Item | Value |
---|---|
gene id | XLOC_031304 |
gene name | NA |
gene type | non-coding |
species | zebrafish (Danio rerio) |
category of species | model fish |
Item | Value |
---|---|
chromosome id | NC_007116.7 |
NCBI id | CM002889.2 |
chromosome length | 72500376 |
location | 40557232 ~ 40713992 (-) |
genome version | GRCz11_2017_zebrafish_Genome |
id | name | namespace |
---|---|---|
GO:0008152 | metabolic process | biological_process |
GO:0034470 | ncRNA processing | biological_process |
GO:0090304 | nucleic acid metabolic process | biological_process |
GO:0006396 | RNA processing | biological_process |
GO:0006399 | tRNA metabolic process | biological_process |
GO:0006400 | tRNA modification | biological_process |
GO:0001510 | RNA methylation | biological_process |
GO:0030488 | tRNA methylation | biological_process |
GO:0006139 | nucleobase-containing compound metabolic process | biological_process |
GO:0006725 | cellular aromatic compound metabolic process | biological_process |
GO:0043412 | macromolecule modification | biological_process |
GO:1901360 | organic cyclic compound metabolic process | biological_process |
GO:0043414 | macromolecule methylation | biological_process |
GO:0044237 | cellular metabolic process | biological_process |
GO:0044238 | primary metabolic process | biological_process |
GO:0044260 | cellular macromolecule metabolic process | biological_process |
GO:0071704 | organic substance metabolic process | biological_process |
GO:0043170 | macromolecule metabolic process | biological_process |
GO:0009451 | RNA modification | biological_process |
GO:0008033 | tRNA processing | biological_process |
GO:0006807 | nitrogen compound metabolic process | biological_process |
GO:0034641 | cellular nitrogen compound metabolic process | biological_process |
GO:0032259 | methylation | biological_process |
GO:0034660 | ncRNA metabolic process | biological_process |
GO:0046483 | heterocycle metabolic process | biological_process |
GO:0044424 | obsolete intracellular part | cellular_component |
GO:0044451 | obsolete nucleoplasm part | cellular_component |
GO:0005622 | intracellular anatomical structure | cellular_component |
GO:0005634 | nucleus | cellular_component |
GO:0005654 | nucleoplasm | cellular_component |
GO:0043226 | organelle | cellular_component |
GO:0043227 | membrane-bounded organelle | cellular_component |
GO:0043229 | intracellular organelle | cellular_component |
GO:0043231 | intracellular membrane-bounded organelle | cellular_component |
GO:0016741 | transferase activity, transferring one-carbon groups | molecular_function |
GO:0008168 | methyltransferase activity | molecular_function |
GO:0008175 | tRNA methyltransferase activity | molecular_function |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
TCONS_00060768 | False | 1592 | lncRNA | 0.42 | 3 | 40557232 | 40713887 |
TCONS_00062059 | False | 1669 | lncRNA | 0.36 | 2 | 40584818 | 40594989 |
TCONS_00060770 | False | 1606 | lncRNA | 0.38 | 4 | 40584818 | 40713800 |
TCONS_00060769 | False | 1732 | lncRNA | 0.38 | 3 | 40584818 | 40713992 |
TCONS_00060771 | True | 1076 | lncRNA | 0.40 | 3 | 40600199 | 40713887 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
XLOC_031303 | fsta | coding | downstream | 46833 | 40504910 ~ 40510399 (-) |
XLOC_031302 | BX571674.1 | coding | downstream | 168689 | 40336828 ~ 40388543 (-) |
XLOC_031301 | hspb3 | coding | downstream | 260229 | 40296551 ~ 40297003 (-) |
XLOC_031300 | snx18a | coding | downstream | 264933 | 40272848 ~ 40292299 (-) |
XLOC_031299 | NA | coding | downstream | 326324 | 40228288 ~ 40230908 (-) |
XLOC_031305 | isl1 | coding | upstream | 14621 | 40728613 ~ 40734045 (-) |
XLOC_031306 | NA | coding | upstream | 96796 | 40810788 ~ 40829833 (-) |
XLOC_031307 | parp8 | coding | upstream | 130976 | 40844968 ~ 40910880 (-) |
XLOC_031308 | pdzd2 | coding | upstream | 217666 | 40931658 ~ 41049690 (-) |
XLOC_031309 | BX470118.1 | coding | upstream | 290156 | 41004148 ~ 41004262 (-) |
XLOC_031294 | NA | non-coding | downstream | 676159 | 39880658 ~ 39881073 (-) |
XLOC_031290 | AL935062.1 | non-coding | downstream | 1232348 | 39324768 ~ 39324884 (-) |
XLOC_031288 | NA | non-coding | downstream | 1511878 | 39042054 ~ 39045354 (-) |
XLOC_031287 | BX571800.2 | non-coding | downstream | 1527307 | 39029811 ~ 39029925 (-) |
XLOC_031312 | CR753861.2 | non-coding | upstream | 469144 | 41183136 ~ 41183252 (-) |
XLOC_031314 | NA | non-coding | upstream | 750101 | 41464093 ~ 41474260 (-) |
XLOC_031323 | CR931763.1 | non-coding | upstream | 1139446 | 41853438 ~ 41855394 (-) |