XLOC_031937 (CR759882.1)


Basic Information

Item Value
gene id XLOC_031937
gene name CR759882.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 15895634 ~ 15902635 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00062524
GAAAAAAACAGTTCACTGCGTTTTTTACCGCGTTTCTTTGATGCCAGTTTTGCCTTCTACTGACACATCAATGGCGAACAGCTCAACAGaaacacaaCCAAACAACAAGAAGAATAGCCTGTGTGCTTTCTTCAGAATGAAATGTTTGGCTTTACAAAAAGCCAATCGGCGTCGACGTCGAGGCAATAAAGTGTCTTTTTCACAGCCTCCGTCTGACACAGAACCCGTGGGTCCACAGCCAGGCCCATCAACAGATAATCTTCAGTCTGCTCTGTCCAGCTTTGAGTCTCAGGCTGTAGACGATCAGCGGGATCTTCTGCTTGGTCTGTCCAGCATCGAGCCTCTGGCTGTAGACGACAAGACTGATCTTCAACCTGGTCCATCCAGCAACAAGCCATCAAACTTTTCTGAAGGAAACAAAGCCAATCCAGAGCCTGCTGAAGAAACTCAACCAAAAAGCAAGAAGAGCAGGCTTTGTGCATTCTTCAAGAACATATGGCTGACTGTACAAAAAGCCAATCAGAGTCAACGTCGAGGCAGTAAAGTGTTTCCTTTTCAGCCTCCGTCTGACACAGAACCAGTGGGTCCACAGCCAGGCCCATCTAATTTCAAGACAACATCTGTACAAGATTTGTCTGGTCTTCAGCCTGCTCTGTCCAGCTTCGAGTCACTGCCTGTAGATGATCAGCATGATCTTCAGCTTGGT
>TCONS_00064609
TTCACAAACCTACGACAGAAAGGAACATACGTACAGAAAGACAACCTTCTCAAGTATTTCTACGCTATCTCCAACATCGACATaccagctcacacacacacacacacacacacacacataaggtgatgtaatgtttattgtaaaatattcaatgATTTAGTTCAAGTTAAAGAAAGTAATTGTAGTAACTGGCAATCTTTGTGGTTCTTTTCAGAAACTCAACCAAAAAGCAAGAAGAGCAGGCTTTGTGCATTCTTCAAGAACATATGGCTGACTGTACAAAAAGCCAATCAGAGTCAACGTCGAGGCAGTAAAGTGTTTCCTTTTCAGCCTCCGTCTGACACAGAACCAGTGGGTCCACAGCCAGGCCCATCTAATTTCAAGACAACATCTGTACAAGATTTGTCTGGTCTTCAGCCTGCTCTGTCCAGCTTCGAGTCACTGCCTGTAGATGATCAGCATGATCTTCAGCTTGGTCTGTCCGGCCTTGAGTCTCTGGCTGTAGACAATCAGACTCATCTTGAGTCTGCTCTGTCCAGCCACGAGCCTCTAGCTGCAGATGATCGAACTGATCTTCAGCTTGGTCTGTCCAGCCATGAGCCTCTAGCTGTAGACGATCGAACTGATCTTCAGCTTGGTCTGTCCAGCCATGAGCCTCTAGCTGCAGATGATCGAACTGATCTTCAGCTTGGTCTGTCCAGCCATAAGCCTCTAGCTGTAGACGATCAGAGTGATTTTCAGCTTGGTCTGTCCGGTCTTAAGTCTTTGGCTGTAGACGATCAGACTCATCTTCATTCTGGTCCTACCAGCAATAAGCCAGCAAACTTTGAAGCTAACCCAGCCAATCCAGAGCCAGCTAAAGaaaaaacaacaacaaagaagaaGAGGAGTTTCTATACATTCTTTAAAAAACTGTGGCTACACAAGAAGCACAATGTGGTTAATCCACAGACAGACAAAGGTTCAGCTGCTTCAAAGCCAAATCCACACACTCCTCAGCAAGATCAACCAACATCTGAGCCAGACCCACCAACATCTGAGCCAGACCAAGCCATTCCTGAGTCAGAGCCACCAACATCTGAGCCAGACCCACCAACATCTGAGCCAGACCCACCAACATCTGAGCCAGTCCCACCAACATCTGAGCCAGACCCACCCAGTCCTGAGCCAGATCCACCAACATCTGAGCCAGATATACCCATTTTTGAGCCACATCCACCTGTTGCAGAGCCTGATTCACCGATTCCTGAGCCAGTAGTTAAATTTGATCTggatgatcaaacagacaatttCTCAGAAGATTCCCAGCCTTTTTTGCCCAAGATTGCTCGAGCTGCTCCCAAGCACAAGCGTCTTGGAGATAAAaaatggttgagaaccactgcatcgCCAGGTCCATCTAATCTTCCATTTTCTGCAGTTTATGAAATTGGAGAGAAGCTTGGAAGAGGAAGCTTCGGTGATGTGTTTGTGGGGATCCACAAACAAAATCAGCAACAGGTTGCCATCAAATTTGTGAACAAGTTAAAAACAGACCAGTATATCACAGTTCCTGGGCTTTACGAGCCAATGTTGGCAGAAGTGGCATTAAACCTGCTGCTAAATCAACAGCCGATAAGCCCTTACGTTGCGCACATGATAGACTGGTTTGATGAGGAACAACGGTACATACTCATCATGGAGTATTCACAACCCAGCGAGAACTTGCTCACGTTTATCAGTCGCAAAAGGCCAATGAAGGAATTTGAGGCACGAGGCCTGTTGTACCAAGTGTTGCTCGGAACCAAGCACTGTCTGGACAGAGGTGTCTTCCATCGTGACATCAAGTTAAACAACTGTGTGATCAACACCGAGACACAACAAGTCAAACTGATAGACTTTGGCTGTGGTGAACTCCTTAAAAGTGTCTATGTGGGTGGATTTACTGGAGGATGCTGCCCACCAGAGTATGTTGCAACCCTAACATATCGGGCGGACCCAACAACGGTGTGGTCGCTGGGCTACCTGATGTACAAAACGATGTGTGGCTTTTACCCCTTTAAATCACTAGAAGACATGCAGAACTGCAGTCTGACTTTTCCGTTCGGCATATCCAGTGCATTCCAGGATTTGGTCTCGAGGTGCCTGATTTGTGATCCAACCAAGAGAATCACTGTAGATGACATCTTAAAGCACGAGTGGTTTCAGCAAATGCCAGGAGCAGGAGTCAGcaaaaCTTCATGAACCAGCGTTGAAACAGTCTTCAAGCAAGCAAAGTCTAAAGGGATATCTCCTCTTTTAATAAAGAAGAATATTACAGATGTTTTAGCTCAGTCTAAGGTCCTTGTTGATTGTCTTGCAAGTCAATAGTTACTGCTTTTTGAGATTTGAGACATCCAAACAAATCCAAATCAATAGTGGCTCCTGACGGTAGACTTCTTATACAGCGAAATGGTCtgtgcaaaaaaattatttagaatattTTCAGCTGTATACATATAGgagtaatttaaaaatgtaattgtgcCTCTTAGTGTAATCTAAAATGTTTATAATGGTTGTCGTATCCAGGATCCGCATTCTGTGTAACACACTGAACCGGCCTGATCTGGCCAGTAACAATCCAGCTCCAGGCCATCAGGCGGTCCTTCATGTCGTTCCCTGCTGAATATAACACATTGCTGTCGCAAACACATGTAACCCCCATAGCACATCTaaacaggtggagctggggtggaggagggaaAAGATTTGTAGCACTAAGAATGCATTTAAATGTTGAGGCAACAGTAACCAAATCACTTGCGCCAAGTAGTTGATAACATAGCAGGCGAATAACTTTATATTTCTTTCATGACAACACTGAGAGATTTAGTAGGATAATTAATAAtgtatatggcaatgttgatgtgtttggtcttggcAGCATTGATCTACACAACGTCGCGAAACAAAAAGAGTAACTATTAGTAACTTCCATTACATGAATCACTAAGGACCTTAGATTCAGCTAAGAATGTTGGCATGAgtgtgtaaattaacagctaaTTTAATGTttggtgaacgatccctttaaaggACTAAGACTCACCAAGCTGATGGTCAACAAACCTGAGAATTGgaagaatgaagaaaaaaaagtatttaaaaaaaaaaaacttttgagagatttttttatttgagtgaCATCAGTTATTAAATATTAGTAAGTTTGACAGTTTTTACTAATGACAATATCTCCAAATTGAGGTTTGTGCCAGGTTTATCTCACTTCTGAGTACAAATTTGTGCACAGAACATGATAAAAATGTacaagcacacatacacatgtgCTTACTATTGACCTAatgattttatactgtacattatttaccatactgtatgttgtatgttGTTAACATCACGTAATTAACATGTAATTGACATTTTGTCCCAATCGCATTAAGTTTACAagggacacacacatacacacaagttgTCTTTATTAGGGTTTTCCTTCTTGgtctgtttgttttagtttttctcTATTGCTTTGGCTCTattctaattttttatttttcaaaacaataagtTTAGATCTCTGAACAATTAGCTTATTGTTCATTTCAGAGCAGCATTTCTTATTAGTTTACAGGGTTTTTTACAATCACTATTAGCtagtttccactgactggtacagtacggtatgggtctgtacgggtcacctttatcaggagTGCGTTTctactaccaagggtacccttttggtggccgtggtgtatgacagaaagtttcagtcgacgtcattttcactcgagaaaatgtctacagtaaagctataCGGGTCGTTTACATATAATATGacaagcacttctcacaaaacagacgctttatacacataaatacttctgtataaatgtttatttctaacTTCAATGAACAGGATTTGACTATAAC
>TCONS_00062525
TATGAAATTGGAGAGAAGCTTGGAAGAGGAAGCTTCGGTGATGTGTTTGTGGGGATCCACAAACAAAATCAGCAACAGGTTGCCATCAAATTTGTGAACAAGTTAAAAACAGACCAGTATATCACAGTTCCTGGGCTTTACGAGCCAATGTTGGCAGAAGTGGCATTAAACCTGCTGCTAAATCAACAGCCGATAAGCCCTTACGTTGCGCACATGATAGACTGGTTTGATGAGGAACAACGGTACATACTCATCATGGAGTATTCACAACCCAGCGAGAACTTGCTCACGTTTATCAGTCGCAAAAGGCCAATGAAGGAATTTGAGGCACGAGGCCTGTTGTACCAAGTGTTGCTCGGAACCAAGCACTGTCTGGACAGAGGTGTCTTCCATCGTGACATCAAGTTAAACAACTGTGTGATCAACACCGAGACACAACAAGTCAAACTGATAGACTTTGGCTGTGGTGAACTCCTTAAAAGTGTCTATGTGGGTGGATTTACTGGAGGATGCTGCCCACCAGAGTATGTTGCAACCCTAACATATCGGGCGGACCCAACAACGGTGTGGTCGCTGGGCTACCTGATGTACAAAACGATGTGTGGCTTTTACCCCTTTAAATCACTAGAAGACATGCAGAACTGCAGTCTGACTTTTCCGTTCGGCATATCCAGTGCATTCCAGGATTTGGTCTCGAGGTGCCTGATTTGTGATCCAACCAAGAGAATCACTGTAGATGACATCTTAAAGCACGAGTGGTTTCAGCAAATGCCAGGAGCAGGAGTCAGGTATTGTTTCTTAGGAGATGATGACAGAAATCAATTTCTAAACGTAACCATCATGaccttcaactttttttttttccagcaaaaCTTCATGAACCAGCGTTGA

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0090527 actin filament reorganization biological_process
GO:0022610 biological adhesion biological_process
GO:0048513 animal organ development biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0048568 embryonic organ development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0035107 appendage morphogenesis biological_process
GO:0021983 pituitary gland development biological_process
GO:0021984 adenohypophysis development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0007417 central nervous system development biological_process
GO:0007420 brain development biological_process
GO:0033333 fin development biological_process
GO:0033334 fin morphogenesis biological_process
GO:0030900 forebrain development biological_process
GO:0007155 cell adhesion biological_process
GO:0007166 cell surface receptor signaling pathway biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0005576 extracellular region cellular_component

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000097207 ENSDARG00000115435

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00062524 False 706 lncRNA 0.47 3 15895634 15897758
TCONS_00064609 False 3915 lncRNA 0.42 8 15897282 15902635
TCONS_00062525 True 891 mRNA 0.45 5 15899609 15900954

Neighbor

gene id symbol gene type direction distance location
XLOC_031936 iqca1 coding upstream 2585 15762647 ~ 15893049 (+)
XLOC_031935 CR956630.1 coding upstream 351464 15544055 ~ 15544170 (+)
XLOC_031934 tmtops2a coding upstream 447638 15373153 ~ 15447996 (+)
XLOC_031933 NA coding upstream 587049 15305765 ~ 15308585 (+)
XLOC_031932 ecrg4b coding upstream 595494 15268685 ~ 15300140 (+)
XLOC_031938 CR847983.1 coding downstream 35986 15938621 ~ 15940105 (+)
XLOC_031939 NA coding downstream 88300 15990935 ~ 15993964 (+)
XLOC_031940 gbx2 coding downstream 128554 16031189 ~ 16034286 (+)
XLOC_031941 NA coding downstream 491994 16394629 ~ 16397525 (+)
XLOC_031942 ccdc80l1 coding downstream 504088 16406723 ~ 16423323 (+)
XLOC_031925 dre-mir-153b non-coding upstream 1914542 13980945 ~ 13981092 (+)
XLOC_031917 NA non-coding upstream 2547398 13344675 ~ 13348236 (+)
XLOC_031915 NA non-coding upstream 2628491 13260082 ~ 13267143 (+)
XLOC_031945 NA non-coding downstream 689350 16591985 ~ 16674684 (+)
XLOC_031946 NA non-coding downstream 764823 16667458 ~ 16669146 (+)

Expression


Co-expression Network