XLOC_031909 (catip)


Basic Information

Item Value
gene id XLOC_031909
gene name catip
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 13039951 ~ 13045541 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00062480
AGGAAACCAAAGATGCTAATAAGTTCGAGGCATGATCGACAAAACACACAAACGATAAATAAAGACGTTTATATGCCCTAATTTTGACGCTGATTTTTGTAACGCATTTTTGAAGCTGCAGTTTCATGATATTCTGTTTTTATTAGCATTAGCGAAGCAAAATAGCGTGTTGAAGCCTGTTGAAGGATAAGCTGTTAAAACCAGTACGATCCAGGAGTTTTTAAGACATGGAGGAAAGTGAATTAACTCAGAATGAAACAGAAGAGCTAAAAGCTTCAGTCAGTGCAGTGGAGTTTATTCACATTGCACAGAGGGATCTGGAGCAGTGTTTGTTTGCAGACTCACTTGTGACCGTGTCTGATTCAGGCAGAGAACTGGGAGATTTCTCTGTAAGTGTTACTAAAGCGAGCTACAATGAGGAGCTTTGCTATCTGCTCCATGCCAATAGTCACGGAACTATCGATGACGTCCCTTGTGGCACATCCATCGTAGCCTATATATCCAGAAAGCTCGAGATACTGGAAGAGAATCATCATGAATATGTAAAGCTGGAAAAGAAAACGGTGGACCGGAAGATTCATATTGTTAGACAAGATGATCAACTAGTGGTTGACCGAGTCATCTCAGAGAGAGAGGGAGTGAAAACACAAACCCTCAAATTCCCATTGAGCTCTCTAGATGGCTTTGTGTCTGAGGCATCCAACTTCCTCCTCCTGCGCATAATGGCTCGACAGAAGATTGTTCCGGAAAACATGACATTCCTGTCATTAGATGCAGATTCTGGGCTTTCTAAGTCAGTTTATAAAGCACTTGGGTGGCAGAAGCAGATGGTTGGGGAAGATTTAGTCGATATCTTTGGGATTGAAAGGACCATCTACTCTGCAAATCTCTCCTCAGCAACCTGGCATTGCTTCTTCATGCCTGATGGGCATCTTGCAAGCAGAGTGCAGTTGGGCTCACCTGCAGTGATGAAGTTACTGCATTTGCCTTTCTTACTGGATGGAGtgattaaaacttttttttttctagtggaGAAGGACAAGATTCCTGTGATGGAGAAGAAGCCACTCATATGGGAGGAAGATATGGAGCTTTATTCAAAGTTTCTTGACAGAAAGGAAGAGCTCAAAGCAGATTACTCCTCATACCTCAGACAACACCCTGAGCTGAAGGCTTTACTGGCGGACTTCCTGCAGTTTCTGCTGTTGAGAAAACCTCAAGATGTCTTCTCTTTTGCTCGTGACTTTTTTGCACCTTTTGCCTCTCAAAGTCCTCCTGGAAAATCCCAGGAGTTCTGAAACATTCGATTTTTAAATGCTAACCATGATTTGTCTGATGTTATCCAGGACAGAAAATAAAGGTTTTCTTCTAATGGCG
>TCONS_00062481
CAAAACACACAAACGATAAATAAAGACGTTTATATGCCCTAATTTTGACGCTGATTTTTGTAACGCATTTTTGAAGCTGCAGTTTCATGATATTCTGTTTTTATTAGCATTAGCGAAGCAAAATAGCGTGTTGAAGCCTGTTGAAGGATAAGCTGTTAAAACCAGTACGATCCAGGAGTTTTTAAGACATGGAGGAAAGTGAATTAACTCAGAATGAAACAGAAGAGCTAAAAGCTTCAGTCAGTGCAGTGGAGTTTATTCACATTGGCATCTTGCAAGCAGAGTGCAGTTGGGCTCACCTGCAGTGATGAAGTTACTGCATTTGCCTTTCTTACTGGATGGAGtggaGAAGGACAAGATTCCTGTGATGGAGAAGAAGCCACTCATATGGGAGGAAGATATGGAGCTTTATTCAAAGTTTCTTGACAGAAAGGAAGAGCTCAAAGCAGATTACTCCTCATACCTCAGACAACACCCTGAGCTGAAGGCTTTACTGGCGGACTTCCTGCAGTTTCTGCTGTTGAGAAAACCTCAAGATGTCTTCTCTTTTGCTCGTGACTTTTTTGCACCTTTTGCCTCTCAAAGTCCTCCTGGAAAATCCCAGGAGTTCTGAAACATTCGATTTTTAAATGCTAACCATGATTTGTCTGAT

Function

symbol description
catip Involved in actin filament polymerization and cilium organization. Acts upstream of or within cilium assembly and determination of heart left/right asymmetry. Predicted to be located in several cellular components, including actin cytoskeleton; nucleus; and plasma membrane. Is expressed in caudal fin; nervous system; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in spermatogenic failure. Orthologous to human CATIP (ciliogenesis associated TTC17 interacting protein).

GO:

id name namespace
GO:0044782 cilium organization biological_process
GO:0030030 cell projection organization biological_process
GO:0060271 cilium assembly biological_process
GO:0030041 actin filament polymerization biological_process
GO:0061371 determination of heart left/right asymmetry biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005886 plasma membrane cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0005634 nucleus cellular_component
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-060929-1170 Involved in actin filament polymerization and cilium organization. Acts upstream of or within cilium assembly and determination of heart left/right asymmetry. Predicted to be located in several cellular components, including actin cytoskeleton; nucleus; and plasma membrane. Is expressed in caudal fin; nervous system; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in spermatogenic failure. Orthologous to human CATIP (ciliogenesis associated TTC17 interacting protein).

Ensembl:

ensembl_id ENSDARG00000063009

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00062480 False 1377 mRNA 0.42 10 13039951 13045541
TCONS_00062481 True 652 nonsense_mediated_decay 0.41 5 13039990 13045501

Neighbor

gene id symbol gene type direction distance location
XLOC_031908 pnkd coding upstream 2136 13024448 ~ 13037815 (+)
XLOC_031907 si:ch73-71c20.5 coding upstream 46449 12986853 ~ 12993502 (+)
XLOC_031906 mcm6 coding upstream 54561 12968101 ~ 12985390 (+)
XLOC_031905 cxcr4a coding upstream 116224 12922002 ~ 12923727 (+)
XLOC_031904 fam117ba coding upstream 174124 12853655 ~ 12865827 (+)
XLOC_031910 casp8 coding downstream 344 13045885 ~ 13058979 (+)
XLOC_031911 l3hypdh coding downstream 37605 13083146 ~ 13091856 (+)
XLOC_031912 dytn coding downstream 51371 13096912 ~ 13133917 (+)
XLOC_031913 CT009620.1 coding downstream 155817 13201358 ~ 13204969 (+)
XLOC_031914 ndufs1 coding downstream 160975 13206516 ~ 13254851 (+)
XLOC_031897 AL929243.2 non-coding upstream 1265219 11774617 ~ 11774732 (+)
XLOC_031889 BX548046.3 non-coding upstream 2021419 11018416 ~ 11018532 (+)
XLOC_031888 NA non-coding upstream 2031521 10988645 ~ 11008430 (+)
XLOC_031887 NA non-coding upstream 2108861 10930890 ~ 10931090 (+)
XLOC_031885 NA non-coding upstream 2149727 10889061 ~ 10890224 (+)
XLOC_031915 NA non-coding downstream 214541 13260082 ~ 13267143 (+)
XLOC_031917 NA non-coding downstream 299134 13344675 ~ 13348236 (+)
XLOC_031925 dre-mir-153b non-coding downstream 935404 13980945 ~ 13981092 (+)
XLOC_031933 NA non-coding downstream 2260224 15305765 ~ 15308585 (+)
XLOC_031935 CR956630.1 non-coding downstream 2498514 15544055 ~ 15544170 (+)

Expression


Co-expression Network