XLOC_031929 (dph3)


Basic Information

Item Value
gene id XLOC_031929
gene name dph3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 15127507 ~ 15131196 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00062514
TGGATGCCACGTCAAATTTGTGCGACACTAGATGTAACAGCGGGCGCACGTTGAATCAGCACCGGCGAAGACTTCTAACATGACGGTTTTTCACGACGAGGTCGAAATAGAAGATTTTGAGTACGATGAAGAAACAGAAACATATTATTTCCCTTGTCCTTGTGGCGACAGATTCGCGATAACAAAGgagGATCTTGAGAATGGTGAAGAAGTGGCCACCTGTCCAAGCTGTTCGCTAATAGTAAAAGTAATTTATGATAAGGAGCAGTTCATGTGTGGGGAAGTAATTGAAGCACCAAAAACATCAGAAAACAAACTGGAGTTGGCTCAGAGCTGAGACGCTGATATGACTCCTTCAACTGATAATGGACTGTCATTTCACACTCACTCACTACATATGCAGATGTTTTCTGAAGAAACCGACTGGATCTCATGGACTTGATATATTTAGCGCCAGAATTTTGCACATTAACTACTATTCTTTtcaagatatttatttttttagaaacttTTAAATATATGCTGTGTTCTTGTTGCAAAATAAACGCACAGGAA

Function

symbol description
dph3 Predicted to enable metal ion binding activity. Predicted to be involved in peptidyl-diphthamide biosynthetic process from peptidyl-histidine and tRNA wobble uridine modification. Predicted to be active in cytosol and nucleus. Orthologous to several human genes including DPH3 (diphthamide biosynthesis 3).

GO:

id name namespace
GO:0002098 tRNA wobble uridine modification biological_process
GO:0017183 peptidyl-diphthamide biosynthetic process from peptidyl-histidine biological_process
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function

KEGG:

id description
ko03016 Transfer RNA biogenesis
ko03012 Translation factors

ZFIN:

id description
ZDB-GENE-050522-545 Predicted to enable metal ion binding activity. Predicted to be involved in peptidyl-diphthamide biosynthetic process from peptidyl-histidine and tRNA wobble uridine modification. Predicted to be active in cytosol and nucleus. Orthologous to several human genes including DPH3 (diphthamide biosynthesis 3).

Ensembl:

ensembl_id ENSDARG00000043360

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00062514 True 555 mRNA 0.40 3 15127507 15131196

Neighbor

gene id symbol gene type direction distance location
XLOC_031928 mrps9 coding upstream 98415 14980761 ~ 15029092 (+)
XLOC_031927 pou3f3b coding upstream 170119 14949950 ~ 14957388 (+)
XLOC_031926 tmem182b coding upstream 814896 14301214 ~ 14312611 (+)
XLOC_031924 ptprnb coding upstream 1139768 13920479 ~ 13987739 (+)
XLOC_031925 dre-mir-153b coding upstream 1146415 13980945 ~ 13981092 (+)
XLOC_031930 nck2b coding downstream 13927 15145123 ~ 15246534 (+)
XLOC_031931 si:ch73-23l24.1 coding downstream 119476 15250672 ~ 15259419 (+)
XLOC_031932 ecrg4b coding downstream 137489 15268685 ~ 15300140 (+)
XLOC_031933 NA coding downstream 174569 15305765 ~ 15308585 (+)
XLOC_031934 tmtops2a coding downstream 241957 15373153 ~ 15447996 (+)
XLOC_031917 NA non-coding upstream 1779271 13344675 ~ 13348236 (+)
XLOC_031915 NA non-coding upstream 1860364 13260082 ~ 13267143 (+)
XLOC_031897 AL929243.2 non-coding upstream 3352775 11774617 ~ 11774732 (+)
XLOC_031889 BX548046.3 non-coding upstream 4108975 11018416 ~ 11018532 (+)
XLOC_031935 CR956630.1 non-coding downstream 412859 15544055 ~ 15544170 (+)
XLOC_031937 CR759882.1 non-coding downstream 764438 15895634 ~ 15902635 (+)
XLOC_031938 CR847983.1 non-coding downstream 807425 15938621 ~ 15940105 (+)
XLOC_031939 NA non-coding downstream 859739 15990935 ~ 15993964 (+)

Expression


Co-expression Network