XLOC_031893 (senp2)


Basic Information

Item Value
gene id XLOC_031893
gene name senp2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 11397269 ~ 11415635 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00062445
GTGACGCCCAGTGCCGCCTGTGATTGGTTGCCCGATTTGCCTTCACAAGATGAAAAAGTTCTAAATCGGCGTACATAGAGTGGAATTTAAATGGATAAAATGTAAGTaattaaagtgtgtgtttttatttagcttgtgccattttaataataacttttCGAAAAGACAAACTCCCTAGCGCTAAACCGTGGTGTAAAGGAACTTTAATCTCCGGGCGGAGTGCAGAGTGGGAGGGCTTGACCGATAAACAGTGCCATGGTGTCGCAGTTGACAAATCAGTGACGCAGAGCACGGCTACGGAAGGCTATTGAAACACGAGTGGCTTGAATTTTCGGTTGCGGGATCTCCACTATAGACCTGGCCCCAACAAACGAAACAGAGTCTTATTCTTCGTGGTGGTTTGTAATGTATGAATGGATAGCTGACGTATTATCGTCGCTGTTCCTGCCTCTTTCTGCTGAGAAATCCGAAGACTGGCCTAGTGAGCGCGCAAACGGTAAAGCGCGAGCCGCGGCCACAGACACTCAGCGGCAGGAGAACAGCAGGCCCGCCAAACGCAACTATCAGAGCGTCTACTCCACTGATGGGGTGTCAGAATACCCAGAAGTCAAAAGAGCAAGACAtgATGTGATTGTCAGGGTGGTCAAGAAAACTTTTGCTGGAATTGCTGGCCTGTTCCGTTCGAGAGTCCATAGAAAAGCTGAACATGAAAAGCAGAATGCCTTCACGCAGGTTGGCAGGGTTACATTTATGGGTATTGATGACATATACAGCAACAGCCTGAGTTCATGGATTGAAAGTGACGGCATGGATAAACAAATGGAAATGGgacttaaaaataaagaaagaacagCAGCCAATATGCAAACCAATCCACAGGCTTTACGCAAACCTGATGGAACAATGCTGTACAAAACAAATCAGGACAGAAGCAGAGAGATGCGCAGATCCTTGAAGCTTGTGCCGTCATGCACCACCAATGGGCTAAATTCAAGACAGGCTGAGATGGAGCTCCCAAGCCGCACACCCAAACCTTGCCTGACCGTGGAGGAGGCATTGAGAGAGAGTGATCGAGAGCATTATAGGAAGCTAGTGGAGATGGCAtctgaaaaatattcaaagagcAAACCATTGCCGTTTGGACGGATAAAGCCTTCCATCACCGCTTTCCCCATTGATGGACACAAGGTCAGTGGACACACCTCCATCTGTCGCACTACTGACTTGAACAGACCTGCGCCAGTAAGAGTCATCCCTAACATTTCTATGTGGCGGGATCCACTATCCCTGACGCAGATTAAAGACAGAACAGTGGATGGTCATCGAAGCACAACAGGAAGTGATGTCAAGGAAGGAGCCTTGGATAATCAAACTACACGAAAAACCGCTGTAGATGTTGATCTGTCAGCTGAGGTTGAAGCCAGGTTAAATCTGAAGGACAAGGATTCTGCTGTTGGACTTCTGATACCTTCCAGATCTGAAGTGATTACAGATGCAGTGAGGCGTGGTGAAGAGGAGTTTCCCAGACTGACCAAGGAGATGCAGCAGGAAGTGAGTGCTGCTCTTGCTCAGAGTGATCCAAACCTGGTTTTGTGCAGTGCTTTCAAACTGCGTATCACACAGAGAGATCTGGCAACACTACAAGAGGGCAGCTGGCTCAATGATGAGGTGATCAATTTCTACATGAATCTTGTGATGGCCCGCAGTGAGCAGGAAGTATTAGGCAAGAAGGTCTACTCTTTTAGTACCTTCCTCTTTCCCAAGTTGCTTAGCGGTGGACATGCTGCCGTACGGCGATGGACGAAGGCTGTAGACCTCTTTCTGTTTGACGTCATTCTGGTCCCTCTTCACCTGGGCGTTCACTGGTCTCTCGCTGTGGTTGACTTCAAATCAAAGTCTGTGCGATCATATGACTCCATGGGTCAACGGCATGATGACATCTGCGACTTAATTCTACTTTATCTGAAAGAGGAGTTCAAGGTCAAGAAGGGAAAAGATTTGGATGTGTCCAAGTGGATTGTGAGCAGTCTCCGGCCTTCTGAGATTCCTCAGCAGAAGAACGGCAGTGATTGTGGCGTGTTTATATGCAAATATGCTGATTATATCTCAAGAGGACGCAACCTCACTTTCAGACAGAATCACATGCCATATTTCAGGAAAGCTATGATCTGGGAGATCCTCAATCAAAAGCTGCTGCAGTAGGAGTGGCTGGGAATGCCGTAATGACTGAATCTGTTTGACCAAAGCACAGGACCACCATACATCTGTCCCTCCTGCTCTTTTTCTAGAGACATTTGGCTTTACATTGGCCTGGTGCAAAATCCCATGCGATTCTTTTAACAGAGGGTGGATTGCAGATTCCAGACTGGGTTTGTTTTGCACAATTAACCAACCCTTACTCTAATAAACACTAAAAGCGCAAATATGAGTCGAGGAGCAAAAACACTGGACTGGGTGTGAATGGATTTGAGCAGCCTAAAGCCTCATTAACCGTTGTTTTGAGGCCAGAACCGTTTTCATTCCAAGAATGTAGTCTTATCGCCTCTCTACTGGTTCTACTGTTCACAGACGTAGCTGTTGATGTGTAGTTATGCTAGGCgggaaataaatattttcattaagCTTACCTAGTGTGGGAATGTTTTAGCATATCTCTCTTAAGTCATGTTTGGTTTAATAAGGActgataaacatatttatttagtttggatGATATGCGGTGATGTCAGCCTTGATATGTCAAGACTTGTGTGTTTTAAAACCCACCATTAGTCTCAGAGCATCTTGGGTTTAACGTGCATGGCGGTGATGTTACTTGCACCGAAAGCAACAGTATTGAATGGATCTGTTTTGAGTTGTCTCTAAATAGTCCTGGCCTCCAAGTGCCTTGTTTTGAGAGCGTCTCCCATTTTACAGTCGTGAAATATAATGGCTTCTGTTTCTGCAGCATCCAATatgcttttttttgtaattttctgtgtgtgtgtaagcaacAGAGATTACCGTAAAGCAGGAGTTGGATGTTTGGCTCATGAATGGATTGGTCTTGCTATATTCATCATGCCATTGGCTGTATTTGACATACTTGTCAAACTGGAATTGTGGAGCAGTATAGTTGTGCCAAACTGACTTTTCAGTGGTTAACTGACTGGAGTattccccccctctctctctcatccAAGTAATAATACAGGATCAAAAAGTGCTTTAATTCTGACTTGaagtgaaaaagaagaaaaaaggtctatatttatttgtttctgtgTGGCTCTTGTGATTTAGTTTGGGCCCGAGTGCATGTCCTTAAGTGGGATTGTTTGTGAGAATGGAGAGTGTTTGGATTGGAGTTCTGATGCAAGCTTTAATATGGACAAAAAAGAAAAGGCCCACTGCATATGAGCTGTTTTTGTCATTAATGCAGAATGTTggtcattatttttttaagtaataaagaTGTGAAAAAGAAA
>TCONS_00062446
GAAACAGAGTCTTATTCTTCGTGGTGGTTTGTAATGTATGAATGGATAGCTGACGTATTATCGTCGCTGTTCCTGCCTCTTTCTGCTGAGAAATCCGAAGACTGGCCTAGTGAGCGCGCAAACGGTAAAGCGCGAGCCGCGGCCACAGACACTCAGCGGCAGGAGAACAGCAGGCCCGCCAAACGCAACTATCAGAGCGTCTACTCCACTGATGGGGTGTCAGAATACCCAGAAGTCAAAAGAGCAAGACAtgATGTGATTGTCAGGGTGGTCAAGAAAACTTTTGCTGGAATTGCTGGCCTGTTCCGTTCGAGAGTCCATAGAAAAGCTGAACATGAAAAGCAGAATGCCTTCACGCAGGTTGGCAGGGTTACATTTATGGGTATTGATGACATATACAGCAACAGCCTGAGTTCATGGATTGAAAGTGACGGCATGGTGGAACAATGCTGTACAAAACAAATCAGGACAGAAGCAGAGAGATGCGCAGATCCTTGAAGCTTGTGCCGTCATGCACCACCAATGGGCTAAATTCAAGACAGGCTGAGATGGAGCTCCCAAGCCGCACACCCAAACCTTGCCTGACCGTGGAGGAGGCATTGAGAGAGAGTGATCGAGAGCATTATAGGAAGCTAGTGGAGATGGCAtctgaaaaatattcaaagagcAAACCATTGCCGTTTGGACGGATAAAGCCTTCCATCACCGCTTTCCCCATTGATGGACACAAGGTCAGTGGACACACCTCCATCTGTCGCACTACTGACTTGAACAGACCTGCGCCAGTAAGAGTCATCCCTAACATTTCTATGTGGCGGGATCCACTATCCCTGACGCAGAT
>TCONS_00062447
TATTCTTCGTGGTGGTTTGTAATGTATGAATGGATAGCTGACGTATTATCGTCGCTGTTCCTGCCTCTTTCTGCTGAGAAATCCGAAGACTGGCCTAGTGAGCGCGCAAACGGTAAAGCGCGAGCCGCGGCCACAGACACTCAGCGGCAGGAGAACAGCAGGCCCGCCAAACGCAACTATCAGAGCGTCTACTCCACTGATGGGGTGTCAGAATACCCAGAAGTCAAAAGAGCAAGACAtggtaaatgttttaaatataaataaaaatggaaatgCACAATGTTGGAAAATCTGTAATATACTGCTGTAGATGTTGTGATATGGaaaatagggatgtaacgattcacctgacTCCTGATTCACGATACTAATCTCACGATTTAGTCacgattttttaacaaaataattttaaacaaatttaaggtgaagagcctttttatttttttcttaaatgctgcacattttttgcaaaataatatatattttttgccatAACTATATTGCTATTTTAGAATCaaattccaaaaataaaaaaataaaagaataatactAACTAAAGAAGAAGACTcgttaataaaaacaaactaaagctGTGACTGCTgggattttacatttaaataaaaa

Function

symbol description
senp2 Predicted to enable cysteine-type peptidase activity. Predicted to be involved in protein desumoylation. Predicted to act upstream of or within proteolysis. Predicted to be active in nucleus. Orthologous to human SENP2 (SUMO specific peptidase 2).

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0016926 protein desumoylation biological_process
GO:0005634 nucleus cellular_component
GO:0008234 cysteine-type peptidase activity molecular_function
GO:0016929 SUMO-specific protease activity molecular_function

KEGG:

id description
ko03013 Nucleocytoplasmic transport
ko04310 Wnt signaling pathway
ko01002 Peptidases and inhibitors
ko03019 Messenger RNA biogenesis
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-060810-183 Predicted to enable cysteine-type peptidase activity. Predicted to be involved in protein desumoylation. Predicted to act upstream of or within proteolysis. Predicted to be active in nucleus. Orthologous to human SENP2 (SUMO specific peptidase 2).

Ensembl:

ensembl_id ENSDARG00000073837

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00062445 False 3467 mRNA 0.44 17 11397269 11415635
TCONS_00062446 False 841 nonsense_mediated_decay 0.49 8 11397641 11408137
TCONS_00062447 True 624 lncRNA 0.36 2 11397653 11398744

Neighbor

gene id symbol gene type direction distance location
XLOC_031892 zgc:112416 coding upstream 840 11369135 ~ 11396429 (+)
XLOC_031891 atg9a coding upstream 130267 11249706 ~ 11267002 (+)
XLOC_031890 abcc6a coding upstream 329274 11026354 ~ 11067995 (+)
XLOC_031889 BX548046.3 coding upstream 378737 11018416 ~ 11018532 (+)
XLOC_031888 NA coding upstream 388839 10988645 ~ 11008430 (+)
XLOC_031894 col5a2b coding downstream 23337 11438972 ~ 11495601 (+)
XLOC_031895 calcrlb coding downstream 265091 11680726 ~ 11704680 (+)
XLOC_031896 zswim2 coding downstream 345114 11760749 ~ 11764338 (+)
XLOC_031897 AL929243.2 coding downstream 358982 11774617 ~ 11774732 (+)
XLOC_031898 baz2ba coding downstream 414232 11829867 ~ 12002935 (+)
XLOC_031887 NA non-coding upstream 466179 10930890 ~ 10931090 (+)
XLOC_031885 NA non-coding upstream 507045 10889061 ~ 10890224 (+)
XLOC_031883 dre-mir-10d non-coding upstream 530128 10867024 ~ 10867141 (+)
XLOC_031915 NA non-coding downstream 1844447 13260082 ~ 13267143 (+)
XLOC_031917 NA non-coding downstream 1929040 13344675 ~ 13348236 (+)
XLOC_031925 dre-mir-153b non-coding downstream 2565310 13980945 ~ 13981092 (+)
XLOC_031933 NA non-coding downstream 3890130 15305765 ~ 15308585 (+)

Expression


Co-expression Network