XLOC_031933


Basic Information

Item Value
gene id XLOC_031933
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 15305765 ~ 15308585 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064823
cttGAAGTGCAACATTTTGAATGAAATGTGAATAAAATTGTTGTAAAATACATTTGGTCTCCAAACACATTTTCACAGAAACCCAGGTTTGCATAAGCAACCGCACACACATAATGGTATTgtagtttatgaggactctctatAGGCATAATGCACTTTATACAGTGCTTATTATATGCCCTGAACACTAAAAGCAACCCTCAACCTGTGGTATATTATGAACGTGAAAAGATTTCAACATTATGTGATCGAGTACACCCAGGACACACCCATGCAATTATAAAATGTCTGTCCTTGTagaccaccaaaaccagtacataCAGATATTCTCAAAAAGATATCAACTGAATATAGATAAACATGAGTGATTTAACTGCTAAATGAATGGCGCTCTAGATTAGCAGATGTAATGATTTCATAACTCTATTCATATGGAGGACATTTGAGGTTGAGGCCAGTGTGCTGGAAATGTGAAAATGTCCTATAAAGACTACTAAGGAACAGAGGACAATGAACAGCCATGACATTAACTTGAAAAGACATATTGCTCTCCCAAATTCAGTTACAGAGGAAGTTTCTTTCAAACACCATGATTCATATTTATAAAGGTGCCATAGAGTGAATTGATTCAATGAGTTTTATTGTCCTCTGTTATCTATTGTACATAGTAGGCATGTGGCAAATATAATTGCAAAGTCTACAGAAtgggtttattttctcttttataaCACCTGAAATTTCCTCTGGATTGAAACTCTACCTTTACTCAGAAATACACGTGCAATATGATCATTCACTTgtcaaaaacatttaacaaattgTGGAGATGCCTTGTTAAATCTTTTCAACTGAAGTGGTGGAGAGGTTTATTGTAGCTGGAAGTGCTCCAGGGAGTTATCTTTAAAAAATTGGCTAAATTATAGCTATACTCGACAAACAGGAtagacagaaatgtatttagagtTGTATATTTAAGCTGTACtgcatataaaaaaatcaatCTCTGAATAAACTGATGAGTTTTATAAAGTTTACTGGTGTCCTCACACTCAATAGAAATCACAGTAAGTGCTGACATTACGTTAACATTAATGTACATTATTAtacggctgtctggaatacttgattctaatTGGTCTATCaagacattccaaggtatgttatttccagataacaaccactgaaacTAACACAAGCTCATTCATATATCTAGAATCATCTTGACTTTCAGTGATACGTTTACAtcttccaacataggctcattctaaaaacgtagccctactgtatatacatttctggagatcgcacaTTATGTAGCCAGAACAATGAATGGCTGCATCTTTCAAATGTCCTCTATAGACTACTAATAAATAGAGACAtgacatgaatttaaaaaatgcatattgCTCTTTCAAATTCAGCTGAAGAGAAAGTTTCTTTAAAACATCATGACTAATTTGTAAGGGTGTCATATGAGTGAACTGATTCAATGAGTTAAATTTAATCTACTGTACATAGAAGGTATGTGGCACATAATTGCAAAAAGTCTACAGAAAGGGTTTACATGCTCTTTTATGACACAAAAAATTAACCCTAGAATGAAACTCGACTCTTTACTCagaaataaacaagcaaaatgaGCATACTTCATTTATCAGATACATTTAACAAGATACCTTTTTAAATCATTTCAGCTAAAGTGATGAAGAGGTTTATTATAGCTGGATGTTATCCAGTGGGTTATTTTTGAAAAATAGGCTAAACTATAGCTATACTCAACAAACAGGacatacagaaatgtatttacaGTTGTATATTGAAGCTTTACTGCATTCGAAAATGTCAATCTCTGaataaacagatgagttttataAAGTTTACTGGTTCCCTTTCACTCAGTAAAAAGAGCCGACGTAACATTAATGATAAAGTTCATTATCATAAAGCTGGAATACTTGATTGTAGTTGGTCAGTCaagacattccaaggtatgttatttccAAATAACAACCATTGAAACTactaacacaggctcatccatACATTTAGAATCATCTTGATTTTCAGTGATACTTTTTACAtcttccaacataggctcattctgaaaacgtagccctatatacttcTCTGGAATTTGcaatttatgtagccagagctacatatcgCTGCATTTCGCCTTCCATTGAACAATACGGGACGGTAtgatcagtgcttaatttgttcattttactgatcccccttcTCAATCGCCCTCCTCCCGCATCTGCTGttaactttcactttcttccgtgacTCCTCAAcactcttcacttttgtctgcgacaacccctgctcttcactttcgtcctttGTCCGCGACACCCCTCCACCATTCAAAGGGATTGTGATATAATCTGAAAATATGGTAAGAATCGGTGGTTGTATTTAGAGAAGTGGGCAACGGggatcggtcagtcattcagtcagttgactgtggcctctggtggatttacatgggAAGAGCAGGTGTGAATAGCGCAtgcgagagacatttgaggtctcaaaaagcattcacagcagcctctggcggatccatgaaaacaaaaactgcaaaaaacatagctcctgtgAAGTATTTTGctttcttcagaaatgtatataggggtacgtaatcagaatgaacctgggttgacaTCTTTTACATGCTTGTCATGCTTTATGTTGTTGCGATCTTGTTGTTGACTTGATCTAATGACTAAATAATtagtaggttagtgtatgcttctttttgccatttttgtttCTTTCAGCTTTGcgtttaattgaataattaataaactag
>TCONS_00064824
CCAGGACACACCCATGCAATTATAAAATGTCTGTCCTTGTagaccaccaaaaccagtacataCAGATATTCTCAAAAAGATATCAACTGAATATAGATAAACATGAGTGATTTAACTGCTAAATGAATGGCGCTCTAGATTAGCAGATGTAATGATTTCATAACTCTATTCATATGGAGGACATTTGAGGTTGAGGCCAGTGTGCTGGAAATGTGAAAATGTCCTATAAAGACTACTAAGGAACAGAGGACAATGAACAGCCATGACATTAACTTGAAAAGACATATTGCTCTCCCAAATTCAGTTACAGAGGAAGTTTCTTTCAAACACCATGATTCATATTTATAAAGGTGCCATAGAGTGAATTGATTCAATGAGTTTTATTGTCCTCTGTTATCTATTGTACATAGTAGGCATGTGGCAAATATAATTGCAAAGTCTACAGAAtgggtttattttctcttttataaCACCTGAAATTTCCTCTGGATTGAAACTCTACCTTTACTCAGAAATACACGTGCAATATGATCATTCACTTgtcaaaaacatttaacaaattgTGGAGATGCCTTGTTAAATCTTTTCAACTGAAGTGGTGGAGAGGTTTATTGTAGCTGGAAGTGCTCCAGGGAGTTATCTTTAAAAAATTGGCTAAATTATAGCTATACTCGACAAACAGGAtagacagaaatgtatttagagtTGTATATTTAAGCTGTACtgcatataaaaaaatcaatCTCTGAATAAACTGATGAGTTTTATAAAGTTTACTGGTGTCCTCACACTCAATAGAAATCACAGTAAGTGCTGACATTACGTTAACATTAATGTACATTATTAtacggctgtctggaatacttgattctaatTGGTCTATCaagacattccaaggtatgttatttccagataacaaccactgaaacTAACACAAGCTCATTCATATATCTAGAATCATCTTGACTTTCAGTGATACGTTTACAtcttccaacataggctcattctgaaaacgtagccctatatacttcTCTGGAATTTGcaatttatgtagccagagctacatatcgCTGCATTTCGCCTTCCATTGAACAATACGGGACGGTAtgatcagtgcttaatttgttcattttactgatcccccttcTCAATCGCCCTCCTCCCGCATCTGCTGttaactttcactttcttccgtgacTCCTCAAcactcttcacttttgtctgcgacaacccctgctcttcactttcgtcctttGTCCGCGACACCCCTCCACCATTCAAAGGGATTGTGATATAATCTGAAAATATGGTAAGAATCGGTGGTTGTATTTAGAGAAGTGGGCAACGGggatcggtcagtcattcagtcagttgactgtggcctctggtggatttacatgggAAGAGCAGGTGTGAATAGCGCAtgcgagagacatttgaggtctcaaaaagcattcacagcagcctctggcggatccatgaaaacaaaaactgcaaaaaacatagctcctgtgAAGTATTTTGctttcttcagaaatgtatataggggtacgtaatcagaatgaacctgggttgacaTCTTTTACATGCTTGTCATGCTTTATGTTGTTGCGATCTTGTTGTTGACTTGATCTAATGACTAAATAATtagtaggttagtgtatgcttctttttgccatttttgtttCTTTCAGCTTTGcgtttaattgaataattaataaactag

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0048731 system development biological_process
GO:0022407 regulation of cell-cell adhesion biological_process
GO:0022408 negative regulation of cell-cell adhesion biological_process
GO:0048468 cell development biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0030154 cell differentiation biological_process
GO:0014855 striated muscle cell proliferation biological_process
GO:0014856 skeletal muscle cell proliferation biological_process
GO:0048513 animal organ development biological_process
GO:0014857 regulation of skeletal muscle cell proliferation biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0030182 neuron differentiation biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0019857 5-methylcytosine metabolic process biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0048589 developmental growth biological_process
GO:0048869 cellular developmental process biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0033002 muscle cell proliferation biological_process
GO:0008283 cell population proliferation biological_process
GO:0040007 growth biological_process
GO:0006211 5-methylcytosine catabolic process biological_process
GO:0007399 nervous system development biological_process
GO:0061061 muscle structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0060537 muscle tissue development biological_process
GO:0014706 striated muscle tissue development biological_process
GO:0022008 neurogenesis biological_process
GO:0048699 generation of neurons biological_process
GO:0007162 negative regulation of cell adhesion biological_process
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0045111 intermediate filament cytoskeleton cellular_component
GO:0005853 eukaryotic translation elongation factor 1 complex cellular_component
GO:0005882 intermediate filament cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0070579 methylcytosine dioxygenase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064823 False 2821 lncRNA 0.35 1 15305765 15308585
TCONS_00064824 True 1726 lncRNA 0.37 2 15306023 15308585

Neighbor

gene id symbol gene type direction distance location
XLOC_031932 ecrg4b coding upstream 5625 15268685 ~ 15300140 (+)
XLOC_031931 si:ch73-23l24.1 coding upstream 46346 15250672 ~ 15259419 (+)
XLOC_031930 nck2b coding upstream 59231 15145123 ~ 15246534 (+)
XLOC_031929 dph3 coding upstream 174569 15127507 ~ 15131196 (+)
XLOC_031928 mrps9 coding upstream 276673 14980761 ~ 15029092 (+)
XLOC_031934 tmtops2a coding downstream 64568 15373153 ~ 15447996 (+)
XLOC_031935 CR956630.1 coding downstream 235470 15544055 ~ 15544170 (+)
XLOC_031936 iqca1 coding downstream 454062 15762647 ~ 15893049 (+)
XLOC_031937 CR759882.1 coding downstream 587049 15895634 ~ 15902635 (+)
XLOC_031938 CR847983.1 coding downstream 630036 15938621 ~ 15940105 (+)
XLOC_031925 dre-mir-153b non-coding upstream 1324673 13980945 ~ 13981092 (+)
XLOC_031917 NA non-coding upstream 1957529 13344675 ~ 13348236 (+)
XLOC_031915 NA non-coding upstream 2038622 13260082 ~ 13267143 (+)
XLOC_031897 AL929243.2 non-coding upstream 3531033 11774617 ~ 11774732 (+)
XLOC_031889 BX548046.3 non-coding upstream 4287233 11018416 ~ 11018532 (+)
XLOC_031939 NA non-coding downstream 682350 15990935 ~ 15993964 (+)
XLOC_031941 NA non-coding downstream 1086044 16394629 ~ 16397525 (+)

Expression


Co-expression Network