XLOC_031917


Basic Information

Item Value
gene id XLOC_031917
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 13344675 ~ 13348236 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064821
CAGAAAGGCGTGGGCTTAATATTTTATTCTGCTGAGTGATTACATGTCTCGCTGCCCTTTCATAAAACCGGCCTTGAGGGTGACAAGTAAAAAGGCATCATAGCAAATGCTTTCATATCGACTGGCACTCACACTCACGTCTGCTCTCTGCATTCTGAACTGCAGCCCTGAGGCTTCAACTGAGATCTTTAAAACACGCTCAAACAGCGAAACACGCGCAACCGCATGTGGAGGcttacttttttttcattttatataaaataatgcagGAGTGAAAGAATGCTAGAgtgaaataatgaaaattaagCATCAATAcagaaactttttatttaaaaaagtaaatacattcTGAAAACATTAATTCTCCTTGTGGTATTAATGCAACATTCCACATCTTGAGTAGACGATGAATATTCCAGTGTTGTTTTTCATCCCTGATTATTTAAATGGCAGGAAAAGAAGCAAGCAAACCATTCGACCTCTAAATCAGATGTTTTCAGGCAGAGCTGAATATTGTCTGACAGTTGCACCGCACCAAATGAAACCATACGAGACAGTTTATCTCAGACAGACCTTCACCTTAACAGAAACAGCATTAAGAGAGACACTTTCACAAAGtcaaagcaaaaactaaaaaagCAAGGCTGAAGAGCACAAACACGCAGCGTGTGATCCCGCATGCAGAGATATCTCCATTTTGTGTCGGTTTAAACAGAAGTTTCACAGGAGCACAAAAACTGTCAATAAAGTAAAAAAGTTGCATAAAATATAACGCTTAGCATTTTTGATTCGTTATGTAgagtgtccgcggggtcttaaaaagtattaaaacttgatacagtgcatccggaaagtattcatagcgcttcatttttccacattttttatgttacagccttattccaaaatggattaaattatttcctccaaattctacacacaatacctcataatgacaatgtaaaaaagattttttgaaattgttgcaaatttattaaaaataaaaaacctgaaaaatgggAGTCTGTTGCTCTAACATGCGGTTTAAAGACCATAACCCCAAGGTCCTGcctctagagcacctttagaggtcagagaagtgaggtttacctgcaaagcacttcactagctggcctctagTACACTGACTTGCTAAACCTCACTTTGATTCAGGTCACAGCACTAAcataaccccgccggtcctataccacccaacctgctctaaACTGGGATCGAAACGGTGACTTTCtgcatggaagtcggttgctctaacaaggaggctaaagaccatggcctctagcaacTGTTGCTAAAGCATCTTTAGAGGCCGGAGGAGTAAgatcaccccctaaacctcactcctatctgggtcacggcaccaatgtaacaccGCCAGTCCTataccacccaacctgctctaaactgggatcgaaccggcaactttccgcatgggagtcggttgctctaacaacgaagctaaagaccatggcctctagagtCTGTCGCTAAagcatctttagaggtcagaggagtgaggtttacctgcacagcatttcactaactggcctccgttacactcactcccatctgggtcaagGCACCAATGTAACCACGCCAGTTCTATACCACcaaacctgctccgagctggaatCGAAACCGTtactttccgcatgggagtcggttgctctaacaaggaagctaaagaccatgaggtttacctgcacagtactTCACAaactggcctccgttacacttaccTGCTAAACCTCACtaccatccgggtcatggcactcATTAACCCTGCCAGTCCTTAGAGCATCTTTAtatgtcagaggagtgaggtcaCCCCCCCTAAACCTCATTCCTATCCGGGTCAAGGCACCAATGTAACGCCGGCAATCCTataccacccaacccgctctgatcTGGGATCGAACCGGTGACTTTCCACATGGGAGTTGGTTGTTTAACAgggaggctaaagatcatggcTCCTACAATTGATGTCAGAATTGTcaattttgggttaactatccctttaaaaaaaaaaaaaaaaaactccttaaGGATGCACAAGGGATAAAATACCCAGATAATGTTGAAGCAACAGGTTTGAGTTGAATAAATTCTTAAAATGCTAAAATCTCTACAAACaaagttcattttttattttgtttttaaaatgtgctaATAATGGAGATGGAAATGTCatgtaaaagaaaacaaataattggACCTTGTTGCCACagatacaaataaacacacacacatagagaaatGGCAGTACATTAATAGTCCATATATACTAGACGGCCAAGTGCATTAGAGCTAGCTGAAATGAGTCGCTACAGGGCCTGCTAATctaatgaagaagaaaaaaaaaataatcatggcCTGGCAGAGTCTGCATCAAATAATTAAAGTCATAAATTAAATCCACACTTCTACACTCTCTGACCTTCTCTCAGGCTCTCAACAAAGCTCTTAAACACGGTCACTCTCCATCAAGCCCAAAACAGCTATTGTATTAATGATTTCCCCCATTAAAACGATCAATAGAGCAGCGACGTTGAGTTTTAATAAAGCACGAATGCAAGGGGACTTTAGTCTTTTGCTGAGAGGAGAttctacaatgcaaatccattttTAGAAAGATTTAAACATCATCCGTGTGCTTTCAGACTGACAATGAATGGCATCAAAAGGGCAAAAAGCAGATTTAACACACTGCTATTGTGATGGTAAAAAGAGGATTCTGCAATGAAAGCCTTTAGAAGAGAAAATAAGTAGCTAAAAAAGAGACCCTGACATCGCTAATGTTTTCCCCCCTAAATGTAGTCCATTAATTAATTCACTGTGCGTTTACTGAATTTGTAAAATtagcatttataaaaaatatgataaattctctcaaaaaaacaaaacattacgtAGTTTCATTCTGTATCTAAACACCTacaaaaatttaatgtaataaatgtttAAGCTAGTATTCcatacttgatttttttttttcagttttatctgTAGTTTTATCCGTAAAATTATTTGACATTTCCTTCTGCCATTAAACCTTAAATCGTCTTCTGATGACTGCGTGTTAAATGGCAGTTGAGGTGTCGTAGGATGTGCATCAGATGAGATACCATATAAGAGTGAGTGCAGCCACTATGCCGTTGAGTATAGCCATACTGTAGCCCATGTGGAAAGAGTGTCCGG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064821 True 3219 lncRNA 0.40 2 13344675 13348236

Neighbor

gene id symbol gene type direction distance location
XLOC_031916 rprmb coding upstream 10453 13333133 ~ 13334222 (+)
XLOC_031915 NA coding upstream 77532 13260082 ~ 13267143 (+)
XLOC_031914 ndufs1 coding upstream 89824 13206516 ~ 13254851 (+)
XLOC_031913 CT009620.1 coding upstream 139706 13201358 ~ 13204969 (+)
XLOC_031912 dytn coding upstream 210758 13096912 ~ 13133917 (+)
XLOC_031918 gmppab coding downstream 158605 13506841 ~ 13514230 (+)
XLOC_031919 asic4b coding downstream 258174 13606410 ~ 13688991 (+)
XLOC_031920 wnt6a coding downstream 378608 13726844 ~ 13734490 (+)
XLOC_031921 cdk5r2a coding downstream 394663 13742899 ~ 13744681 (+)
XLOC_031922 tmem198b coding downstream 431621 13779857 ~ 13870158 (+)
XLOC_031897 AL929243.2 non-coding upstream 1569943 11774617 ~ 11774732 (+)
XLOC_031889 BX548046.3 non-coding upstream 2326143 11018416 ~ 11018532 (+)
XLOC_031888 NA non-coding upstream 2336245 10988645 ~ 11008430 (+)
XLOC_031887 NA non-coding upstream 2413585 10930890 ~ 10931090 (+)
XLOC_031925 dre-mir-153b non-coding downstream 632709 13980945 ~ 13981092 (+)
XLOC_031933 NA non-coding downstream 1957529 15305765 ~ 15308585 (+)
XLOC_031935 CR956630.1 non-coding downstream 2195819 15544055 ~ 15544170 (+)
XLOC_031937 CR759882.1 non-coding downstream 2547398 15895634 ~ 15902635 (+)
XLOC_031938 CR847983.1 non-coding downstream 2590385 15938621 ~ 15940105 (+)

Expression


Co-expression Network