XLOC_031922 (tmem198b)


Basic Information

Item Value
gene id XLOC_031922
gene name tmem198b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 13779857 ~ 13870158 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00062500
AATCAAAATACTAACTAGACGTTTGTAACTGATTCTGTTGTGCTGTTTTGAAGGCATTGTAGCTGTGCTTCAGTCAGGCATTggCGCATTTGATGGGTCTGAAGGAAAGCATGTGCTCAGTACGGTAGCTGCTGTTTCCGCTCCAGGCCTGATAGCAAGGATAATCTCCCTTCTCCAGGATGAACTGCTGACCTTGATACTCTGGGTACTCATAACCAACCCAGCTGCAGGAAAAAGAATCAAGTTATCTTCAATAAAAAAGCTGTTTCACTGCAAATCATTCACTCCACCCACTCTTGGAGAAAATCCAAGGCTGACACATGGAGCCTGAATGGACTGTATGGAGCTCAGTGTTCCAGGAGGACCATCACCTGCTTCTCACTTCCCCAGTCATTCAGCCATTACACAGAACAAACAGGTAGATTGATGTGGATGCGAGGTGTTCCCTGACTTCCCAGCCCCTTCCCCTTCCCTCAGTTATCCCTTCCCTTCAGCGTGTTCTGTCGGTCCAGCACACTGCGGTCAGCATGACCTCCACCTTGCAGACCCTGGCCTTTAAACTGGCCCCTCCCTCAAGAGAAGCTGGGTCAGGACAGCTGGAGCCCTGTAGTGATGTACAGGGGCGACGCTATGAG
>TCONS_00064608
CTGGTTGCTGTGGGCCTGGGTGCCGAACTCGTAATATTTCCTGTACTCTCCCTGACGTCTGTCTCTCTCAAAGATATACTGGTATCCACGGTAACCTGGAAACTGGTAACCCACCCAGCTGCCGCATGTGCGAGGTTGAGGAAGGGAAAAAACAGTATTATTGAGATAATGCTGTGTGTAGACAGCAGTAATTTGATGTTACAAACGTAATTTGAAGCAGACTGAGGATAACTTACGCTCCAGAGTTGACTTTGATAGAAGGAACCTCCTTACTGCACCAGCCCATGGCCATAAGAGAAGGGTAGTCGTCGCACATCTCAAACTTGCGTCCCATCATGTCCTCACACTCATACATGCGCATTTGATGGGTCTGAAGGAAAGCATGTGCTCAGTACGGTAGCTGCTGTTTCCGCTCCAGGCCTGATAGCAAGGATAATCTCCCTTCTCCAGGATGAACTGCTGACCTTGATACTCTGGGTACTCATAACCAACCCAGCTGCAGGAAAAAGAATCAAGTTATCTTCAATAAAAAAGGATGTGGCGCCCTCTCAGATGTTCAGGAACATGATACACTTTTGTGAGAGTCCAAACAAAAGCTGTTTCACTGCAAATCATTCACTCCACCCACTCTTGGAGAAAATCCAAGGCTGACACATGGAGCCTGAATGGACTGTATGGAGCTCAGTGTTCCAGGAGGACCATCACCTGCTTCTCACTTCCCCAGTCATTCAGCCATTACACAGAACAAACAGGTAGTGTTTACTCATCTGCCCCCACTCCTGCCGTCCGCGCGCTACACCCTATACCTGTGTGTCATGAATGTTTATTAGCGTGGATCTCATTCCGTGTGTGTGAGCGACGGGGTCAGTTAGTATGCAGGCGCACTATGTGTGTGCGTCTCTTTCATAAATCCATCTGTTCCATGGTAACCCTCTCTTTTTTTCTACGTCTCTGTGAGATGGCATTAGCATCCTCGTGTTGTCAGGTAGGCTCTGGAAAACAAGAGCTGTGTGGGTGACGCACACATCTCCAGGACTGTTAACCAGTCGCCTGTCCTTGGAACTGTATTTCTGCAAAGTTTAACACTCGCCTTGAATATAATATCCGCCATACAGGCGCACGGCGCAACAGTTACATCAATTTCACTGCCAAATTTCTGatttgcattcattttaaagattccATCTCTTATGTAAATGCAACAGACAAAGATGTTGCACTATGGATATGTTTACCGGATTGGACAAGAGAAAGAgaacacaaatacatttttttgttgttgttgttattttgggtGTACATACAAAATTTATAGCACATGGTTCCCCc
>TCONS_00062501
CCACTGTATGGCatcactttatttttaagagcataTGATCATAAACATTGTCTTTTTTACAGCTGTTTCACTGCAAATCATTCACTCCACCCACTCTTGGAGAAAATCCAAGGCTGACACATGGAGCCTGAATGGACTGTATGGAGCTCAGTGTTCCAGGAGGACCATCACCTGCTTCTCACTTCCCCAGTCATTCAGCCATTACACAGAACAAACAGGTAGATTGATGTGGATGCGAGGTGTTCCCTGACTTCCCAGCCCCTTCCCCTTCCCTCAGTTATCCCTTCCCTTCAGCGTGTTCTGTCGGTCCAGCACACTGCGGTCAGCATGACCTCCACCTTGCAGACCCTGGCCTTTAAACTGGCCCCTCCCTCAAGAGAAGCTGGGTCAGGACAGCTGGAGCCCTGTAGTGATGTACAGGGGCGACGCTATGAGGTTGTCCCATCAGTGGTCTGCTCCATGTGCTGTCTCTTCGGAATCATCTATTGCTTCTTTGGTTACCGCTGTTTCAAAGCTGTACTCTTCCTGACGGGACTGATGTTTGGCTCCGTCATCATTTTCCTTCTCTGCTACAAGGAGCGAGTGTTAGACACGCAGCTGAGCGTGGAGGCTAGTGTGGGCATCGGCCTGGGCATCGGCACCCTCTGCGGCCTGGTTACCATGCTGGTGAGGAGCGTTGGCCTCTTCATGGTAGGGCTGCTCCTGGGCCTGCTGGTGGGCATCGGGACTCTGATCGGCATGGAGGAGCTCTCGTCCAACCCCCCGCGATCAGTATGGGTGCCCCTGGGTGTGCTGCTGGGCCTGGGCATGCTGTTCGCCGTTCTCACCCTACAGTGGCAGAGATGCTTCACCACGCTCTCCACAGCCGTGTTTGGAGCTGCGGTCATCGTTGTAGCCACTGATTATTTCGTGGAGCTCTTCGCTTTGGTGAGGTATATTTACGAGCGGGTGAAGACTGGCCCCCGGGAGCCGGTGTGCTGGACGACGTGGGTGGTCCTGGGAGCCTGGCCTGCTCTCGCCCTGCTGGGAGTGTTGGTGCAATGGAGGGTGACGGCGGAAGGTTACTCCCACACCAAGGTGATGATCAGTCGTCAGCAGCGGCGGGTTCAGCTCATGCGTATTCGTCAGAAAGAGGAGAGGCGGGAGAGCAGcaggaagaagaagaggaagcagCCGCAGAGCGCACAGCACACGCATGCTGCCAAAGCTCTGCATCCGGAGCCTGCCTACCGCAGAAAACCCAACCCTATACGACGCTTCGATGGAGACGTGCTTTCTCCTAGCTATATCCAGAGTTTCCGGGACCGTCAGGTGGATGGTCGTGCTTATCCAGTAGGTGGACTGATGCCTTCAGGCCACACAAGTGTGGATATGGACTATGACTGTGGCTCCACCGTCCCGCTCACTGCTGGGGTTGGACCACACGTCCGGGTCTGA
>TCONS_00064822
CTGTTTCACTGCAAATCATTCACTCCACCCACTCTTGGAGAAAATCCAAGGCTGACACATGGAGCCTGAATGGACTGTATGGAGCTCAGTGTTCCAGGAGGACCATCACCTGCTTCTCACTTCCCCAGTCATTCAGCCATTACACAGAACAAACAGTGCATGGCAAAGCTGATGAGTTCTTCTGCTGGTAGTACAAAGCTGAGGGCAGAAAGCACCTGCCACATGTTCACCGCCACCATGGAAACTAATCCCGCTCTGTGTGTGAAAAACGGGCCCTGACAGCTTCAACACAGACATCTGCATCTCCAACAAATATACTGTGACACTCTCGCGCTGGGTCTtggtgtgagagtgtgtggttAATGTCTTGTGTTTTTTGATGTTTTGCGAGTTTCTGTGATATGTTGATATCACAGTAggttaaaaaaatagaataaaa
>TCONS_00062502
TGTATTTATGGGTGTTTTGGCATCTTTTTGATGAGTGACTGTCATCTTAATCAGCTCACCGTACGGCATGgtatataaaataatttctgcGCTTCATCTGCAATAGTGGACTTGTTCAGAAACGCAAAGCAATACTCGGTGCGTGGACTAATTGGCAGCACCCACAACCAACGAAAAACCGACGGGGAGACGCTCGAGGGAACCTGGGGAACATCACCGGAGCTGCTCGTCAGAACAAACAAGTGCTTTATTTAACACAGAGAACTCGAGTGGGAAGGACTGGAATGTGGCTGTTTGGCTGGAGATTAGATTGTCGGGCGAGCGAAGCCGAAGCACGAGACCGAGATCTGGGAGAAGCAGGATGCTGAACCGCGGTCAGGGTAGATTGATGTGGATGCGAGGTGTTCCCTGACTTCCCAGCCCCTTCCCCTTCCCTCAGTTATCCCTTCCCTTCAGCGTGTTCTGTCGGTCCAGCACACTGCGGTCAGCATGACCTCCACCTTGCAGACCCTGGCCTTTAAACTGGCCCCTCCCTCAAGAGAAGCTGGGTCAGGACAGCTGGAGCCCTGTAGTGATGTACAGGGGCGACGCTATGAGGTTGTCCCATCAGTGGTCTGCTCCATGTGCTGTCTCTTCGGAATCATCTATTGCTTCTTTGGTTACCGCTGTTTCAAAGCTGTACTCTTCCTGACGGGACTGATGTTTGGCTCCGTCATCATTTTCCTTCTCTGCTACAAGGAGCGAGTGTTAGACACGCAGCTGAGCGTGGAGGCTAGTGTGGGCATCGGCCTGGGCATCGGCACCCTCTGCGGCCTGGTTACCATGCTGGTGAGGAGCGTTGGCCTCTTCATGGTAGGGCTGCTCCTGGGCCTGCTGGTGGGCATCGGGACTCTGATCGGCATGGAGGAGCTCTCGTCCAACCCCCCGCGATCAGTATGGGTGCCCCTGGGTGTGCTGCTGGGCCTGGGCATGCTGTTCGCCGTTCTCACCCTACAGTGGCAGAGATGCTTCACCACGCTCTCCACAGCCGTGTTTGGAGCTGCGGTCATCGTTGTAGCCACTGATTATTTCGTGGAGCTCTTCGCTTTGGTGAGGTATATTTACGAGCGGGTGAAGACTGGCCCCCGGGAGCCGGTGTGCTGGACGACGTGGGTGGTCCTGGGAGCCTGGCCTGCTCTCGCCCTGCTGGGAGTGTTGGTGCAATGGAGGGTGACGGCGGAAGGTTACTCCCACACCAAGGTGATGATCAGTCGTCAGCAGCGGCGGGTTCAGCTCATGCGTATTCGTCAGAAAGAGGAGAGGCGGGAGAGCAGcaggaagaagaagaggaagcagCCGCAGAGCGCACAGCACACGCATGCTGCCAAAGCTCTGCATCCGGAGCCTGCCTACCGCAGAAAACCCAACCCTATACGACGCTTCGATGGAGACGTGCTTTCTCCTAGCTATATCCAGAGTTTCCGGGACCGTCAGGTGGATGGTCGTGCTTATCCAGTAGGTGGACTGATGCCTTCAGGCCACACAAGTGTGGATATGGACTATGACTGTGGCTCCACCGTCCCGCTCACTGCTGGGGTTGGACCACACGTCCGGGTCTGACCACTCTTacttacaaataaacacacacacacacacacaaacacaaatccgGTGCTGACCTGACCCGGAGTCTCGCACGCACAGAGGCTCGGGTCCCCTCACCATTCgggacaaataaacaaacaattcaaGCACTTGTAACTATTAAAATACTGGACGCCTCATTCTGAGACCACGGTTGTATCGAAGAGCtgctttcaaacacacacaataacactAACACACTTTACCCGAACATGTGCCTGAAGTGTGGCATTCTGTTCACTTACTATACAAACCACTATcgactaaactaaactaactggGCTCCATTTCTGTCGAAGCGTTCAGTGTGGTGAATTCGTGTTCATCGATGTCTCGTTTCCGTTTGTGACGAATTCATCAGTCGGTGCTCAATCTCGTCTTCGTTCTCTTAATGCTGACTCCCATTTTAAAGTGTGTCATAGTAAAGTCCGTGGATTCCAGCACCAGTGTTTTTGTACTGTGAGATCCCGCTTTCTGGCCCAGGAccgtaccaaaaaaaaaaaaaaaaacgtcaagcAGGGGTGCCTTGGAGACACCAGTGAGAAACTCCCTCTCAGGAGAATTTAACCTCCTTAGCCTTGTTTCAGAAAGGCTGTAGGGCAAAGAGCCATATTATTGCTGATCAGAGCCACTCTGGGACGCAGAGCTGAACGCCTGGTGATGAAGCCAACGGAAAAGAGGGAAGATGATACTCAGGGACAGCGCCAAATGAAGGTTTGGGGTGGGGGACCACTATGAATCGTGAGGACGTAGTTTGAAAAGCGCAACAGGGACGTCACCATGACTGTTCAGTCACTGCAGTGTGTTAAACTAGTTTGCAAGTCAGCATTTGCGGGACGTGATTATGGCTGAGGagcaaaactaaaaaaagacCCCCGCGATCCTTTGGGGCAAAACTTGCATGACATAACCACCATCATTTTCAGTCTTCATACAAACAACTGAAACAAGCTGTGGTGTCTCTTTCTTCCTCTCACTTTTTTCGTTTTTAATCTATGTTGTGTACATACAATGCATATTTAGTATAACCATTTCAACATGGCCTCATATTTATTAGATATCTGTTTACTTCGAATTGATTTTCTTTAAGGGATTGCGAGTCCTGGCAGGTGGATAAATGgtggtatttatttgtgtgttcatTCAGTCATGTTTTTCTTTATCATTTACTGTCTAATAACAGAGTGTAGTCTTAAAGACGGGAAGTCCACATGCAATGAAACCTTTGACAATCTGACATTGACTCTTTCCTTCTTTTTTGGGACACTGTACAACAGCATGTGTTTGTATGGGCCTGCTTATTATGGTAAACTTTGTGAAATCA

Function

symbol description
tmem198b Predicted to be involved in positive regulation of canonical Wnt signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasmic vesicle and plasma membrane. Is expressed in anterior macula. Orthologous to human TMEM198 (transmembrane protein 198).

GO:

id name namespace
GO:0090263 positive regulation of canonical Wnt signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050809-123 Predicted to be involved in positive regulation of canonical Wnt signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasmic vesicle and plasma membrane. Is expressed in anterior macula. Orthologous to human TMEM198 (transmembrane protein 198).

Ensembl:

ensembl_id ENSDARG00000034685

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00062500 False 635 mRNA 0.50 4 13779857 13852352
TCONS_00064608 False 1329 lncRNA 0.46 4 13780630 13788649
TCONS_00062501 False 1437 mRNA 0.56 5 13787855 13868810
TCONS_00064822 False 439 lncRNA 0.46 2 13787917 13791320
TCONS_00062502 True 2947 mRNA 0.50 5 13806466 13870158

Neighbor

gene id symbol gene type direction distance location
XLOC_031921 cdk5r2a coding upstream 35176 13742899 ~ 13744681 (+)
XLOC_031920 wnt6a coding upstream 45367 13726844 ~ 13734490 (+)
XLOC_031919 asic4b coding upstream 90866 13606410 ~ 13688991 (+)
XLOC_031918 gmppab coding upstream 265627 13506841 ~ 13514230 (+)
XLOC_031917 NA coding upstream 431621 13344675 ~ 13348236 (+)
XLOC_031923 dnpep coding downstream 26106 13896264 ~ 13920394 (+)
XLOC_031924 ptprnb coding downstream 50321 13920479 ~ 13987739 (+)
XLOC_031925 dre-mir-153b coding downstream 110787 13980945 ~ 13981092 (+)
XLOC_031926 tmem182b coding downstream 431056 14301214 ~ 14312611 (+)
XLOC_031927 pou3f3b coding downstream 1079792 14949950 ~ 14957388 (+)
XLOC_031915 NA non-coding upstream 512714 13260082 ~ 13267143 (+)
XLOC_031897 AL929243.2 non-coding upstream 2005125 11774617 ~ 11774732 (+)
XLOC_031889 BX548046.3 non-coding upstream 2761325 11018416 ~ 11018532 (+)
XLOC_031888 NA non-coding upstream 2771427 10988645 ~ 11008430 (+)
XLOC_031933 NA non-coding downstream 1435607 15305765 ~ 15308585 (+)
XLOC_031935 CR956630.1 non-coding downstream 1673897 15544055 ~ 15544170 (+)
XLOC_031937 CR759882.1 non-coding downstream 2025476 15895634 ~ 15902635 (+)
XLOC_031938 CR847983.1 non-coding downstream 2068463 15938621 ~ 15940105 (+)

Expression


Co-expression Network