XLOC_031931 (si:ch73-23l24.1)


Basic Information

Item Value
gene id XLOC_031931
gene name si:ch73-23l24.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 15250672 ~ 15259419 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00062517
GACGAGTCCAGGAAAAGCTGCTGCAGTTGGAGAACATGTTTCGTCTGGGTTTctcagttcttctgtgtgtggtTTGGCTTGGACTGCTCTGtcttacaggggCAGTGGAAAACCAAGATGAATCAAGGGAAAAAAGGAGCGTGCCGAACTGGGCCATGACATCTTCAGACTTTTTCGGCTGGATTGAAGAACTGCGTTCTCATGCTGGTTATGACAAGATGGAGGAATTGGCCAGAACCTTCTGGGCTCACTTTCCTTCTGCTTGCCGACTAGGTTATGACCCTCCGGCTCCAGAAGAATAATGCCATCTGAGTCTGAATCTGTGTTATTTGCCCCTTTCATCATGGCACGGCTTGtggaaaaagaaacaaacagTCTTTATTATTCAGCTAGACTTGATTTGATCCAGGACTAGATTCCCTGAGAGAGgttcaatttattttttgatttttttttttttgggaggttAAATGTTACGTAAAACATGTTGTGTAACAGCATCCAGAATCCAGTAAAAGCGCTCTTTTCACAAA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000096905

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00062517 True 533 mRNA 0.44 4 15250672 15259419

Neighbor

gene id symbol gene type direction distance location
XLOC_031930 nck2b coding upstream 4138 15145123 ~ 15246534 (+)
XLOC_031929 dph3 coding upstream 119476 15127507 ~ 15131196 (+)
XLOC_031928 mrps9 coding upstream 221580 14980761 ~ 15029092 (+)
XLOC_031927 pou3f3b coding upstream 293284 14949950 ~ 14957388 (+)
XLOC_031926 tmem182b coding upstream 938061 14301214 ~ 14312611 (+)
XLOC_031932 ecrg4b coding downstream 9266 15268685 ~ 15300140 (+)
XLOC_031933 NA coding downstream 46346 15305765 ~ 15308585 (+)
XLOC_031934 tmtops2a coding downstream 113734 15373153 ~ 15447996 (+)
XLOC_031935 CR956630.1 coding downstream 284636 15544055 ~ 15544170 (+)
XLOC_031936 iqca1 coding downstream 503228 15762647 ~ 15893049 (+)
XLOC_031925 dre-mir-153b non-coding upstream 1269580 13980945 ~ 13981092 (+)
XLOC_031917 NA non-coding upstream 1902436 13344675 ~ 13348236 (+)
XLOC_031915 NA non-coding upstream 1983529 13260082 ~ 13267143 (+)
XLOC_031897 AL929243.2 non-coding upstream 3475940 11774617 ~ 11774732 (+)
XLOC_031889 BX548046.3 non-coding upstream 4232140 11018416 ~ 11018532 (+)
XLOC_031937 CR759882.1 non-coding downstream 636215 15895634 ~ 15902635 (+)
XLOC_031938 CR847983.1 non-coding downstream 679202 15938621 ~ 15940105 (+)
XLOC_031939 NA non-coding downstream 731516 15990935 ~ 15993964 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000024_00758857_00762162 NA coding CI01000024 null 758598 ~ 763779 (-)