XLOC_031907 (si:ch73-71c20.5)


Basic Information

Item Value
gene id XLOC_031907
gene name si:ch73-71c20.5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 12986853 ~ 12993502 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00062475
GGTCTTCCTCACACAACAAAGATGGCGGCGCGCTGTTGGAGCCTGATGAGGTCGACATTGCAAGGGTTGTATCAGCTGTCAAACAGGACGTTGTGGCGAGAATCTCACTTGGAGCAGAGAGTTTGTCTCAGACTGCAGgagaatgttttacacagcagagccTTACATTACGGACATCATACTTTACAAACCATCACCAAGACGGAGCCTCCAAGAGTTATGAACACACAGAAATCAGCTGAACctgaaaataaaaccaaccaacaaaagaaagaagaggaagaggaggaggaggaagaagataACAGGCCTGAATATATGCCCAAAGGAAAGGCCAAAAATCCCATGATGAAGATTGGATATGCATGGATGATTGGCCTGCCTTCTGGGATCATTGGCTTTATTCTGGCAAAGAGACAAGTGGACAAGAACCGACTGAAACAGCTGAAAATCCGACAGAGGATGAAGAGAGCCAACGAGGGAGATTATGAAACAAACCGATATAAAGCAGCCACCGGGATGGAGTAAAGCTTGATTTCTGTAAAAGACAAATGGCTTCATTGGGCACTTATGATTGGGTTGCCATGGAAACCGTGAACTGCGTATATAAGTACATTCTAGAAAGCAGGCATTTATTACGGCGGACCTGTTGATCTAATGATTGTGGAGCTGAAGACTTTGGTTTTGGGGTTTGCGACAAATAAATGAAGCGTAAATGAAGTACTTAATTGAATTAAGGATTTCAGTGTTGCCTGTTAGACATTGTGTACACATTTCGAAGCAACTGCAAGGGGGAAAATACagaaaaactgaattaaaaatctattaaataacc
>TCONS_00062477
GGTCTTCCTCACACAACAAAGATGGCGGCGCGCTGTTGGAGCCTGATGAGGTCGACATTGCAAGgctgCAAGTCCGCTGGAGTTATACGATTGAGAGTTCCCATGTTCCCAGACATATTGACCAAGAAAAtatcaacttttcattttccattggtCTTAGTGCATGGTGTAACTAAAGGAGCGTcgagctttaaataagaaaaatatcaaaactctcTGTTGAAATTTGAGCGAGATGcttatggtctaatccaattccaATATTTATGCCAAGCTTAAGACCCGGAGATCGACTGAATgggaaaaaaaaagGGTTGTATCAGCTGTCAAACAGGACGTTGTGGCGAGAATCTCACTTGGAGCAGAGAGTTTGTCTCAGACTGCAGgagaatgttttacacagcagagccTTACATTACGGACATCATACTTTACAAACCATCACCAAGACGGAGCCTCCAAGAGTTATGAACACACAGAAATCAGCTGAACctgaaaataaaaccaaccaacaaaagaaagaagaggaagaggaggaggaggaagaagataACAGGCCTGAATATATGCCCAAAGGAAAGGCCAAAAATCCCATGATGAAGATTGGATATGCATGGTTAGTATAGCTCATATCTGCCTTCTGCTTCAGACAACAAAAGCAGGGAAACGACAGTGCTGAAAATCTAGAGATGCAGTCAGATTCAGAGATTAACCTTTCTATCAAGGGATGATTGGCCTGCCTTCTGGGATCATTGGCTTTATTCTGGCAAAGAGACAAGTGGACAAGAACCGACTGAAACAGCTGAAAATCCGACAGAGGATGAAGAGAGCCAACGAGGGAGATTATGAAACAAACCGATATAAAGCAGCCACCGGGATGGAGTAAAGCTTGATTTCTGTAAAAGACAAATGGCTTCATTGGGCACTTATGATTGGGTTGCCATGGAAACCGTGAACTGCGTATATAAGTACATTCTAGAAAGCAGGCATTTATTACGGCGGACCTGTTGATCTAATGATTGTGGAGCTGAAGACTTTGGTTTTGGGGTTTGCGACAAATAAATGAAGCGTAAATGAAGTACTTAATTGAATTAAGGATTTCAGTGTTGCCTGTTAGACATTGTGTACACATTTCGAAGCAACTGCAAGGGGGAAAATACagaaaaactgaattaaaaatctattaaataaccGAA
>TCONS_00062476
CTTCCTCACACAACAAAGATGGCGGCGCGCTGTTGGAGCCTGATGAGGTCGACATTGCAAGGGTTGTATCAGCTGTCAAACAGGACGTTGTGGCGAGAATCTCACTTGGAGCAGAGAGTTTGTCTCAGACTGCAGgagaatgttttacacagcagagccTTACATTACGGACATCATACTTTACAAACCATCACCAAGACGGAGCCTCCAAGAGTTATGAACACACAGAAATCAGCTGAACctgaaaataaaaccaaccaacaaaagaaagaagaggaagaggaggaggaggaagaagataACAGGCCTGAATATATGCCCAAAGGAAAGGCCAAAAATCCCATGATGAAGATTGGATATGCATGGTTAGTATAGCTCATATCTGCCTTCTGCTTCAGACAACAAAAGCAGGGAAACGACAGTGCTGAAAATCTAGAGATGCAGTCAGATTCAGAGATTAACCTTTCTATCAAGGGTCAGTATTTGCTCCTGTAATTAGATACTATTATTGCTTTACTATAATTAAATCATAATGTGTTATCTATTGTTAAATATTATCATTacctaaaaaaaaactacataattattaaaatgacaatactgtaaactttataacaaacatttttaaagaaactcatTATAGTGTAGGGCTGCATTATTatgataaaaacattatttactatTCCTGaggaaattaattttaattgttaatgtttataataatgatatatgtaaaatattttttatctttg

Function

symbol description
si:ch73-71c20.5 Predicted to be located in membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060810-58 Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000097696

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00062475 False 835 mRNA 0.43 3 12986853 12993499
TCONS_00062477 False 1196 lncRNA 0.42 4 12986853 12993502
TCONS_00062476 True 752 lncRNA 0.35 2 12986856 12990694

Neighbor

gene id symbol gene type direction distance location
XLOC_031906 mcm6 coding upstream 1463 12968101 ~ 12985390 (+)
XLOC_031905 cxcr4a coding upstream 63126 12922002 ~ 12923727 (+)
XLOC_031904 fam117ba coding upstream 121026 12853655 ~ 12865827 (+)
XLOC_031903 stk24b coding upstream 435494 12482599 ~ 12551359 (+)
XLOC_031902 nr4a2b coding upstream 520303 12462079 ~ 12466550 (+)
XLOC_031908 pnkd coding downstream 30946 13024448 ~ 13037815 (+)
XLOC_031909 catip coding downstream 46449 13039951 ~ 13045541 (+)
XLOC_031910 casp8 coding downstream 52383 13045885 ~ 13058979 (+)
XLOC_031911 l3hypdh coding downstream 89644 13083146 ~ 13091856 (+)
XLOC_031912 dytn coding downstream 103410 13096912 ~ 13133917 (+)
XLOC_031897 AL929243.2 non-coding upstream 1212121 11774617 ~ 11774732 (+)
XLOC_031889 BX548046.3 non-coding upstream 1968321 11018416 ~ 11018532 (+)
XLOC_031888 NA non-coding upstream 1978423 10988645 ~ 11008430 (+)
XLOC_031887 NA non-coding upstream 2055763 10930890 ~ 10931090 (+)
XLOC_031885 NA non-coding upstream 2096629 10889061 ~ 10890224 (+)
XLOC_031915 NA non-coding downstream 266580 13260082 ~ 13267143 (+)
XLOC_031917 NA non-coding downstream 351173 13344675 ~ 13348236 (+)
XLOC_031925 dre-mir-153b non-coding downstream 987443 13980945 ~ 13981092 (+)
XLOC_031933 NA non-coding downstream 2312263 15305765 ~ 15308585 (+)
XLOC_031935 CR956630.1 non-coding downstream 2550553 15544055 ~ 15544170 (+)

Expression


Co-expression Network