTGAGGAATGTAAATTGGCAGTTTCCCTTGTTTAATAGCAGCAATTTTGATTTCTaaggttttttttaatacattttaaaaacctttCATGTAATCCTAACAAAAATTCACATCAAAGCATATTTCCTACAAATGTATTCCGAGTGCTCAGATTAAAATCCAGATTGCTGAACATGCAGTgtttgtataataatatatatagtttaatatataGTAAAAGCATGCACTATGGGGGTTGAGTCTTGTTGAGACACTCTAATTAATGACAGACATGTATTATTGTAAAGGAACATTTTGCAAAGAGACCCCATGTACAATGAATAGAAAACCCCTATAAAAAAGAAGTTCCACAACACAAAGATGGCTTTTCTCATtgacttttgagacttttttcaTGCAGTTTCTTCTGGAATACATGTTTTGTAAACCTTGTTTAGTCTTTGAACACATGATTGGTGATGATATGAGAACAGAACTTGTTGTTGTGTGCGTTTTGCAACTGAAAATGCTCCTTCATGAAGCTTATTTGTAATACACTAAATACTCAACAAAAAAACTTGTCCCAAACTCAAAGGCAATAaagatgttattttaaa
>TCONS_00060741
CATGCCAAAGGAAAAATATGATCCTCCAGACCCACGCAGATTATACACCATCATGTCAGCCGAGGAAGTGGCCAGTGGAAAGAAATCACACTGGACCGAGTTGGAGATTTCTGGGCGGGTCAGAAGCCTGAGCAGTTCACTATGGACGCTGACCCATCTGACTGCTCTccacatcaacaacaacaacctgAGCCGGATTCCTCCAGAAATCGCAAAGCTGCCCCATCTCGTCTACCTGAACCTGTCCTCCAACAAACTGCGCAGCCTGCCAGCAGAACTCGGCAACATGGTGACTCTCAGgGAATTGCTTTTGAATAACAATTGTTTACGAGTTTTGCCTTATGAACTTGGTCGGCTGTTCCAATTGCAAACCCTCGGCCTCAAAGGTAATCCATTGTCCCAGGATATACTCAACCTGTATCAGGAGCCTGATGGAACAAggaaattattaaattacatgCTCGACAATCTTGCAGTCCACCCAGAACAACTCCCCCAAAGACCTTGGATCACTCTGAGGGAGAGAGACCAAATGATGCCCACAGCTGTGTTCACAGTAATGTGCTACAATGTATTGTGCGACAAGTATGCAACAAGGCAGCTGTATGGCTATTGTCCTTCATGGGCCCTTAACTGGGAGTACAGGAAGAAGGGCATTATGGAGGAGATCACCAACTGTGACGCTGACATCATCAGCCTGCAGGAGGTGGAAACCGAGCAGTACTACACTTTCTTTCTGGAAACACTGAAAGATCGTGGATATGATGGATTTTTCTGTCCAAAGTCTCGTGCCAAACTCGTGTCAGAACAGGAGCGTAAACATGTGGATGGCTGTGGTGTGTTTTTCAAGACCGAGAAatttgctCTGGTGCAGAAacacacagtggagttcaatcaAGTAGCCATGGCGAACTCAGAGGGCTCGGAGGTTATGCTAAACAGAGTTATGACCAAAGATAACATCGGAGTAGCCGTCCTGCTGGAGGTGAAGAAAGACCTGTTTGCTACTGGCTTAAAGCCACCTCCAGAGAAACAGCTCCTGCTTGTAGCTAACGCCCACATGCACTGGGATCCAGAATACTCGGATGTGAAGCTCATCCAGACTATGATGTTCCTGTCTGAGCTCAAGAGCATCGCTGAGAGGGCCTCGGGATCTATCAACTCTTCTTCACCCACATCAGAAACAAGCTCTATCCCTATCGTCCTGTGTGCTGATCTCAACTCCCTCCCAGATTCTGGTGTGGTGGAGTATCTGAGCAATGGCGGAGTTGCAGAAAATCACAAAGACTTTAAAGAACTGCGCTACAGCGACTGTTTAACTAACTTCAGCTGCAATGGCAAAAACGGCAAGCCTGATGGCAGTATCACACACAGTTTCCAGCTGAAGAGTGCCTATGAGGGGAATCTCATGCCCTACACCAACTACACTTATGACTTCAAGGGTGTGATTGACTACATCTTCTTCTCAAAGACACACATGAGCGTTCTGGGTGTTCTGGGTCCATTGGAGACACAATGGCTGAAGGACAACAACATAACCGGCTGCCCTCACCCTCACATCCCCTCCGACCACTTCTCCCTCCTGGCTCAGCTGGAGTACCATCCGCCTTTACCCCCCCTCAACGGGCTGCATCTGCCTGTCCACAGTACTGCCTGCGAAAGCAAGATGCTTACAGAGTGA
>TCONS_00060743
CAGCTCCTCTCCCACCTCCCGAATGCAGATTAACAGGCATGCCAAAGGAAAAATATGATCCTCCAGACCCACGCAGATTATACACCATCATGTCAGCCGAGGAAGTGGCCAGTGGAAAGAAATCACACTGGACCGAGTTGGAGATTTCTGGGCGGGTCAGAAGCCTGAGCAGTTCACTATGGACGCTGACCCATCTGACTGCTCTccacatcaacaacaacaacctgAGCCGGATTCCTCCAGAAATCGCAAAGCTGCCCCATCTCGTCTACCTGAACCTGTCCTCCAACAAACTGCGCAGCCTGCCAGCAGAACTCGGCAACATGGTGACTCTCAGGTAATCCATTGTCCCAGGATATACTCAACCTGTATCAGGAGCCTGATGGAACAAggaaattattaaattacatgCTCGACAATCTTGCAGTCCACCCAGAACAACTCCCCCAAAGACCTTGGATCACTCTGAGGGAGAGAGACCAAATGATGCCCACAGCTGTGTTCACAGTAATGTGCTACAATGTATTGTGCGACAAGTATGCAACAAGGCAGCTGTATGGCTATTGTCCTTCATGGGCCCTTAACTGGGAGTAC

Function

symbol description
cnot6l Predicted to enable poly(A)-specific ribonuclease activity. Predicted to be involved in nuclear-transcribed mRNA poly(A) tail shortening. Predicted to act upstream of or within gene silencing by RNA; mRNA processing; and regulation of translation. Predicted to be part of CCR4-NOT complex. Predicted to be active in cytoplasm and nucleus. Orthologous to human CNOT6L (CCR4-NOT transcription complex subunit 6 like).

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0006417 regulation of translation biological_process
GO:0031047 gene silencing by RNA biological_process
GO:0000289 nuclear-transcribed mRNA poly(A) tail shortening biological_process
GO:0005634 nucleus cellular_component
GO:0030014 CCR4-NOT complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004518 nuclease activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004527 exonuclease activity molecular_function
GO:0004535 poly(A)-specific ribonuclease activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0000175 3'-5'-exoribonuclease activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-302 Predicted to enable poly(A)-specific ribonuclease activity. Predicted to be involved in nuclear-transcribed mRNA poly(A) tail shortening. Predicted to act upstream of or within gene silencing by RNA; mRNA processing; and regulation of translation. Predicted to be part of CCR4-NOT complex. Predicted to be active in cytoplasm and nucleus. Orthologous to human CNOT6L (CCR4-NOT transcription complex subunit 6 like).

Ensembl:

ensembl_id ENSDARG00000054597

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00060740 False 2613 mRNA 0.45 13 38786481 38824466
TCONS_00060741 False 1681 mRNA 0.49 12 38787256 38820046
TCONS_00060743 True 594 processed_transcript 0.50 6 38814164 38824346

Neighbor

gene id symbol gene type direction distance location
XLOC_031282 si:dkey-58f10.4 coding downstream 8629 38771779 ~ 38777852 (-)
XLOC_031281 BX640512.4 coding downstream 24067 38732861 ~ 38762414 (-)
XLOC_031279 BX640512.3 coding downstream 74975 38686046 ~ 38711506 (-)
XLOC_031280 BX640512.1 coding downstream 80650 38697496 ~ 38705831 (-)
XLOC_031278 si:ch211-271e10.1 coding downstream 141128 38641933 ~ 38645353 (-)
XLOC_031286 BX571800.1 coding upstream 68156 38892622 ~ 38892759 (-)
XLOC_031287 BX571800.2 coding upstream 205345 39029811 ~ 39029925 (-)
XLOC_031288 NA coding upstream 217588 39042054 ~ 39045354 (-)
XLOC_031289 paqr3a coding upstream 330151 39154617 ~ 39171302 (-)
XLOC_031290 AL935062.1 coding upstream 500302 39324768 ~ 39324884 (-)
XLOC_031276 NA non-coding downstream 152762 38614868 ~ 38633719 (-)
XLOC_031277 NA non-coding downstream 163510 38620957 ~ 38622971 (-)
XLOC_031269 NA non-coding downstream 530737 38250044 ~ 38255744 (-)
XLOC_031259 BX640520.1 non-coding downstream 748264 38035337 ~ 38038217 (-)
XLOC_031294 NA non-coding upstream 1056192 39880658 ~ 39881073 (-)

Expression


Co-expression Network