XLOC_031912 (dytn)


Basic Information

Item Value
gene id XLOC_031912
gene name dytn
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 13096912 ~ 13133917 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00062485
TATTCCATGTCAAATCGACCTCTTGGATATTGTTTGATCATCAACAATTATAAATTTGAAAGTGCATCACTTGCAGACCGGAGAGGGACTGATAGAGATAAAGACGATCTCACCAAAGTCTTTGAGAAAATGTATTTCAAAGTTGAAGTGCGGGACGATTTACAAGCCTCAGACATGCGAAATGTGATAAAAGAATTTGCAGAGAAGGATCACTCTCAGATGAATGCTTTTGTCTGCTGCATCCTCACCCATGGAGAGAAAGGCACTGTTCTGGGAACAGACGGAAAACAAGTTCCGATTCGTGAACTCTCACAGCCGTTTGCTGAATGCCGTTCTCTAGCCAGTAAACCCAAACTGTTCTTCATTCAGGCCTGTCAGGGCAATATGAGACAGCAAGGTTTGTGGATGGCACATGAGCGGGAGAACACCACAGAAGAGGAAGCATATGAGGAGGATGCTCATGCTGCAGGGAATTACAGTATCCCTATGGATGCAGATTTCCTCTTTGCTATTGCAACGGTGGAGCATTTTAGATCCTACCGCCACATTACAAATGGGTCCATCTTTATTCAGGTGCTCTGCAAGCAGCTGGAAAGGGGCTGTGCACAGAAAAAGGACATACTCTCAATTTTAACCGCGGTAAATGGAGTAGTGGGCTCCAAAATTCTACAGGGTTACAAGCAGATGCCTGAGCATgaagtagccatcagaagaaggttactgttgccatTAATAAACAAC
>TCONS_00062486
GCACAACATACATCACACTTATACAAGTCGTTTGCAAACATCGACATCTGAAATGATCCATAAGTGTAAATTAGACGTGTAGAATGGATGTAATACTTACGTAGAATTCAAATGGGAGTTTGCCTCGCAAAACTGGTCGCGTTTATGCGAGCAGCAGACTGTTATGGATTTGGATAACATTGaaggTCTGAATGAGGTTCGTCTTGCAGTTTACAGAGCTGCTCTAAAGCTTCGATCATTGCAAAAACTATGTCAGAtgaatCTGGTGTTACTGCAGGATTTGCGTCCAATTTTGAACACTTTATGGAGTTCTGGGGAATCAACGATAAGCCTTGCTCAAGAAGATGTACAGCAGCATCTAGAAGAGCTATTCAGGAGTATCTCCCCTGAACTTCCTGATCAGGCGGTTACTGAAGCCACAGATCAGACCACCAGGCTTCTCTTTAAACTGTTTGACAGAGGGCAAACTGGAGTTATTCTGCTGAGGTCAGTGGAGGCTGCGCTGATTGCCCTCTGTGGAGACACTCTCTCAGCTAAACAGAGGGCTCTGTTCAGACTGGCCGAGAGCTACAGTGGGAATCAGGAGAGCGATAGAGGCTCCATCAGTCGCAGTGCACTCAGAGTCCTGCT
>TCONS_00062487
ATTACTTTAAAAACCGAGTGTATACTGTAACCAAAACTCAAttccatttcattcattcattcatttaaacagTTTATGCGAGCAGCAGACTGTTATGGATTTGGATAACATTGgTCTGAATGAGGTTCGTCTTGCAGTTTACAGAGCTGCTCTAAAGCTTCGATCATTGCAAAAACTATGTCAGAtgaatCTGGTGTTACTGCAGGATTTGCGTCCAATTTTGAACACTTTATGGAGTTCTGGGGAATCAACGATAAGCCTTGCTCAAGAAGATGTACAGCAGCATCTAGAAGAGCTATTCAGGAGTATCTCCCCTGAACTTCCTGATCAGGCGGTTACTGAAGCCACAGATCAGACCACCAGGCTTCTCTTTAAACTGTTTGACAGAGGGCAAACTGGAGTTATTCTGCTGAGGTCAGTGGAGGCTGCGCTGATTGCCCTCTGTGGAGACACTCTCTCAGCTAAACAGAGGGGTTTGTTCCACATTTGTTTCATTTAAGTATCTCTTATTCTGATTCTGCTCTCAACTTTCTGGATGCTGCATGATCATGAGTGTTGAGAGCTTGTGTTTCTGCAGCTCTGTTCAGACTGGCCGAGAGCTACAGTGGGAATCAGGAGAGCGATAGAGGCTCCATCAGTCGCAGTGCACTCAGAGTCCTGCTGGAAGacctcagccagGTTCCGGCTGTGGTTCAAGAAAACCATGTTTTTGGTCATGCTGAAACTGCAGTGTCATCCTGCTTTAACGGGGTAATCAGTGCAGGTGTGACTGAAGAGCATTTTATATGGTGGCTGCAGTCAGAGCCGCGTCTCCTCTTATGGCTGTCCACACTCTACAGGATTTCAGTGAGTGAAGCTGTACAACACAGAGTTCACTGCCATGCCTGTAAAGCCTTTCCCATCACTGGCCTCAGGTGGGCATTTCCAGAGCATTTATCCTTAATGTGGGTTAAATAGCCTAAAGCATGTTGCATGGTTGATagaagtgtgtgtatataaaggTAGTAAAGCATTTGTAATGTGTATTTGTCAGGgataatatttttactatattttactttAGTATATTTTACTTTACTAATAAACAACAGTGAAATGAAAGTAAATTCAATccccaaaag
>TCONS_00062488
cattcatttaaacagTTTATGCGAGCAGCAGACTGTTATGGATTTGGATAACATTGaaggTCTGAATGAGGTTCGTCTTGCAGTTTACAGAGCTGCTCTAAAGCTTCGATCATTGCAAAAACTATGTCAGAtgaatCTGGTGTTACTGCAGGATTTGCGTCCAATTTTGAACACTTTATGGAGTTCTGGGGAATCAACGATAAGCCTTGCTCAAGAAGATGTACAGCAGCATCTAGAAGAGCTATTCAGGAGTATCTCCCCTGAACTTCCTGATCAGGCGGTTACTGAAGCCACAGATCAGACCACCAGGCTTCTCTTTAAACTGTTTGACAGAGGGCAAACTGGAGTTATTCTGCTGAGGTCAGTGGAGGCTGCGCTGATTGCCCTCTGTGGAGACACTCTCTCAGCTAAACAGAGGGCTCTGTTCAGACTGGCCGAGAGCTACAGTGGGAATCAGGAGAGCGATAGAGGCTCCATCAGTCGCAGTGCACTCAGAGTCCTGCTGGAAGacctcagccagGTTCCGGCTGTGGTTCAAGAAAACCATGTTTTTGGTCATGCTGAAACTGCAGTGTCATCCTGCTTTAACGGGGTAATCAGTGCAGGTGTGACTGAAGAGCATTTTATATGGTGGCTGCAGTCAGAGCCGCGTCTCCTCTTATGGCTGTCCACACTCTACAGGATTTCAGTGAGTGAAGCTGTACAACACAGAGTTCACTGCCATGCCTGTAAAGCCTTTCCCATCACTGGCCTCAGGTATCGCTGTCTGAAATGCCTGAATGTACACCTCTGCCAAAGCTGCTTTCTGACAGAGAGACGCAGCAGGAAACACAAGCCCTCCCATTCTGTGCTGGAGTACTGCACTCAGCCATCCTGGAAGGAGTCGATGGCATCACTGGCGTCCAGCGCTCGACATGCTTTAGTTCCTCGACACACCCGGAGGGAAGCAGAGAGGAAGAGAGCCTTGAGAGCAGGATCTAGTGCAGAGCTGCGATACAGtgccTCGAATCCAGCGCTGCAGTTTGCTGCATATGCAGACACACATGATGCTGCTGCTGAGGCAAGTCAGACTGCTGCTCCTGCTGCCGTTACAGTAGAGTCTAAAAGCCTGCAGACAGAAGAGATACAGATCCCTCAGAGAGAAACAGCTGAACTCCAGAAAGACATCAGTGTTACCCAGAAGGCCATGCGAGATCTGCAGAGGGATAAATGGCTCCTGGAGAAAGAGTTTCAGGTGTGGAGAGTCGCAGCTCAGTCAGAGCACGATTCATTAGAGGACAAATGCTCTGAGCTGAAGAGCATGATGGAGACGCTCAACCAACACAACCAGCATCTGGAGGAAGAACTGGACACAGTCAGACATTTGTTGAGTCTGAGGCACAAAGAAGAGCTCAAAACATCCCATTCAAACCTTCAACTAGAACAAGATGGCAGCATTAATGAAAACAACTGGACACAACCTGGACTTTTAAAGCCTCATGAAAGCTCCAGCACAGAACACGAAGTAGAGGAGAGAGGAACACGTCAGGAACGAAGGTTTGAAGAGGAGGAGGATACTCTGTATGATCTTTCAGAGGACATCTCCACTAATCTGGACGACTCAGAGAGTATTCTGCCGCAGGACGTCCATACAGCTTTAGCACAGCgagaagaggaggagctacaggaAGAGGAGGAGGGGCTACATGAGAAAGAGGAGGGGCTACCAAcagaagaggaggagctacaACATGACAGACAGGATCCTTCGTTTTTTCATGGATGCATGTCGGATTTTGCACCGGACGGACACTCGGATGATTCAGAGATGGACGATGAGGAGGATCTCTGCGAGCTTGTACAGAGACTTCGAAATGAGCTTTCTCTATATACAGCCTCAgGGTCAGTCTGTCTCCAGAAAGAAATGCTGATGACGGCAGCAGAGGGAGTCAGAGACTCCGTTTCTCATCTCGTCACTTCTGTAAAGAGCTCCAGTTTGGCATGATGGTGACAATCACAGCTTGCAAACAAACTGTGCCTCACATTTGCACTAATTACATTTACATGTCATTCATTATAATAAAGAGTTTGGAATTAAAGGATTAGTtcgccc

Function

symbol description
dytn Predicted to enable cysteine-type endopeptidase activity and zinc ion binding activity. Predicted to be involved in synaptic signaling. Predicted to act upstream of or within proteolysis. Predicted to be located in membrane. Predicted to be active in plasma membrane. Orthologous to human DYTN (dystrotelin).

GO:

id name namespace
GO:0099536 synaptic signaling biological_process
GO:0006508 proteolysis biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0004197 cysteine-type endopeptidase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070124-2 Predicted to enable cysteine-type endopeptidase activity and zinc ion binding activity. Predicted to be involved in synaptic signaling. Predicted to act upstream of or within proteolysis. Predicted to be located in membrane. Predicted to be active in plasma membrane. Orthologous to human DYTN (dystrotelin).

Ensembl:

ensembl_id ENSDARG00000071025

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00062485 False 741 mRNA 0.44 7 13096912 13123392
TCONS_00062486 False 630 mRNA 0.46 6 13117093 13121076
TCONS_00062487 False 1121 lncRNA 0.43 6 13117541 13123424
TCONS_00062488 True 2092 mRNA 0.49 14 13117598 13133917

Neighbor

gene id symbol gene type direction distance location
XLOC_031911 l3hypdh coding upstream 5056 13083146 ~ 13091856 (+)
XLOC_031910 casp8 coding upstream 37933 13045885 ~ 13058979 (+)
XLOC_031909 catip coding upstream 51371 13039951 ~ 13045541 (+)
XLOC_031908 pnkd coding upstream 59097 13024448 ~ 13037815 (+)
XLOC_031907 si:ch73-71c20.5 coding upstream 103410 12986853 ~ 12993502 (+)
XLOC_031913 CT009620.1 coding downstream 67441 13201358 ~ 13204969 (+)
XLOC_031914 ndufs1 coding downstream 72599 13206516 ~ 13254851 (+)
XLOC_031915 NA coding downstream 126165 13260082 ~ 13267143 (+)
XLOC_031916 rprmb coding downstream 199216 13333133 ~ 13334222 (+)
XLOC_031917 NA coding downstream 210758 13344675 ~ 13348236 (+)
XLOC_031897 AL929243.2 non-coding upstream 1322180 11774617 ~ 11774732 (+)
XLOC_031889 BX548046.3 non-coding upstream 2078380 11018416 ~ 11018532 (+)
XLOC_031888 NA non-coding upstream 2088482 10988645 ~ 11008430 (+)
XLOC_031887 NA non-coding upstream 2165822 10930890 ~ 10931090 (+)
XLOC_031885 NA non-coding upstream 2206688 10889061 ~ 10890224 (+)
XLOC_031925 dre-mir-153b non-coding downstream 847028 13980945 ~ 13981092 (+)
XLOC_031933 NA non-coding downstream 2171848 15305765 ~ 15308585 (+)
XLOC_031935 CR956630.1 non-coding downstream 2410138 15544055 ~ 15544170 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000024_01813434_01822004 DYTN coding CI01000024 null 1813406 ~ 1823279 (-)