XLOC_031294


Basic Information

Item Value
gene id XLOC_031294
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 39880658 ~ 39881073 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00062056
gctTTGGACTCTCACTGGGTTCTGGTTTTGGATATCCTTGTCCCATATTGCTGAAGCTGGTGCGTAAtacttatttactaaaatttattaaatcccctgatttgtggaacccaaatttaatCGGGTACAACAACACAAATCCTTCTGTGCAATTTACTGTTTGAAGTAAACTTGACAGGATACTCTGTGCTCTAGAACACAGACCTCTCAACTCAATTGTAACTAAAATCTTACGATTTCCTGAGATACACCGGAGCAGGCAGTGTGAATAAAAATTCTCTTACCTGATCAGatgtatcccggac

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0048762 mesenchymal cell differentiation biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043009 chordate embryonic development biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0048568 embryonic organ development biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:0048863 stem cell differentiation biological_process
GO:0048864 stem cell development biological_process
GO:0010468 regulation of gene expression biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0060485 mesenchyme development biological_process
GO:0014031 mesenchymal cell development biological_process
GO:0014032 neural crest cell development biological_process
GO:0014033 neural crest cell differentiation biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0061053 somite development biological_process
GO:0050794 regulation of cellular process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0007420 brain development biological_process
GO:0030902 hindbrain development biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0048705 skeletal system morphogenesis biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko03070 Bacterial secretion system
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00062056 True 305 lncRNA 0.39 2 39880658 39881073

Neighbor

gene id symbol gene type direction distance location
XLOC_031293 rasgef1ba coding downstream 74784 39706345 ~ 39805874 (-)
XLOC_031292 prkg2 coding downstream 178313 39679767 ~ 39702345 (-)
XLOC_031291 antxr2a coding downstream 406423 39386225 ~ 39474235 (-)
XLOC_031290 AL935062.1 coding downstream 555774 39324768 ~ 39324884 (-)
XLOC_031289 paqr3a coding downstream 709356 39154617 ~ 39171302 (-)
XLOC_031295 pimr200 coding upstream 100406 39981479 ~ 39987192 (-)
XLOC_031296 cds1 coding upstream 128885 40009958 ~ 40040488 (-)
XLOC_031297 wdfy3 coding upstream 171857 40052930 ~ 40190949 (-)
XLOC_031298 si:dkey-193c22.1 coding upstream 319745 40200818 ~ 40210447 (-)
XLOC_031299 NA coding upstream 347215 40228288 ~ 40230908 (-)
XLOC_031288 NA non-coding downstream 835304 39042054 ~ 39045354 (-)
XLOC_031287 BX571800.2 non-coding downstream 850733 39029811 ~ 39029925 (-)
XLOC_031286 BX571800.1 non-coding downstream 987899 38892622 ~ 38892759 (-)
XLOC_031285 BX640512.5 non-coding downstream 1082340 38798204 ~ 38798318 (-)
XLOC_031304 NA non-coding upstream 676159 40557232 ~ 40713992 (-)
XLOC_031306 NA non-coding upstream 929715 40810788 ~ 40829833 (-)
XLOC_031309 BX470118.1 non-coding upstream 1123075 41004148 ~ 41004262 (-)
XLOC_031312 CR753861.2 non-coding upstream 1302063 41183136 ~ 41183252 (-)

Expression


Co-expression Network