XLOC_031924 (ptprnb)


Basic Information

Item Value
gene id XLOC_031924
gene name ptprnb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 13920479 ~ 13987739 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00062507
CCGGCGCTCTTACCCCCTCCCCTCAGGAGCGCGCGCTGCtgcttttcacacacacatacacacacacacacacacacacacactcctctttATCGCTCTCTTCCCCAAGTCTCGTGTTTGTGGAGTTTGGCACACGCGCAGCATCACATCGATCACCGTGTCATCTAAATATGTCGGTGTGAACGGAGAGAAAAGAGCAGAGAGAAGCCGAGGGAAGATGAGATCGGCGCGTCTGTGGATGCTGGTCTGTTTGGCGACTGCGTGTTGTCAGCTTGGCACCGGTGATAAATACGGTTGTCTGTTTGATGAAGGCCTTTGCTCCAGAGGGGAGATTTGCTGGGATGATGAGCTGTTTGGTCAGTGTCTTGCGGAGAGACAGGAAAGGTTTCGCTACAGGGTGACTGCAGTTCTGTTGGACAGACTACAGTCATTACTGCAAACACTCATGAAGGAAGGACTAACTTGGCAGGATGATGTTACCCAATCAGTGATTAAGAAAGAACTCAGCAAAGTGCCGAAGATCCCACTGTCTTCTGGCACAAAGAATGGCCCGTCCATAGAGTCTCAGAGTGGCTCTACAAATCAGCTCAACTCCAAACAGGCACATCCCTACATGGACTACATGATTGTCGATCCGCCTCAATCTTCTCTCCATATGCAAAGTCTGGATCCTTATAGCTACCAGAGATATGGTTATCAAGATGAAGAGGAGCGCTCTTTAAACCTGGTGGAGAAGGGCAGATATCCCGCATCCTCCTCTCGTgtcaggggaaatcctccagttCCTCCATCTCTGGATAAGGATGATCAGCTTCTGCAGGATCTGATGactctcctcctttcctctcCTGCACAGCCCAGCTCACGCCATCGTGTGGCAGCACCACACTCCACCTCATCTTTTTTCCAGGATCTGGACTTCCCGCTTGAATACAAGGATTATAACAAGGACACTTTTTCCCAGGATGAAAGGATCAGCAGCCAGCGAGAGCCAAAGAAAGGTCCCCAGAAGTATGGAAGCTTTTCTGCGCACAGCGCTGCAGGAACATCTCAACAAGGCCTAAATGAGCTGCTTCTGCAACATGGGTTTGATCTAAATCACCTGAACCCTGAGGAGATGGAGCGTCTCTTCTCTGTCCTTCAGTTCCTGCAAAATGAGCCACCAAATAATCAGAGAAAATCTGAAGCCAAGGATTCCTCTGCGCCTCCAAAAGTGATGAAGATTACCGAAGGAGAGATGACCCATGTGGTGGAGAAGGCTTCTTCACCCGCTTCAAATTCCTCCTCTCCTCCGCTCAAACCTGGACCTCAAACCTCCCCCAAGAGCCCCGGCTCCCCAGGGGCCTCAAAGGATAACTCCATCCCAACGGGCGCAAGTGTACTAGGGCCTTTAACTCTCAAGCAAGAGGAAGGGCCGCTTGGAAAGGGAGCCCTGAGTGTGCAACCAGGAAAGAATAAAACTAAGATAAAGGAGGAGTTTGGATACATTGTCACCAATCAGAGTGTGGTTGGTCCAGCTGTCACTTTCCGGGTGCTCCCGAACAGCCAGAATTTAACAGCAAGTGAGATTTCCGAAAAGACTGTGGCTCAAAAGAACCTTCTAGAAACAGAGACTGGTCTGAAGGTGCTTCAGGCAGGTGTCGGTGAGAAGAGCGAAGGCCATGCGTTGCCTGTGGCAACACGTGTTCGTGACAACACCCAGTGGGTCTTCCTCATGTttgtgggtgtggcttgtttggGTGGACTCCTGGTGGGGGCGTTGACCATCGCCTGTCTGCGCACTCATGCCCGTCATTTAGCATCAGGGAAACTGGGACTGGGGCCTGAAGCAGGAAACGTGACACATTATGAGTACCAGGATCTTTGTCGGCAGCACATGGCTGCTAAGTCCTCTCTGGGCAGGCAGGACTGTGGCGTCGGAGCTGCAGGTGGTGCTGGACCGGGAGCTGTGGGAGGAGGTGGCGGTGGAGGAACAGATACGTCACGTGTCAGCAGTGTGTCTTCACAGTTTAGCGACGCCCCTCAGCCAAGTCCTAGTTCACACAGCAGCACCCCCTCCTGGTGCGAGGAGCCAGCACAGTCTAACATGGATATCTCCACTGGGCACATGATTCTGGCATATATGGAAGATCATCTGAAGAATAAAGACCGCTTGCTTAAAGAGTGGGAGGCTCTGTGCTCCTACCAGGCAGAACCCAGCACCATCTCAGCAGCTCAGAGTGAAAGTAACATCAAGAAGAACCGCTGCTCGGATGCCGTGCCCTatgaCCATTCCAGAGTGAAGCTGAAAGCTGAGATTAACCCATCCAGGACAGATTACATCAATGCCAGCACCATTATTGAGCATGACCCCCGGATGCCAGCGTATATCGCCACCCAAGGACCCCTCTCACACACCATCTCTGATTTCTGGCAGATGGTTTGGGAAAGCGGGTGTACAGTCATAGTGATGATGACAGCTCTGGTTGAGGATGGAGAAAAGCAGTGTGATCGCTACTGGCCCGATGAAGGCTCTTCTCTATACCACATCTACGAGGTGAACCTGGTGTCTGAGCATATCTGGTGTAATGACTTCCTGGTGCGTAGTTTCTACCTGAAGAACGTCCAAACCCAGGAAACTCGCACCCTGACTCAGTTCCACTTCCTAAGCTGGCCCGCACAGGGAATACCCACTTCCACACGCCCTCTGCTGGACTTTCGCAGGAAAGTCAACAAGTGCTACCGTGGACGCTCCTGCCCCATCATTGTGCACTGCAGTGATGGTACAGGCCGGACTGGAACATATATCCTGATTGACATGGTCCTGAACCGCATGGCTAAAGGAGTGAAAGAGATCGATATTGCTGCAACCCTGGAGCACATTCGAGATCAAAGACCAGGAATGGTTCGCACCAAGGATCAGTTTGAGTTTGCTCTCACCGCTGTGGCCGAAGAGGTTAATGCTATCCTCAAAGCTCTACCGCAGTAAAATGAATGGCTGTATGAAGTcgactcacacacatacatacgcataCTATTACAACTACATGCATGTGGGCAATCATGCCTTAAATGGCCACCGAGGTTAGTATTATGGATGTGCATGAGTAATGGAACTAGTCAAGTACTTGTTTACTAAAACACGATTTGCACTTTGAGTTTTCTTTGCTGAAATGATTATTGCTAAACCCTTCACGTAAATCATGTTACACTACATAAGTTAGACTGTGATATGAAAGGGTGAAAGATCCAAGTGTGCGACATTTCAATCTTTATGGTTTTGATTAGGGTCATGCTTTCCACTAGATAAAGATCAGCTTTTATGATGGAAAGAAAGCCACCAGGAGATATGAGAGAGTTTTCTGTGGCCGAAGAGCACTTTTTTACCCACAGCAAACaccgttaaagggatagtttacctaaaTACTAAGATTTTGTCAAAAATTCACCCACCACTCAC
>TCONS_00062508
ttggttagcacagttgcctcacagcaagaaggttgctggttcgagtcctggaggtgtttctgtgtggagtttgcatgttctccctATGAGCTGTTTGGTCAGTGTCTTGCGGAGAGACAGGAAAGGTTTCGCTACAGGGTGACTGCAGTTCTGTTGGACAGACTACAGTCATTACTGCAAACACTCATGAAGGAAGGACTAACTTGGCAGGATGATGTTACCCAATCAGTGATTAAGAAAGAACTCAGCAAAGTGCCGAAGATCCCACTGTCTTCTGGCACAAAGAATGGCCCGTCCATAGAGTCTCAGAGTGGCTCTACAAATCAGCTCAACTCCAAACAGGCACATCCCTACATGGACTACATGATTGTCGATCCGCCTCAATCTTCTCTCCATATGCAAAGTCTGGATCCTTATAGCTACCAGAGATATGGTTATCAAGATGAAGAGGAGCGCTCTTTAAACCTGGTGGAGAAGGGCAGATATCCCGCATCCTCCTCTCGTgtcaggggaaatcctccagttCCTCCATCTCTGGATAAGGATGATCAGCTTCTGCAGGATCTGATGactctcctcctttcctctcCTGCACAGCCCAGCTCACGCCATCGTGTGGCAGCACCACACTCCACCTCATCTTTTTTCCAGGATCTGGACTTCCCGCTTGAATACAAGGATTATAACAAGGACACTTTTTCCCAGGATGAAAGGATCAGCAGCCAGCGAGAGCCAAAGAAAGGTCCCCAGAAGTATGGAACTGCAGGAACATCTCAACAAGGCCTAAATGAGCTGCTTCTGCAACATGGGTTTGATCTAAATCACCTGAACCCTGAGGAGATGGAGCGTCTCTTCTCTGTCCTTCAGTTCCTGCAAAATGAGCCACCAAATAATCAGAGAAAATATAGTATGTCTTGTGTGCTATATCAGATGAAGATTACCGAAGGAGAGATGACCCATGTGGTGGAGAAGGCTTCTTCACCCGCTTCAAATTCCTCCTCTCCTCCGCTCAAACCTGGACCTCAAACCTCCCCCAAGAGCCCCGGCTCCCCAGGGGCCTCAAAGGATAACTCCATCCCAACGGGAAAGAATAAAACTAAGATAAAGGAGGAGTTTGGATACATTGTCACCAATCAGAGTGTGGTTGGTCCAGCTGTCACTTTCCGGGTGCTCCCGAACAGCCAGAATTTAACAGCAAGTGAGATTTCCGAAAAGACTGTGGCTCAAAAGAACCTTCTAGAAACAGAGACTGGTCTGAAGGTGCTTCAGGCAGGTGTCGGTGAGAAGAGCGAAGGCCATGCGTTGCCTGTGGCAACACGTGTTCGTGACAACACCCAGTGGGTCTTCCTCATGTttgtgggtgtggcttgtttggGTGGACTCCTGGTGGGGGCGTTGACCATCGCCTGTCTGCGCACTCATGCCCGTCATTTAGCATCAGGGAAACTGGGACTGGGGCCTGAAGCAGGAAACGTGACACATTATGAGTACCAGGATCTTTGTCGGCAGCACATGGCTGCTAAGTCCTCTCTGGGCAGGCAGGACTGTGGCGTCGGAGCTGCAGGTGGTGCTGGACCGGGAGCTGTGGGAGGAGGTGGCGGTGGAGGAACAGATACGTCACGTGTCAGCAGTGTGTCTTCACAGTTTAGCGACGCCCCTCAGCCAAGTCCTAGTTCACACAGCAGCACCCCCTCCTGGTGCGAGGAGCCAGCACAGTCTAACATGGATATCTCCACTGGGCACATGATTCTGGCATATATGGAAGATCATCTGAAGAATAAAGACCGCTTGCTTAAAGAGTGGGAGGCTCTGTGCTCCTACCAGGCAGAACCCAGCACCATCTCAGCAGCTCAGAGTGAAAGTAACATCAAGAAGAACCGCTGCTCGGATGCCGTGCCCTatgaCCATTCCAGAGTGAAGCTGAAAGCTGAGATTAACCCATCCAGGACAGATTACATCAATGCCAGCACCATTATTGAGCATGACCCCCGGATGCCAGCGTATATCGCCACCCAAGGACCCCTCTCACACACCATCTCTGATTTCTGGCAGATGGTTTGGGAAAGCGGGTGTACAGTCATAGTGATGATGACAGCTCTGGTTGAGGATGGAGAAAAGCAGTGTGATCGCTACTGGCCCGATGAAGGCTCTTCTCTATACCACATCTACGAGGTGAACCTGGTGTCTGAGCATATCTGGTGTAATGACTTCCTGGTGCGTAGTTTCTACCTGAAGAACGTCCAAACCCAGGAAACTCGCACCCTGACTCAGTTCCACTTCCTAAGCTGGCCCGCACAGGGAATACCCACTTCCACACGCCCTCTGCTGGACTTTCGCAGGAAAGTCAACAAGTGCTACCGTGGACGCTCCTGCCCCATCATTGTGCACTGCAGTGATGGTACAGGCCGGACTGGAACATATATCCTGATTGACATGGTCCTGAACCGCATGGCTAAAGGAGTGAAAGAGATCGATATTGCTGCAACCCTGGAGCACATTCGAGATCAAAGACCAGGAATGGTTCGCACCAAGGATCAGTTTGAGTTTGCTCTCACCGCTGTGGCCGAAGAGGTTAATGCTATCCTCAAAGCTCTACCGCAGTAA

Function

symbol description
ptprnb Predicted to enable protein tyrosine phosphatase activity. Predicted to act upstream of or within protein dephosphorylation. Predicted to be located in secretory granule; synapse; and transport vesicle membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in type 1 diabetes mellitus. Orthologous to human PTPRN (protein tyrosine phosphatase receptor type N).

GO:

id name namespace
GO:0035773 insulin secretion involved in cellular response to glucose stimulus biological_process
GO:0006470 protein dephosphorylation biological_process
GO:0016311 dephosphorylation biological_process
GO:0030141 secretory granule cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016787 hydrolase activity molecular_function
GO:0016791 phosphatase activity molecular_function
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-100505-1 Predicted to enable protein tyrosine phosphatase activity. Predicted to act upstream of or within protein dephosphorylation. Predicted to be located in secretory granule; synapse; and transport vesicle membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in type 1 diabetes mellitus. Orthologous to human PTPRN (protein tyrosine phosphatase receptor type N).

Ensembl:

ensembl_id ENSDARG00000077047

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00062507 False 3439 mRNA 0.50 22 13920479 13987739
TCONS_00062508 True 2604 mRNA 0.51 21 13933464 13987268

Neighbor

gene id symbol gene type direction distance location
XLOC_031923 dnpep coding upstream 85 13896264 ~ 13920394 (+)
XLOC_031922 tmem198b coding upstream 50321 13779857 ~ 13870158 (+)
XLOC_031921 cdk5r2a coding upstream 175798 13742899 ~ 13744681 (+)
XLOC_031920 wnt6a coding upstream 185989 13726844 ~ 13734490 (+)
XLOC_031919 asic4b coding upstream 231488 13606410 ~ 13688991 (+)
XLOC_031926 tmem182b coding downstream 313475 14301214 ~ 14312611 (+)
XLOC_031927 pou3f3b coding downstream 962211 14949950 ~ 14957388 (+)
XLOC_031928 mrps9 coding downstream 993022 14980761 ~ 15029092 (+)
XLOC_031929 dph3 coding downstream 1139768 15127507 ~ 15131196 (+)
XLOC_031930 nck2b coding downstream 1157384 15145123 ~ 15246534 (+)
XLOC_031917 NA non-coding upstream 572243 13344675 ~ 13348236 (+)
XLOC_031915 NA non-coding upstream 653336 13260082 ~ 13267143 (+)
XLOC_031897 AL929243.2 non-coding upstream 2145747 11774617 ~ 11774732 (+)
XLOC_031889 BX548046.3 non-coding upstream 2901947 11018416 ~ 11018532 (+)
XLOC_031888 NA non-coding upstream 2912049 10988645 ~ 11008430 (+)
XLOC_031933 NA non-coding downstream 1318026 15305765 ~ 15308585 (+)
XLOC_031935 CR956630.1 non-coding downstream 1556316 15544055 ~ 15544170 (+)
XLOC_031937 CR759882.1 non-coding downstream 1907895 15895634 ~ 15902635 (+)
XLOC_031938 CR847983.1 non-coding downstream 1950882 15938621 ~ 15940105 (+)
XLOC_031939 NA non-coding downstream 2003196 15990935 ~ 15993964 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000024_01405425_01412752 PTPRNB, PTPRN coding CI01000024 null 1405075 ~ 1412752 (-)
bowfin (Amia calva) AMCG00001302 ptprn,ptprnb,LOC107748541 coding CM030137.1 CM030137.1 24322671 ~ 24351647 (+)