XLOC_031920 (wnt6a)


Basic Information

Item Value
gene id XLOC_031920
gene name wnt6a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 13726844 ~ 13734490 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00062497
atgaaatgtgctataaacAAACTTGTGTTTTTAGACATGCAAACTATATTGTTTTTTGTGGTAATGtgtatctttaatttttttatagaaCTATTTCTGTTTCTTTTACACCACAGGGTGAATGGGAACCCTTTAGTAATGGATCCCAATAGCATCTGCCGTAAAACTAGGATGTTGGCTGGCAGACACACTGACCTGTGCCAGTCTCAGCCTGAGATCATTCAAGAAGTGGCAAAAGGTGCCCGGCTGGGCATACGAGAATGCCAACATCAGTTCCATAACCATCGTTGGAACTGCACCAGTCAGGGCAGAAACCTGGCCAAGATCCTGCAACAAGATATCCGGGAAACTGCATTTGTGTATGCCGTCACAGCTGCCGGGGTGATGCATGCAGTGACACAGGCCTGCAGCCAGGGAGCGCTGCCTCAGTGTGGCTGTGTGACCCTTCAGAGCTCCTCAGAAACGTACCGCGTCTCCCCAGCAGAGGAAGTGCTCATCCAGGCCTCATCTCTCCATGATTGGCACTGGGAGTGGGGCGGCTGTGGAGACGATGTAGACTTTGGTTATGAAAAGTCTCGTCAGTTCATGGACATCAGGCAGCGAAAGGGCAAGAGCGACATCAGGAGCCTTATTGACCTGCACAACAACGAGGCAGGAAGAGTGGCCATCCAGATACAGATGAGGACGGAGTGTAAATGCCACGGTCTTTCTGGGTCCTGCACTCTCCGCAGCTGCTGGAAGAAGATGCCGCTCTTCCGTCAGGTTGGTGATCAGCTCATGCAGAGCTTCCACACAGCCGTCCGCGTGATGGGTGGCAATGATGGGAAATCGCTGGTGTCCATCGATCCGGATGCTCCCCCCCTCGATGCCAATGTCCTGATCTATTCTGCAGAGTCACCTGACTTCTGCAAAGCCAATCACAGGAGCGGCACAGAGGGCACAGGGGGTCGTGCGTGTAACAGGACAGAGACGGGGCCGGGCGGCTGTGACAGTCTGTGCTGTGGGAATGGGTTCGCGGATTTTACAGTGGAAGAGGAGGAAAACTGTGAGTGTCGCTTTCACTGGTGCTGCGAGGTTCAGTGCCAGACATGCTCTCAGAGGAAGAATGTCAGCCTCTGCTTGTAA
>TCONS_00062498
CAGAGCTCCTCAGAAACGTACCGCGTCTCCCCAGCAGAGGAAGTGCTCATCCAGGCCTCATCTCTCCATGATTGGCACTGGGAGTGGGGCGGCTGTGGAGACGATGTAGACTTTGGTTATGAAAAGTCTCGTCAGTTCATGGACATCAGGCAGCGAAAGGGCAAGAGCGACATCAGGAGCCTTATTGACCTGCACAACAACGAGGCAGGAAGAGTGGCCATCCAGATACAGATGAGGACGGAGTGTAAATGCCACGGTCTTTCTGGGTCCTGCACTCTCCGCAGCTGCTGGAAGAAGATGCCGCTCTTCCGTCAGGTTGGTGATCAGCTCATGCAGAGCTTCCACACAGCCGTCCGCGTGATGGGTGGCAATGATGGGAAATCGCTGGTGTCCATCGATCCGGATGCTCCCCCCCTCGATGCCAATGTCCTGATCTATTCTGCAGAGTCACCTGACTTCTGCAAAGCCAATCACAGGAGCGGCACAGAGGGCACAGGGGGTCGTGCGTGTAACAGGACAGAGACGGGGCCGGGCGGCTGTGACAGTCTGTGCTGTGGGAATGGGTTCGCGGATTTTACAGTGGAAGAGGAGGAAAACTGTGAGTGTCGCTTTCACTGGTGCTGCGAGGTTCAGTGCCAGACATGCTCTCAGAGGAAGAATGTCAGCCTCTGCTTGTAAAAGAGTGTAGTGGCTGTAATAGGACAgtatgatttttgtttttgtgaatccaccagaggccgctgtgttcgctttttaagatctcaaatttctctggcaagtgtcattcatgcctgctgttctcacgtaaatccaccagaggccgctgttgactgactgaccaatcggcCGACCCCCCTCGTTCTTCTCTaaactgatttttaccacgttttcagatttta

Function

symbol description
wnt6a Predicted to enable cytokine activity and frizzled binding activity. Predicted to be involved in canonical Wnt signaling pathway; cell fate commitment; and neuron differentiation. Predicted to act upstream of or within Wnt signaling pathway. Predicted to be located in extracellular region and membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular space. Is expressed in yolk. Orthologous to human WNT6 (Wnt family member 6).

GO:

id name namespace
GO:0060070 canonical Wnt signaling pathway biological_process
GO:0030182 neuron differentiation biological_process
GO:0045165 cell fate commitment biological_process
GO:0007275 multicellular organism development biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005102 signaling receptor binding molecular_function
GO:0005109 frizzled binding molecular_function
GO:0005125 cytokine activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-111114-1 Predicted to enable cytokine activity and frizzled binding activity. Predicted to be involved in canonical Wnt signaling pathway; cell fate commitment; and neuron differentiation. Predicted to act upstream of or within Wnt signaling pathway. Predicted to be located in extracellular region and membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular space. Is expressed in yolk. Orthologous to human WNT6 (Wnt family member 6).

Ensembl:

ensembl_id ENSDARG00000038283

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00062497 False 1125 mRNA 0.52 3 13726844 13734269
TCONS_00062498 True 899 mRNA 0.53 2 13730522 13734490

Neighbor

gene id symbol gene type direction distance location
XLOC_031919 asic4b coding upstream 37853 13606410 ~ 13688991 (+)
XLOC_031918 gmppab coding upstream 212614 13506841 ~ 13514230 (+)
XLOC_031917 NA coding upstream 378608 13344675 ~ 13348236 (+)
XLOC_031916 rprmb coding upstream 392622 13333133 ~ 13334222 (+)
XLOC_031915 NA coding upstream 459701 13260082 ~ 13267143 (+)
XLOC_031921 cdk5r2a coding downstream 8409 13742899 ~ 13744681 (+)
XLOC_031922 tmem198b coding downstream 45367 13779857 ~ 13870158 (+)
XLOC_031923 dnpep coding downstream 161774 13896264 ~ 13920394 (+)
XLOC_031924 ptprnb coding downstream 185989 13920479 ~ 13987739 (+)
XLOC_031925 dre-mir-153b coding downstream 246455 13980945 ~ 13981092 (+)
XLOC_031897 AL929243.2 non-coding upstream 1952112 11774617 ~ 11774732 (+)
XLOC_031889 BX548046.3 non-coding upstream 2708312 11018416 ~ 11018532 (+)
XLOC_031888 NA non-coding upstream 2718414 10988645 ~ 11008430 (+)
XLOC_031933 NA non-coding downstream 1571275 15305765 ~ 15308585 (+)
XLOC_031935 CR956630.1 non-coding downstream 1809565 15544055 ~ 15544170 (+)
XLOC_031937 CR759882.1 non-coding downstream 2161144 15895634 ~ 15902635 (+)
XLOC_031938 CR847983.1 non-coding downstream 2204131 15938621 ~ 15940105 (+)

Expression


Co-expression Network