XLOC_031930 (nck2b)


Basic Information

Item Value
gene id XLOC_031930
gene name nck2b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 15145123 ~ 15246534 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00062515
GCAGCGGAGTTCCTACAGGGCCTGCGAACGGAGGACTGAGGACAACGAAAAGCACGCTGAACGGGATTTTCCAGCGCTCTCTTCTGCATGTACCCACGCCGAGGCTAACCGGGAATAAAGGCTGTTTCCACCCGCCTCTCTTCGCTTCTCCAGATTCGTCCTGAGGCAACCTGTAAAGAGGGACTCCATGAAAGATGTCAGAGGAGGCGATTGTTATTGCCAAGTGGGACTATACGGCACAACAAGACCAGGAACTTGACATCAGGAAAAACGAGCGTCTGTGGCTCCTGGATGATTCAAAAACATGGTGGAGAGTACGAAATACGTCCAACAGAACGGGTTATGTTCCTTCCAATTACGTTGAACGCAAGAACAGTCTCAAGAAAGGATCTCTGGTGAAAAATCTCAAAGATACACTCGGCCTGGGAAAAACGAAGCGTAAAACTAGCACACGGGAAGCCTCTCCAACACCCAGCACAGATGAGTACTCATCTAATGGAGGAGGAGCCGAACGAATATATGACCTGAACACTCCGGCCATAGTCAAGTTTGCCTATAATGCAGAACGAGAGGACGAGCTCAGTCTGGTCAAGGGGTCCCGGGTGATGGTGATGGAAAAATGCAGTGACGGCTGGTGGAGGGGCAGCTATAGTGGTCAGATGGGCTGGTTCCCCTCCAACTACGTCCAGGAGGAGGAGATGGAGGACACGTCGGCTGACCTTCCAGCTGTCTTCTCCTCACAGCCGGGCCTCAGTAATGGCCAGAGCTCCAGAGTGCTTCACAGTGTTCAGACGCTTTACCCTTTCAGCTCCGTCACGGAGGAGGAGCTGAACTTTGAGAAGGGCGAGATAATGGAGGTACTGGAGAAACCAGAGAACGACCCAGAGTGGTGGAGGTGTAAGAACTGCCGTGGGCAGGTGGGTCTGGTGCCAAAGAACTATGTGGTTGTGCTCAACGATGGTCCATTATCGACAGCCTCAGGCTCACATTCCCAGCAGAACAGCCACACGGGACCATCCCACACAGGGCTGTTCGCCGGAAAAGACTGGTACTATGGGAGCGTGACACGACACCAGGCTGAGTGTGCGCTGAATGAGAGAGGGGTGGAGGGAGACTTCCTCGTGCGGGACAGCGAGTCCTCTccGAGTGATTTCTCAGTGTCTCTGAAAGCAGTCGGGAAGAACAAACACTTCAAGGTGCAGTTATCCAACGAAGTTTACTGTATCGGTCAGCGGCGCTTCAACAGTATGGATGAACTCTTAGAGCACTACAAGAAAGCTCCCATCTTTACCAGCGAACATGGCGAGAAGCTTTACCTTATCAAACCCCTCCAGTGACCTTCCACACACAAATGAGCCTTACAACCAGACCTCACCCGAGCCAAGAGATCTGCAACTCCTACTAAACGCTCATTTATTACCAGCAAACGGGACTTAACACCAACTTAAAGGATTTTACAGAGTAATAATGAGGCGAACTGTCATTTTGGGCCGTGTTTTATGGAGCTGTTCAATTTGGAGTGGTTTACCAAAAATGATTGTCGCCTTTTCCAAGAGATACTTGAGGCACTCGGGCATTGCCTTGACCGACAGTAACTATTCTGCTTATTGACTTTGAGATACAAGGAAAACAGGTGAAAATATAGAGCGTTTGGGCAGCACAATATTCAAGATTGTCAAACGAAAACAGTCAAAAGTGGAAGTACAAGAAACTGTATGTACATAGGAGTTGCCAAAGAGCGAGTTGGTGACAGGTACTCGTCGCCCCCTGCTGGATGAACTGAGAAATGTCAACAGGAGGGTCTTTATGTGATGAATGTTTTTGTAGACGCTTAACCAAATGTGCCACCTTCACATTCAAGCACTGCTCATCTGGTAtatatgtaatttatatataGAAGAACTATATCCACCTCATTCAGATTCACACATCTGTATCGACGTTAAAATGTTTGGTATAGagttattacagcaaaacactgtttGAATTTCGAAACGCTGCAGTTTAAAAAATGGATGGTTGGGTCTGTTTAATAATGAGTCGGCTCATTGAATAGTTTCTGAGCTTTTATAAAAGTATGGTACGCCTGAATGTTACTGAGCATTGTTAtttaaaatcatgtttatttaagcAGAGAATTAAAAGCTGCTGAGAAGAAATGTGTAGTCAGCTCCACCTCCATGATAACTGTGCAAAACGTTGAAATACTTTTGTTTAATTAAAGATTTTGCAAGAGTAA
>TCONS_00062516
AGGGACTCCATGAAAGATGTCAGAGGAGGCGATTGTTATTGCCAAGTGGGACTATACGGCACAACAAGACCAGGAACTTGACATCAGGAAAAACGAGCGTCTGTGGCTCCTGGATGATTCAAAAACATGGTGGAGAGTACGAAATACGTCCAACAGAACGGGTTATGTTCCTTCCAATTACGTTGAACGCAAGAACAGTCTCAAGAAAGGATCTCTGGTGAAAAATCTCAAAGATACACTCGGCCTGGGAAAAACGAAGCGTAAAACTAGCACACGGGAAGCCTCTCCAACACCCAGCACAGATGAGTACTCATCTAATGGAGGAGGAGCCGAACGAATATATGACCTGAACACTCCGGCCATAGTCAAGTTTGCCTATAATGCAGAACGAGAGGACGAGCTCAGTCTGGTCAAGGGGTCCCGGGTGATGGTGATGGAAAAATGCAGTGACGGCTGGTGGAGGGGCAGCTATAGTGGTCAGATGGGCTGGTTCCCCTCCAACTACGTCCAGGAGGAGGAGATGGAGGACACGTCGGCTGACCTTCCAGCTGTCTTCTCCTCACAGCCGGGCCTCAGTAATGGCCAGAGCTCCAGAGTGCTTCACAGTGTTCAGACGCTTTACCCTTTCAGCTCCGTCACGGAGGAGGAGCTGAACTTTGAGAAGGGCGAGATAATGGAGGTACTGGAGAAACCAGAGAACGACCCAGAGTGGTGGAGGTGTAAGAACTGCCGTGGGCAGGTGGGTCTGGTGCCAAAGAACTATGTGGTTGTGCTCAACGATGGTCCATTATCGACAGCCTCAGGCTCACATTCCCAGCAGAACAGCCACACGGGACCATCCCACACAGGGCTGTTCGCCGGAAAAGACTGGTACTATGGGAGCGTGACACGACACCAGGCTGAGTGTGCGCTGAATGAGAGAGGGGTGGAGGGAGACTTCCTCGTGCGGGACAGCGAGTCCTCTccGAGTGATTTCTCAGTGTCTCTGAAAGCAGTCGGGAAGAACAAACACTTCAAGGTGCAGTTATCCAACGAAGTTTACTGTATCGGTCAGCGGCGCTTCAACAGTATGGATGAACTCTTAGAGCACTACAAGAAAGCTCCCATCTTTACCAGCGAACATGGCGAGAAGCTTTACCTTATCAAACCCCTCCAGTGACCTTCCACACACAAATGAGCCTTACAACCAGACCTCACCCGAGCCAAGAGATCTGCAACTCCTACTAAACGCTCATTTATTACCAGCAAACGGGACTTAACACCAACTTAAAGGATTTTACAGAGTAATAATGAGGCGAACTGTCATTTTGGGCCGTGTTTTATGGAGCTGTTCAATTTGGAGTGGTTTACCAAAAATGATTGTCGCCTTTTCCAAGAGATACTTGAGGCACTCGGGCATTGCCTTGACCGACAGTAACTATTCTGCTTATTGACTTTGAGATACAAGGAAAACAGGTGAAAATATAGAGCGTTTGGGCAGCACAATATTCAAGATTGTCAAACGAAAACAGTCAAAAGTGGAAGTACAAGAAACTGTATGTACATAGGAGTTGCCAAAGAGCGAGTTGGTGACAGGTACTCGTCGCCCCCTGCTGGATGAACTGAGAAATGTCAACAGGAGGGTCTTTATGTGATGAATGTTTTTGTAGACGCTTAACCAAATGTGCCACCTTCACATTCAAGCACTGCTCATCTGGTAtatatgtaatttatatataGAAGAACTATATCCACCTCATTCAGATTCACACATCTGTATCGACGTTAAAATGTTTGGTATAGagttattacagcaaaacactgtttGAATTTCGAAACGCTGCAGTTTAAAAAATGGATGGTTGGGTCTGTTTAATAATGAGTCGGCTCATTGAATAGTTTCTGAGCTTTTATAAAAGTATGGTACGCCTGAATGTTACTGAGCATTGTTAtttaaaatcatgtttatttaagcAGAGAATTAAAAGCTGCTGAGAAGAAATGTGTAGTCAGCTCCACCTCCATGATAACTGTGCAAAACGTTGAAATACTTTTGTTTAATTAAAGATTTTGCAAGAGTAATACGTGTCTGCTTGTTTTTTTATAGTTAAGTAACTATATTTTTAAAGAACTCGTATCCTTCTGGATTATGTGtataaagagcacctatttttcctctttttttacaaGATGCAAGGTAAGACTTTGGTGTCTCAGATTAGGGTTGGGCCATATCAACCTATTTGTCAGTGTGCAacgtctaatgtgaaacattttgatggatgatggcatcTTTGTTGTAGGtggcagtgaattaattatttacgAATATTTATATAATTCATAATGAGTTGATTGTTTGTAGGCTActgttttaactacctgacccacatggtctttgttttatccataaccaaatcataaatactttaaaaaagataagttacacacaaattaccacctgtcaatcactttttgcgcgtgactctggcatgaataggcagagtgatctgtgtggTTATACTGGCGCTGACAAACTTGGTTGGCAAAAAagggtgcacaaccaacaggaaccaaccaacattatctgaggtttttgctaaaattactaagtacaatcgtgaaagcaaaagattgaagcagtgaaCTGACACTGTGACATTTTacctaatagattcaaaagactgaagagttgatagagacaagattaattaaatatcaccttTAACGACTATAGTGAGAGgcgatccagtggtacatccctgacaaactgtccgacgtgcactgctctctggggttttgtgctctaAGCACCTGTTGACTGCCTGAAGCTCAGACGTGAAACGCCAGTGTGTGCATAGATCGTTTTCCTTCtacaatgccattttaaaacttagacatattagtgtaaactgggcttaagcatgtatttttcgcgagtgggttgctgctgtgatgggggcggggcagaggatcgcgatgccggcccAGCATTGTCTGTTGAGCCAAACCTACTCCAGAATGTGCCTGTAAAGTTTCAGCCCAAAATACCTATCAGATTAGCTATTACCTAATGTAGAATCTACccgtttttgtttttgtaggAAAAACAGCGCCTCAGTACCGTCCTCGTCAGGGGGGTTGGGTAAAGGGTTAAATCCAAataagctgcttctccccgcccaccgtttccaCGTGCGTGTCCTCTTCTCTTTTGTTACATCAGATGAACAGcagtcagtagctatgttttcatccaaggATGCAAGATGCAAAGATtacatactttatatatataactACATCACATCATCataagatgtgcgaataaagctgcgtttccatccaGTGACTTAAAGAGAACAAagttgtcacttcctgattaactggcgccaaatatcaaaattaaaaatggaatttattgaggtagcagaagctgcatgaatcttttccttatttaataaacgaCTTGGACCTCAGAAGACTATGCCGACATACAGTGAACATGTTGTGgtagttctggaggtcattaataataataccacTAATACTGAAACGCTTAAGGAATAACCAAAACAActattcagatgttttacagtgctcagcctgctggtttgtccatttacacacatttttatcatcatatgatctcttataacataacatgactttttttaatgctaattttttatgcacattttcaaaattgatgcgcatcttgccatttttttatgcacatatccaaaatgtgcacaAAAATTGGTGCATGGAAAGATGGTTAGTAAAAGAAACAAACACGGATGAATCTGAAATGAGGTCATTAGTCAAGtaagattatttgatgtatttgtggtggagattattcaagcctttctgaaatgatgagtctcacacatgccgtttgcagtacacacatacagttgaagtcataattattagcccctctttgattttaaatttttttccccctattaaatatttcccaaacgaagtttaacagagcaaggaaattttcacagtatgtctgataatattttttttcttctggagaaagtcttatttctcttatttcggctagaataaaagcagtttttattaaaaaaaaaaaaaatgttaacgtcaaaattattagccccctttaaactgtatatttttctgactgtctacagaacaaaccatcgttatacaatgacttgccaaattaccttaaagctgtcactttaagctgtatagaagtgtcttgaaaaacatctagtaaaatattatgtactgtcatcacagcaaagataaaataaattagttatcagaaatgagttattaaaactgttatgtttggaaatgtgttgaaaaaatcttctttactttaaacagaagttgggggaaaaataaaatgggaggcttataattcagggAGTCAATAATTCTGcccatttactgacaccatgtggccAAGGTCATTATAGCAGTTAAGCAgttcatatttttcaaaatacaactgGCAGAGCTTACTGCTACTAGATTGGATGACAAATGCCTAATATTATGGACAGCAGGATTTAAATTTGAGAAATCCTCCAGAAGCAAAAAAGGAAATTGACCTGACGTATAATGTTTACTGCAATGGAAGCAGGATCCCAAAAATATTGCAAATTAATATAACTGTTTCCTgctttatattttgaaatataagttATTCCAATGATTGTAATGCtaaatatttaaagggcaccaatgatgaaaatcatcttttgtaagctgtttggacagaactgtgtgtaggtatagtgtcttCTGTCATATTGGGGCGATGTacagacaataagtctcttttttttatttttctgacatCAAAATAgtatccaaatccctcccatatTGAGGCCCAATGCAATGTGATGCAGGAGTGCGgtctccccacccaccgaattgattgacaacATATTACAACTTCATACTAACGCATTTAATCatccacaagacaggatttgTGCAAAGCAAATctggattaaaagatctgttcagctctctgtgatcatcaatcatcatcaaatgtgaccaAGAATTACTTTTAccagtttaaaacgtttttaagaAATTATAgggatttacttcagctttatcACCACAGGCGCAAGTCAGTGCAATTATTAAAGATGACACTTCAACCCCAGTtagtggatgttaaatcaggtttattttgtacattaacataacggatgtatcctgtcacaaacattaaacaaattt

Function

symbol description
nck2b Predicted to enable receptor tyrosine kinase binding activity and signaling adaptor activity. Predicted to be involved in several processes, including cell migration; regulation of response to endoplasmic reticulum stress; and regulation of translation. Predicted to act upstream of or within regulation of translation. Predicted to be located in cytosol and endoplasmic reticulum. Orthologous to human NCK2 (NCK adaptor protein 2).

GO:

id name namespace
GO:0006417 regulation of translation biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-040801-235 Predicted to enable receptor tyrosine kinase binding activity and signaling adaptor activity. Predicted to be involved in several processes, including cell migration; regulation of response to endoplasmic reticulum stress; and regulation of translation. Predicted to act upstream of or within regulation of translation. Predicted to be located in cytosol and endoplasmic reticulum. Orthologous to human NCK2 (NCK adaptor protein 2).

Ensembl:

ensembl_id ENSDARG00000043361

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00062515 False 2239 mRNA 0.47 4 15145123 15243369
TCONS_00062516 True 5226 mRNA 0.40 3 15210072 15246534

Neighbor

gene id symbol gene type direction distance location
XLOC_031929 dph3 coding upstream 13927 15127507 ~ 15131196 (+)
XLOC_031928 mrps9 coding upstream 116031 14980761 ~ 15029092 (+)
XLOC_031927 pou3f3b coding upstream 187735 14949950 ~ 14957388 (+)
XLOC_031926 tmem182b coding upstream 832512 14301214 ~ 14312611 (+)
XLOC_031924 ptprnb coding upstream 1157384 13920479 ~ 13987739 (+)
XLOC_031931 si:ch73-23l24.1 coding downstream 4138 15250672 ~ 15259419 (+)
XLOC_031932 ecrg4b coding downstream 22151 15268685 ~ 15300140 (+)
XLOC_031933 NA coding downstream 59231 15305765 ~ 15308585 (+)
XLOC_031934 tmtops2a coding downstream 126619 15373153 ~ 15447996 (+)
XLOC_031935 CR956630.1 coding downstream 297521 15544055 ~ 15544170 (+)
XLOC_031925 dre-mir-153b non-coding upstream 1164031 13980945 ~ 13981092 (+)
XLOC_031917 NA non-coding upstream 1796887 13344675 ~ 13348236 (+)
XLOC_031915 NA non-coding upstream 1877980 13260082 ~ 13267143 (+)
XLOC_031897 AL929243.2 non-coding upstream 3370391 11774617 ~ 11774732 (+)
XLOC_031889 BX548046.3 non-coding upstream 4126591 11018416 ~ 11018532 (+)
XLOC_031937 CR759882.1 non-coding downstream 649100 15895634 ~ 15902635 (+)
XLOC_031938 CR847983.1 non-coding downstream 692087 15938621 ~ 15940105 (+)
XLOC_031939 NA non-coding downstream 744401 15990935 ~ 15993964 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000024_00766380_00783144 NCK2B, NCK2 coding CI01000024 null 765081 ~ 784256 (-)