XLOC_031915


Basic Information

Item Value
gene id XLOC_031915
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 13260082 ~ 13267143 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064820
CGGGGCTCTGGCGTTACCTAGCAACGGCTCCCATACTGTACTCCCGCTCCAAGTGCCTGCCTGGCTGCCTTCAACTCTGGCGCTGTTTCTATTTCTGTTGTAGCGTTGCAGTCGCCGTCTGCTAAAACATTCATAGCACAGTCCTCTTAGCATGTGCCTTCTGCGGTAATGTTTCAGTTTGAAGCACTACCCTACCCGACGCGCCGCAGAGTGATACTGACAAATGGCGCGTCAAATGATGGGTGACAGACCAGTTAATCATGGACTGCCGTCTCCGGGGACGCGCTGATTGAGTCTGATGTAATGGATGTTATTACGGCCAGTGACATGACAACTGCGACCTCGCACACGGACGTGTTTGCCACATAACTATTGTTGAAGCAGGTGCCGAAAAAATGCGATAAAGGCGGTTTCTCTCAacgtgtttttattatttaatttttttttgggtgaGGGGAGCGAGCAGAACTGAAAGGGAGGGAGAGGATAGAGAGACTGGCAGAGGGAAATGGCAGTTGCATAAACTGTCACAGTGATGAGATCTTATCATTATGGCTCCAGATATGCCAGGGCTGCTGTTAGGCCATGACAAGGTTTAACGCCCCCATGATTCCACATGAACAGCTTCTCCAAGCGCAATCGTTTAACAATAGACTGTTAAATTGGATGGATGATCTGCCACAAACTGTCTCAAGTGCATCACCCGGATACAACAAGCTGGTAAATGGCACACTTCAGCTGAAACACACCTTGGATGAGACAGCACGCTGTCCCTGCAGGGAACATCCACACAAATAGAGCATCCTGTTTTCTACCATTTGATGCTGCCCTCACGTCTGTCTAGCCCTTAAGCGAATATATATCTGTGGCAAATGCCATCCCATGCCAACCTCAAGAGTTACACAAGGAAAGTAGCTTAAGAGCCTATTTTTTGCCTTGttcaaatttaattaaactgtaaaatagCTTTTGTATTTTAGGTTGTATGGGTACTGGCAAAAAATTCTTACAATTTTAATATAGAGTTTTTTTGGAAAAAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064820 True 1040 lncRNA 0.46 2 13260082 13267143

Neighbor

gene id symbol gene type direction distance location
XLOC_031914 ndufs1 coding upstream 5231 13206516 ~ 13254851 (+)
XLOC_031913 CT009620.1 coding upstream 55113 13201358 ~ 13204969 (+)
XLOC_031912 dytn coding upstream 126165 13096912 ~ 13133917 (+)
XLOC_031911 l3hypdh coding upstream 168226 13083146 ~ 13091856 (+)
XLOC_031910 casp8 coding upstream 201103 13045885 ~ 13058979 (+)
XLOC_031916 rprmb coding downstream 65990 13333133 ~ 13334222 (+)
XLOC_031917 NA coding downstream 77532 13344675 ~ 13348236 (+)
XLOC_031918 gmppab coding downstream 239698 13506841 ~ 13514230 (+)
XLOC_031919 asic4b coding downstream 339267 13606410 ~ 13688991 (+)
XLOC_031920 wnt6a coding downstream 459701 13726844 ~ 13734490 (+)
XLOC_031897 AL929243.2 non-coding upstream 1485350 11774617 ~ 11774732 (+)
XLOC_031889 BX548046.3 non-coding upstream 2241550 11018416 ~ 11018532 (+)
XLOC_031888 NA non-coding upstream 2251652 10988645 ~ 11008430 (+)
XLOC_031887 NA non-coding upstream 2328992 10930890 ~ 10931090 (+)
XLOC_031885 NA non-coding upstream 2369858 10889061 ~ 10890224 (+)
XLOC_031925 dre-mir-153b non-coding downstream 713802 13980945 ~ 13981092 (+)
XLOC_031933 NA non-coding downstream 2038622 15305765 ~ 15308585 (+)
XLOC_031935 CR956630.1 non-coding downstream 2276912 15544055 ~ 15544170 (+)
XLOC_031937 CR759882.1 non-coding downstream 2628491 15895634 ~ 15902635 (+)

Expression


Co-expression Network