XLOC_031864 (tmem237b)


Basic Information

Item Value
gene id XLOC_031864
gene name tmem237b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 9898683 ~ 9916534 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00062403
AGCCCACTCGTTTCCAACATCAACAACGGACAACGTGCAAAACAAAATCTCAGGTCACAAACGACAAATAAATTCGTAGATAATGTTTAATAGTTAATTGAACCGATAAACCTTCTATTACACGAATTGAAAGGATGGATCCGGAAGCAAAGGTTTCCAGCTCAAGGAGAAGAGATCTTCCTCCAATTCCTCAAGGACAGCGGCGGACACCTCGAGCACTGCCGTCTATGCCAAGTCAAGACACAGCAGAAGAAATGCCTGCTCCAAAAAGTAGGAAAAAGAAGGCCAAAAGAGATGCGGAGAGTGTGGACGAACCTGACGATGGTGGAATGGAAATGGGAGGCCTCGCCAGTCGCAGACAATCTGAATGTCCGGAGCCGTTGACCCCGGAGCCTCTGGACAATCCGCCACAAAGgaggaaaaagaagaagaaagctCAAGCCATCGATGCGGAGGGAGATCAGACAGACCTGGTGTCAAATGGAGATACATTGGATCAGAATACTGACGAAGAAGTGACACGCAAACCGAAAAAGAGGAAGGTGAAACCTAAAGTTACAGAAACGCAGTCCAACAATGAACTGGACGTAGAGGATGATGATGTCATCACGGACCCCCAGTCACCCATTCCTCAGCATTCCTTGTTCTCGGCTCCTCAGGGGCCGAGTCAGCCTGTGGGGAAGGTGTTTGTGGAGAAGAGTCGACGTTTTCAAGCGGCTGATCGAGTGGAGCAGTGGAAGCCCAGCGGTCCGATCGAGCAGAGCATTATGGACATCCGCTCAATGTGGACCACCAGAGACGTCTCCATGAGAGTACACAGCGGCTTCAGGGTGATTGGTCTGTTCTCTCATGGTTTTCTGGCTGGTTATGCGGTGTGGAACATCATAGTGGTGTATGTGTTGGCAGGGGATCAGATGAGCTCTCTGTCTAATCTGCTGCAGCAGTTTCACACACTGGCGTATCCTGCCCAGTCCCTGCTGTACCTGCTGCTCGCTCTCAGCACAGTCTCTGCCTTTGACAGGGTCAATCTAGCCAAAGCCCCAGCCGCTATGAGGAGTTTACTGAGACTGAGTCCTGTAGCACTCGCCTCTGTCTTCTACTTTTCAGCTCTTGTGTTATCATTAAGCCAGCAGATGACGAGTGATCGCATCAACCTCTACAAGTACTCCAGCTATAACACTACTCTCTGGCCGCCAGGCTCAGAGAGCAGCATCCTTTACCCCTGGATCACAGTGAATCTGGTGGTCTCTCTGCTGGTCGGCCTGGCCTGGATTCTCATGTCAACAAGTCCAGACATCGACAACACTGAAGCGTTTTTAATGTCGATGGAAATGGAATATCCAAATTCAGAAGAAAAGGGAAACGTCACTGCAtgacatttttactgtattttgatacTGTGTCATTGTGTATATATTAGACATGCcaaatgcttatttttaataaaccgtTCTCTGTCTGATTTA
>TCONS_00062404
ATTAATCCTCGCTTTAAGCACACAAAGATGTTTGTGTGTACATGGGCAAATGTCCACGTTTCTTTCATTGTCTTTCTTCTGTACTCTTGAGAGCAATGGCCAGAAGGGCAATGCGGACACCTCGAGCACTGCCGTCTATGCCAAGTCAAGACACAGCAGAAGAAATGCCTGCTCCAAAAAGTAGGAAAAAGAAGGCCAAAAGAGATGCGGAGAGTGTGGACGAACCTGACGATGGTGGAATGGAAATGGGAGGCCTCGCCAGTCGCAGACAATCTGAATGTCCGGAGCCGTTGACCCCGGAGCCTCTGGACAATCCGCCACAAAGgaggaaaaagaagaagaaagctCAAGCCATCGATGCGGAGGGAGATCAGACAGACCTGGTGTCAAATGGAGATACATTGGATCAGAATACTGACGAAGAAGTGACACGCAAACCGAAAAAGAGGAAGGTGAAACCTAAAGTTACAGAAACGCAGTCCAACAATGAACTGGACGTAGAGGATGATGATGTCATCACGGACCCCCAGTCACCCATTCCTCAGCATTCCTTGTTCTCGGCTCCTCAGGGGCCGAGTCAGCCTGTGGGGAAGGTGTTTGTGGAGAAGAGTCGACGTTTTCAAGCGGCTGATCGAGTGGAGCAGTGGAAGCCCAGCGGTCCGATCGAGCAGAGCATTATGGACATCCGCTCAATGTGGACCACCAGAGACGTCTCCATGAGAGTACACAGCGGCTTCAG
>TCONS_00062405
CCAAAAAGTAGGAAAAAGAAGGCCAAAAGAGATGCGGAGAGTGTGGACGAACCTGACGATGGTGGAATGGAAATGGGAGGCCTCGCCAGTCGCAGACAATCTGAATGTCCGGAGCCGTTGACCCCGGAGCCTCTGGACAATCCGCCACAAAGgaggaaaaagaagaagaaagctCAAGCCATCGATGCGGAGGGAGATCAGACAGACCTGGTGTCAAATGGAGATACATTGGATCAGAATACTGACGAAGAAGTGACACGCAAACCGAAAAAGAGGAAGGTGAAACCTAAAGTTACAGAAACGCAGTCCAACAATGAACTGGACGTAGAGGATGATGATGTCATCACGGACCCCCAGTCACCCATTCCTCAGCATTCCTTGTTCTCGGCTCCTCAGGGGCCGAGTCAGCCTGTGGGGAAGGTGTTTGTGGAGAAGAGTCGTGAGTTTCAACTCATTTGATTTGTCTACAAAGGAAAAGTATAAAGggccaaaataaaaaattgct

Function

symbol description
tmem237b Acts upstream of or within convergent extension involved in gastrulation. Predicted to be located in cilium and membrane. Predicted to be integral component of membrane. Predicted to be active in ciliary transition zone. Is expressed in central nervous system; pectoral fin bud; pharyngeal arch 3-7; and visual system. Human ortholog(s) of this gene implicated in Joubert syndrome and Joubert syndrome 14. Orthologous to human TMEM237 (transmembrane protein 237).

GO:

id name namespace
GO:0030111 regulation of Wnt signaling pathway biological_process
GO:0030030 cell projection organization biological_process
GO:0060271 cilium assembly biological_process
GO:0060027 convergent extension involved in gastrulation biological_process
GO:0042995 cell projection cellular_component
GO:0035869 ciliary transition zone cellular_component
GO:0005929 cilium cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040912-63 Acts upstream of or within convergent extension involved in gastrulation. Predicted to be located in cilium and membrane. Predicted to be integral component of membrane. Predicted to be active in ciliary transition zone. Is expressed in central nervous system; pectoral fin bud; pharyngeal arch 3-7; and visual system. Human ortholog(s) of this gene implicated in Joubert syndrome and Joubert syndrome 14. Orthologous to human TMEM237 (transmembrane protein 237).

Ensembl:

ensembl_id ENSDARG00000074248

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00062403 False 1466 mRNA 0.48 14 9898683 9916534
TCONS_00062404 False 739 processed_transcript 0.51 8 9901124 9908762
TCONS_00062405 True 505 lncRNA 0.49 4 9903274 9907292

Neighbor

gene id symbol gene type direction distance location
XLOC_031863 pimr74 coding upstream 3794 9893554 ~ 9894889 (+)
XLOC_031862 mpp4l coding upstream 11861 9867426 ~ 9886822 (+)
XLOC_031861 als2b coding upstream 37492 9793495 ~ 9861191 (+)
XLOC_031860 sumo1 coding upstream 210172 9677420 ~ 9688511 (+)
XLOC_031858 NA coding upstream 232085 9651251 ~ 9666598 (+)
XLOC_031865 cyp20a1 coding downstream 36144 9952678 ~ 9969458 (+)
XLOC_031866 abi2b coding downstream 54199 9970733 ~ 10010348 (+)
XLOC_031867 NA coding downstream 95727 10012261 ~ 10013022 (+)
XLOC_031868 NA coding downstream 108116 10024650 ~ 10036969 (+)
XLOC_031869 sucla2 coding downstream 120718 10037252 ~ 10056640 (+)
XLOC_031857 NA non-coding upstream 359391 9537670 ~ 9539292 (+)
XLOC_031851 NA non-coding upstream 725577 9163007 ~ 9173106 (+)
XLOC_031845 CR954285.2 non-coding upstream 900687 8705149 ~ 8997996 (+)
XLOC_031872 NA non-coding downstream 259323 10175857 ~ 10184750 (+)
XLOC_031874 NA non-coding downstream 460489 10377023 ~ 10398536 (+)
XLOC_031875 NA non-coding downstream 515217 10431751 ~ 10432077 (+)

Expression


Co-expression Network