XLOC_031304



Basic Information


Item Value
gene id XLOC_031304
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 40557232 ~ 40713992 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00060768
ATCGATCATTGGTTTACTGAGAAAATCTTGGAAGTCCTGGGACAGGTTTCTGCGTCTATAGTAAACTTTGAGATTAGCCCGGATGAAGGTGCAAACTTAAGCCGTTTGCGTCGCACTGGAGACCAGTGATGTTAATGACTATCGCGGGAATAGCCGATGGAGAACATAGCAGCAACGCGCTTTTCCTCAGAGAATTAACAAGAATGAATCTCCTCATTGCTGACCGACACAATCAACAAACGCCACAAACGTCGCCACGGTAAACCCGTAGCTTTTATGTGGGGTGACGCCAAAGGACATTGGTCAAAAGCATAAGATTCAGTGCATCGGCCACCATCAGCCTATCCGAACATCCGAACAGACCAAGAAAGTGATGattgacgttccgccacaagatggcgacagagactgcttAATAAGttcttaggggagaaaaacagcattttctcagctCAAGTTTCAAACAACAGctaaacaaatcattataaatcagGCAGAATCTATATTTCGTCCCTTGCAGATCCAGGAGTGAGCGAGAGAAATGTCTCCTCAAGCAGAAAAACACCCTCTGTCACCGGCTGATGACAGTACCTGCCAACCATGTGCACCTCTGTACGGAAATGCAAAGCCTCGGAACAGGAGCGCAAAAGTTTCCTTTCAATTTCCCATCATGTTATTGAGCAATGGGGCATTCTGTCTCTCCATTCATGTGGAGATGGGGTTTTCAAGCTAAATTAGTAATGATGTTGGCATGTTCATCAGACTGACTTGGTTTCTTTTTTCAGTTCACCTCTGTTCTGTTACAGCGTCTTGTGTGCATTTTATTaccttttgtctttgttttcatCAATTATACCAAGTCATTTAACTTAAATTTATCACGAATAGACGCATTTAGATTGTACACTAATAAATGCTGGGCCCTTTTTGGTcaaattttggggaaaaaatgaacaattgtattacagtttaaaataatccTCACAAACATGACAAAGAATTGAGAGGttattatatttttgcatttttataattgttttaggTCTCACTTTATAGTGTTTTTAACTACTAAGTACTTACAtcctaatataaatacaatgtactcaaTGTGTTCATAATGCCTTGCAAAACACTTCTGGTCCTCTTGAGGTGGAATATGAGTAGGGTTAGGGACATGTTTGATGGTATGGGTAGGTATAAaagtgggttaaggtgtaagggacaACAGTGTAttcataaatgtaattacagaaatgaaTTACAGATGTAGGTGGGTAGCggtgtagcctcacagcaagaggggcGCTGATTCGactctcagctgggtcagttggcattaatgtgtggagtttgcatgttctccctgtgttagcgagggtttcctctgagtgctccggtttccccgacaggccaaagacatgcactatagctgaattgggtaagctaaaattgtccgtagtgtatgagtgtgtataagtgtttcccagtgatggattgcagcaaggtagggcatccgctgtgtgaaacatattcTGCATAAGTTgatgattcattctgctgtggtgacccctgtttaataaagtgactaagct
>TCONS_00062059
gcagcctcttgcgattagttaatcgcaacgtttcaaattgcgattcgatttcgattaattgcacaggcCTAATCTGAACTTTTCATATGTAAACTGAATGATAAAGAGAATGCCGGTTTGGCACTGTATTTAATGTCAGTCAAACAGAATCATTATTTTCACTGTAGAATATCAATGCAAACTGAAATATTCTACATAATGTTACAAAACTACATAAAAATGCCTCATTTGAAACCAAAAATCCTGAATCTGTGGCTTTTAAAATGGCTTCAACATTTCTCATTCCTGCTAGACACATATTGTACTTTTCAAGGCAGAAGGGATGTTTCATAAGATTAGCTGCAAAAAACACAGTAAAGAGTGTGAGGTAAACCAAACCAGGACGACCAGCTAAAATTACTAATTGGTTTACTGATCAGTTGTACTTTGTTCGATTGATTTGCAATTAATTCTGGTTTGTGGTTCACAGAAGACAGAGCTTGGCGCCAACCTTGGAGGCGACTGATACTCTATACTCACTAGGAGAATGGAGGAGAAAGCCATAATTCTTGCGATCACATACGATCAAAGTGTGGCCAGCTCTCAGGCATCCACCCTCAGCGCCATCCCCATAATTACTTTGAGTGGACTGCCGATGACCCCACATGGATAAAATTATTGCGTCCACTATTTTCTCCACAGCACTGAATAGTCAACAAGAAATGTGCATGAAGCAATATGTTGTCTTGTGTTTTCTACCTCAAAGAAAATTGTCCTGATTTTGGTCTCAAGGCCTCCATCTGAAAATGACTTCATTGTGGAAAAATGGCTTTATTATAAGGCACCAATCTTCATTTGATGGCATTTTGTTGTCTTTGAAGAGAGCAGATTCATGTATACAGAAGTATGAGCAAATTGCGCcacttttctttcattttttggaACAATTTTGATAGAATTAGATTAAGAGCATGACATCTGTCTTAGCGATGCAGACATGTGGATTACACTCAGCTGTGTTtgagtaaacacaaaaaaaattaccaaGATATATTCTAGATCTGTTTGGATCTTGGTGTCTTGTGTATTTTGactatttaatgaaaatattaataaatacttgAGACGGGGCACGTCTTaaaatttagactttttttattCAACCCAGTGAGAAAAAAGGCTTTATGGTCACAGTTTTATAGCAATACTGCAAGCAATTTGCTCAGCTAAATTACTGAAGAGGATTTATATTTAAATCTTTATATAGATCAGCAGAGCCAAAACCAAATATCATATAAGAtgaatataccaaactattttacattgaGTACATTAATGTATTTCATAATATATTCAAAAATACACTGCATTACAATTAAACTCCACACAACTAcacattgcattacaatcaaaatgataaaagttaaggttattaattaccataattttattatttattcatttcatttcgGCATActccttttattaatcttttacTAATCGCCagcttatctagcatatgttttacgcagcagataaccttccagctgcaacccatcactggtatacacccaaacacacttattcactacagataatttagcttacccaattcacctatactgcatgtaaTTGGGCTTGTGAGGGaagccagagcacccagaggaaacccatggcaacacagggagaa
>TCONS_00060770
GGTGCAAACTTAAGCCGTTTGCGTCGCACTGGAGACCAGTGATGTTAATGACTATCGCGGGAATAGCCGATGGAGAACATAGCAGCAACGCGCTTTTCCTCAGAGAATTAACAAGAATGAATCTCCTCATTGCTGACCGACACAATCAACAAACGCCACAAACGTCGCCACGGTAAACCCGTAGCTTTTATGTGGGGTGACGCCAAAGGACATTGGTCAAAAGCATAAGATTCAGTGCATCGGCCACCATCAGCCTATCCGAACATCCGAACAGACCAAGAAAGTGATGattgacgttccgccacaagatggcgacagagactgcttAATAAGttcttaggggagaaaaacagcattttctcagctCAAGTTTCAAACAACAGctaaacaaatcattataaatcagAAGACAGAGCTTGGCGCCAACCTTGGAGGCGACTGATACTCTATACTCACTAGGAGAATGGAGGAGAAAGCCATAATTCTTGCGATCACATACGATCAAAGTGTGGCCAGCTCTCAGGCATCCACCCTCAGCGCCATCCCCATAATTACTTTGAGTGGACTGCCGATGACCCCACATGGATAAAATTATTGCGTCCACTATTTTCTCCACAGCACTGAATAGTCAACAAGAAATGTGCATGAAGCAATATGTTGTCTTGTGTTTTCTACCTCAAAGAAAATTGTCCTGATTTTGGTCTCAAGGCCTCCATCTGAAAATGACTTCATTGTGGAAAAATGGCTTTATTATAAGGCACCAATCTTCATTTGATGGCATTTTGTTGTCTTTGAAGAGAGCAGATTCATGTATACAGAAGTATGAGCAAATTGCGCcacttttctttcattttttggaACAATTTTGATAGAATTAGATTAAGAGCATGACATCTGTCTTAGCGATGCAGACATGTGGATTACACTCAGCTGTGTTtgagtaaacacaaaaaaaattaccaaGATATATTCTAGATCTGTTTGGATCTTGGTGTCTTGTGTATTTTGactatttaatgaaaatattaataaatacttgAGACGGGGCACGTCTTaaaatttagactttttttattCAACCCAGTGAGAAAAAAGGCTTTATGGTCACAGTTTTATAGCAATACTGCAAGCAATTTGCTCAGCTAAATTACTGAAGAGGATTTATATTTAAATCTTTATATAGATCAGCAGAGCCAAAACCAAATATCATATAAGAtgaatataccaaactattttacattgaGTACATTAATGTATTTCATAATATATTCAAAAATACACTGCATTACAATTAAACTCCACACAACTAcacattgcattacaatcaaaatgataaaagttaaggttattaattaccataattttattatttattcatttcatttcgGCATActccttttattaatcttttacTAATCGCCagcttatctagcatatgttttacgcagcagataaccttccagctgcaacccatcactggtatacacccaaacacacttattcactacagataatttagcttacccaattcacctatactgcatgtaaTTGGGCTTGTGAGGGaagccagagcacccagaggaaacccatggcaacacagggagaa
>TCONS_00060769
AGTCGATGAGGTTATAGCAAACTTAAGTTAGCCTAAACATTATAAGTAACATTTTGTAACAACTGTAGCACactgtgtattttataaaacTTACCGATGACATATATCGATCATTGGTTTACTGAGAAAATCTTGGAAGTCCTGGGACAGGTTTCTGCGTCTATAGTAAACTTTGAGATTAGCCCGGATGAAGGTGCAAACTTAAGCCGTTTGCGTCGCACTGGAGACCAGTGATGTTAATGACTATCGCGGGAATAGCCGATGGAGAACATAGCAGCAACGCGCTTTTCCTCAGAGAATTAACAAGAATGAATCTCCTCATTGCTGACCGACACAATCAACAAACGCCACAAACGTCGCCACGGTAAACCCGTAGCTTTTATGTGGGGTGACGCCAAAGGACATTGGTCAAAAGCATAAGATTCAGTGCATCGGCCACCATCAGCCTATCCGAACATCCGAACAGACCAAGAAAGTGATGattgacgttccgccacaagatggcgacagagactgcttAATAAGttcttaggggagaaaaacagcattttctcagctCAAGTTTCAAACAACAGctaaacaaatcattataaatcagAAAGCCATAATTCTTGCGATCACATACGATCAAAGTGTGGCCAGCTCTCAGGCATCCACCCTCAGCGCCATCCCCATAATTACTTTGAGTGGACTGCCGATGACCCCACATGGATAAAATTATTGCGTCCACTATTTTCTCCACAGCACTGAATAGTCAACAAGAAATGTGCATGAAGCAATATGTTGTCTTGTGTTTTCTACCTCAAAGAAAATTGTCCTGATTTTGGTCTCAAGGCCTCCATCTGAAAATGACTTCATTGTGGAAAAATGGCTTTATTATAAGGCACCAATCTTCATTTGATGGCATTTTGTTGTCTTTGAAGAGAGCAGATTCATGTATACAGAAGTATGAGCAAATTGCGCcacttttctttcattttttggaACAATTTTGATAGAATTAGATTAAGAGCATGACATCTGTCTTAGCGATGCAGACATGTGGATTACACTCAGCTGTGTTtgagtaaacacaaaaaaaattaccaaGATATATTCTAGATCTGTTTGGATCTTGGTGTCTTGTGTATTTTGactatttaatgaaaatattaataaatacttgAGACGGGGCACGTCTTaaaatttagactttttttattCAACCCAGTGAGAAAAAAGGCTTTATGGTCACAGTTTTATAGCAATACTGCAAGCAATTTGCTCAGCTAAATTACTGAAGAGGATTTATATTTAAATCTTTATATAGATCAGCAGAGCCAAAACCAAATATCATATAAGAtgaatataccaaactattttacattgaGTACATTAATGTATTTCATAATATATTCAAAAATACACTGCATTACAATTAAACTCCACACAACTAcacattgcattacaatcaaaatgataaaagttaaggttattaattaccataattttattatttattcatttcatttcgGCATActccttttattaatcttttacTAATCGCCagcttatctagcatatgttttacgcagcagataaccttccagctgcaacccatcactggtatacacccaaacacacttattcactacagataatttagcttacccaattcacctatactgcatgtaaTTGGGCTTGTGAGGGaagccagagcacccagaggaaacccatggcaacacagggagaa
>TCONS_00060771
ATCGATCATTGGTTTACTGAGAAAATCTTGGAAGTCCTGGGACAGGTTTCTGCGTCTATAGTAAACTTTGAGATTAGCCCGGATGAAGGTGCAAACTTAAGCCGTTTGCGTCGCACTGGAGACCAGTGATGTTAATGACTATCGCGGGAATAGCCGATGGAGAACATAGCAGCAACGCGCTTTTCCTCAGAGAATTAACAAGAATGAATCTCCTCATTGCTGACCGACACAATCAACAAACGCCACAAACGTCGCCACGGTAAACCCGTAGCTTTTATGTGGGGTGACGCCAAAGGACATTGGTCAAAAGCATAAGATTCAGTGCATCGGCCACCATCAGCCTATCCGAACATCCGAACAGACCAAGAAAGTGATGattgacgttccgccacaagatggcgacagagactgcttAATAAGttcttaggggagaaaaacagcattttctcagctCAAGTTTCAAACAACAGctaaacaaatcattataaatcaggGCACTTAACAGGGATATATGAACTACTCAGCCACGGCCACTAAAGCAGCATTTTAATCCCCGCTGTTCCATCTGTTTACATGAACAACTATTCATTCTGCAAATTACACCTAGAGCAGGACATACCATATGTAAGATAAGAATAGTGAAGCAAAATACTTTCATTATTGATTCACCACCATATTCTAAAGTTTCTTTTAGGTAACTAAGTAGAGTCCAAGTGAGCAAATGATCTTGAGGCGATACCATTACGTGCTTAAAAGGTCCTTTTTTCAGCTCTGTGGATCATTTCTGAGAAGTCTGAGTCAGCTAAATGACAATGAGGCATTTATAATCTCAAAATTATTGACAAAATACATCTTTAGACTCCTTTTAAAGGTTTCACAAAGTGTTAAAGGACATTTGCTGGAAAGAGTTTGAATGTGGCGCATTGAATGTATACAGTGCGGTTCATTAGTGCCAGGTTTACTTGCAGCTGTAATTGAATTTAGGTTTGAAATCTTTTTACACAGAAATGTGCCTTCTTGCTAAATTATGTCTATAAAGAGCTTTATATAATTTTGAATAAAGCGTGATGAATTCA

Function


GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0034470 ncRNA processing biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0006396 RNA processing biological_process
GO:0006399 tRNA metabolic process biological_process
GO:0006400 tRNA modification biological_process
GO:0001510 RNA methylation biological_process
GO:0030488 tRNA methylation biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:0043412 macromolecule modification biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0043414 macromolecule methylation biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0009451 RNA modification biological_process
GO:0008033 tRNA processing biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0032259 methylation biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0044451 obsolete nucleoplasm part cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0016741 transferase activity, transferring one-carbon groups molecular_function
GO:0008168 methyltransferase activity molecular_function
GO:0008175 tRNA methyltransferase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko04623 Cytosolic DNA-sensing pathway
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko03200 Viral proteins

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00060768 False 1592 lncRNA 0.42 3 40557232 40713887
TCONS_00062059 False 1669 lncRNA 0.36 2 40584818 40594989
TCONS_00060770 False 1606 lncRNA 0.38 4 40584818 40713800
TCONS_00060769 False 1732 lncRNA 0.38 3 40584818 40713992
TCONS_00060771 True 1076 lncRNA 0.40 3 40600199 40713887

Neighbor


gene id symbol gene type direction distance location
XLOC_031303 fsta coding downstream 46833 40504910 ~ 40510399 (-)
XLOC_031302 BX571674.1 coding downstream 168689 40336828 ~ 40388543 (-)
XLOC_031301 hspb3 coding downstream 260229 40296551 ~ 40297003 (-)
XLOC_031300 snx18a coding downstream 264933 40272848 ~ 40292299 (-)
XLOC_031299 NA coding downstream 326324 40228288 ~ 40230908 (-)
XLOC_031305 isl1 coding upstream 14621 40728613 ~ 40734045 (-)
XLOC_031306 NA coding upstream 96796 40810788 ~ 40829833 (-)
XLOC_031307 parp8 coding upstream 130976 40844968 ~ 40910880 (-)
XLOC_031308 pdzd2 coding upstream 217666 40931658 ~ 41049690 (-)
XLOC_031309 BX470118.1 coding upstream 290156 41004148 ~ 41004262 (-)
XLOC_031294 NA non-coding downstream 676159 39880658 ~ 39881073 (-)
XLOC_031290 AL935062.1 non-coding downstream 1232348 39324768 ~ 39324884 (-)
XLOC_031288 NA non-coding downstream 1511878 39042054 ~ 39045354 (-)
XLOC_031287 BX571800.2 non-coding downstream 1527307 39029811 ~ 39029925 (-)
XLOC_031312 CR753861.2 non-coding upstream 469144 41183136 ~ 41183252 (-)
XLOC_031314 NA non-coding upstream 750101 41464093 ~ 41474260 (-)
XLOC_031323 CR931763.1 non-coding upstream 1139446 41853438 ~ 41855394 (-)

Expression



Co-expression Network