XLOC_031928 (mrps9)


Basic Information

Item Value
gene id XLOC_031928
gene name mrps9
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 14980761 ~ 15029092 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00062513
tatgagtgtttcccagtgatgggttgtggctggaagggcatccgctgtggaaaacatttgctggataagttggcggttcatttcgctgtggcaaccccagattaataaagagactaagctgaaaagaaaataaagaaatgaatattCACACAGaaatatgttatgttatgttatgttatgttatgttatgttatgttatgtaacTTACGTGCACTTGTGGAGACGTATATGATACTCACAAAGAACTCTGTACTACCAATGATTTTTTGACAATGATGAACGACGTCCCTTGATTCCAGGATGTGACGTTTTCACTACTTCCTGCCTAAGCACAAGTCGCCGAGCAAACATGGCAGCCTCCGGTAGCCGATGTGTGAGGTTGATTTTATGGAAGTATGGGAGCTGCGGGAAGAATTTCTGTTTGTCACGATCAAGGACAGCTTCACAGCTGCCGGTCAGACAGATTTGTGTGTCGTCGTCTTTGTGGAAGAAGAACCTTGCAGCTGCAGGACCACAGAAATTCACACAGGAGTTCATCGACAAACAGGTGGAGGAGTTCGAAATTGGCAAACGCCACTTGGCAAACATGATGGGGGAGGATCCAGAAACCTTTACACAGGAGGATGTTGATAGGAGCATTGCATATCTCTTCCCATCTGGGCTCTTCGAGAAGCATGCAAGACCTGTTATGAAGCACCCAGAGCAAATATTCCCAAAACAGAAAGCTGTCCAGTGGGATGCAGAAGGACGACCTTTTCACTTTCTGTTCTACACAGGGAAGCAGTCATACTATTCTCTTATGCATGATGTGTATGACAAGATGTTGGTGGTGGAAAAGCATCAGGATAAGATGAGAAATAAAGGCCTCTTTATGGCAGACACAAAGCAAATATCTCTGAGCGGGAGCAGGTGGCTGTTAAAAGAGGAAATGGAGGAGATCCTGGTAGAGAACATTTCAGATCAAGATTATTTGCGGTTTATCCAGCTGGCGGAGAGGTTGCTGTCCATGCCGTACTGCTCTCTGGAGGAGAATTTCATCCTGAAGTTTCGCAAACCACTGGAGGTTCAGTCCAGAAAACAGGAGATCCCTGAGCTGCAGCACGACGCACGTGGAGTTGCTTTCAGCGTTGCAGATGGCAGGAGGAAGTCTGCCAAAGCCAGAGTTACCCTCATAGACAGCGGCTCCGGCAACATCACAATCAACGGCACAAACTACCTGCACTACTTTCCTGTACTACAAGACAGGGAGCAGCTGATGTTTCCTCTGCACTTTGTAGGGCTGCTCGGCCGCTTTGACATTGAGGGCAGCGTGGAGGGCAGTGGTCGCTCGTCTCAGGCTGGTGCCGTGCGATTGGCCATCTCACGGGCACTGCTCAGCTTTGTGTCTGAGGGAGAGATGGAGAAGATGAGGCAAGCCGGTTTGCTGACCGCAGACCCCAGGATCAAGGAGAGGAAGAAGCCTGGACAGGAAAAAGCTCGCAAGAAGTTCACTTGGAAAAAGCGCTGAACAGGAAATCGTCAGTACAAGCAGCACAACTTCTCTATCGATTACTGAATCATTGGCTTATGCTCTGGACAACCACACACTGCTGATCTCAAACACAAATTAGCTGCACTGCATCAGTTACATAAACATTGTTCCCTATTGGCTGATGCAATTGAAAGTTGAAAGTAAACCATcattgtgtgtgttcatgtgtataTTAACGCTGGTttgaaaatgttaatataaaCATCTTtcaataaacatttgtttttcatatttcatttgttttcttttgctaaaataaatgcaGCTGCTTTAAAAGGTTGTAAATTTGAGGATTTATTACAGGATTTCATGCCTTAAATATAGAAAAAGTGTCTAAATTCCTAAATGTACAATCTCATGGCActcaaaggaatagttcactcaaaaatcacATTCTACTCACCTTCAGGTGGTTTCAAAACTTTATTgcttaaaataagatttttttgaagaatgttggaatccgGTAGCCAGTAAGAAAAATTAAATCCAATTGAAGTCATTGGCTagatgtttccaacattcttcagaatgtctTCTTTTGAATGGAAGAGTGAAACTAAATTCTAACAGGTCTGGAACACATGAAGCGTGATTTTTGGATGagctaaaaaaatgaatatacagttgaagtctataTATAATAatcagcccccttttgaattagttttttttatatttcccaaatgatgtttaacaaagacaATTATCACTgtaggtctgataatatattttttgtcctggggtccgttcttcgtagcTCACttatgatctaagatgatttggcagatcctggatctgttcatcttgataactgatttttggctaatttggttctttagtttgcgaatcagattaaaatgtctggataaactgatctgagatcgctgcgtgtgttgtgaaggacagatctatcgattcccgaaatcatgatcagcaatacaacaattggctgacggcacagcagcgtcatgacatcatctgattaatattcatttatccatgtgagcaaaattacatcaaattagcagtaaacagtttgttaaatatgacacccAATAACTTCCCAtgtttgttgtgagctgcaggctttacactttcatgtgtcaagagtattcatcatttACTActatgcatatcaatgtattttgttctacatttagaaaagattgtctttatttttactaatcggcgtaaggaataactataaattaaataaaaaaaaaaaaaacagtttgatatCAGTAAAAGTGTCAATTACCAGCATATTAGTGATCAAAACaggtgcatgactgcataaattgtccttttttttttttttaaagttgaatattgtgcatgtacacGTTTGCATGCACTTTTTTGAtgaccagccactgtggctagtagatttccaacattactagccacttgccattttcactggCCACAATTTTGTCAtctcatattaaagaaatgttattgtaaaggatgataattaaactatattaacataaataactgtaagcaaaagaaagcaggtaaaaacctACCACGAGTGATAATGACAGGATGATCATGTCCCAgagaataattaaaacgaaagcaTTGACTGCTGctgttt

Function

symbol description
mrps9 Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of mitochondrial small ribosomal subunit. Orthologous to human MRPS9 (mitochondrial ribosomal protein S9).

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005763 mitochondrial small ribosomal subunit cellular_component
GO:0005840 ribosome cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko03010 Ribosome
ko03011 Ribosome

ZFIN:

id description
ZDB-GENE-060825-257 Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of mitochondrial small ribosomal subunit. Orthologous to human MRPS9 (mitochondrial ribosomal protein S9).

Ensembl:

ensembl_id ENSDARG00000061505

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00062513 True 3134 mRNA 0.40 11 14980761 15029092

Neighbor

gene id symbol gene type direction distance location
XLOC_031927 pou3f3b coding upstream 23373 14949950 ~ 14957388 (+)
XLOC_031926 tmem182b coding upstream 668150 14301214 ~ 14312611 (+)
XLOC_031924 ptprnb coding upstream 993022 13920479 ~ 13987739 (+)
XLOC_031925 dre-mir-153b coding upstream 999669 13980945 ~ 13981092 (+)
XLOC_031923 dnpep coding upstream 1060367 13896264 ~ 13920394 (+)
XLOC_031929 dph3 coding downstream 98415 15127507 ~ 15131196 (+)
XLOC_031930 nck2b coding downstream 116031 15145123 ~ 15246534 (+)
XLOC_031931 si:ch73-23l24.1 coding downstream 221580 15250672 ~ 15259419 (+)
XLOC_031932 ecrg4b coding downstream 239593 15268685 ~ 15300140 (+)
XLOC_031933 NA coding downstream 276673 15305765 ~ 15308585 (+)
XLOC_031917 NA non-coding upstream 1632525 13344675 ~ 13348236 (+)
XLOC_031915 NA non-coding upstream 1713618 13260082 ~ 13267143 (+)
XLOC_031897 AL929243.2 non-coding upstream 3206029 11774617 ~ 11774732 (+)
XLOC_031889 BX548046.3 non-coding upstream 3962229 11018416 ~ 11018532 (+)
XLOC_031935 CR956630.1 non-coding downstream 514963 15544055 ~ 15544170 (+)
XLOC_031937 CR759882.1 non-coding downstream 866542 15895634 ~ 15902635 (+)
XLOC_031938 CR847983.1 non-coding downstream 909529 15938621 ~ 15940105 (+)
XLOC_031939 NA non-coding downstream 961843 15990935 ~ 15993964 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000024_00871953_00893156 MRPS9 coding CI01000024 null 871689 ~ 893156 (-)