XLOC_031939


Basic Information

Item Value
gene id XLOC_031939
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 15990935 ~ 15993964 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064610
GAAACTCAACCAAAAAGAAAGAAGAACAGCCTTTATGCATTCTTCAAAAGGAAATGGCTGTCTGTACAAAAAGGAAATCAGCGTCGACGTCGAAGCAATGAAGTGTCTCCTTTTCAGCCTCCGTCTGACACAGAACCAGTGGGTCAACAGCCAGGCCCATCTTACCTCAAGTCAACAGCTGTAGAAGAGAAAGATTCATCTTCTCTTGAGCTAAATCCACCTGCTCTTGAGTCAAATCCATCAACCCGTCCACAAGATTCACTCTACCCTGAGCCAAGTCCACCTTCTCCTGAGTCAGTTTCCTTTTCTGAAGTTTACGAAGTGGGAGATGAGCTTGGAGAAGGAGGCTTCGGTGTTGTGTTTGAAGGGATCAATAAATTGAGCCAACAACAGGTTGCCATCAAGTTCGTGACGAAGACAATGTTGGACCGGTATATCACAGTTCCTGGGGTTTCCAAACCACTGCCTATAGAGGTGGCCCTAAACCTGCAGCTGAATCAAGCTCCATTAAGCCCCTACATTGTGCACATGATCGACTGGTTTGATGAGGAACATCAGTACATCCTCATCATGGAGTATCCGCAACCCTGCGAGAACTTTCTCAAGTTTATCACTCGCAAAATCAAACTGAGTGAATCTCTGGCACGAGGCCTGTTGTACCAAGTGGTGCTCGGAGCCAAGCACTGTCTTGACAGAGGTGTCTTCCATCAAGACTTTAAGTTAAACAACTTTCTGATCAACAAAGACACACAACAAGTCAAGCTGATAGACTTTGGCTGTGGGGATTTCATCAAAGGTGTCAATCAGGTAAATCCAAAATGGAAATCAGAGCCAGAAACGGTGTGGTCTCTGGCCTTTGTGCTGTACAGAGCGGTCTGCAGTGGTCATCCCTTTGGAACATTTGCAGATACAAAATATGGCCATCCAATATTTGAATCTGGCATATCCAGAGAGTTCCAGGATTTGATCACACGGTGCCTGATACAAGATCCAGCCAAGAGATCCACTATAGAAGAGATGTTACAGCACGAGTGGTTTCATCAGGGACAACAGCACCTCAGAAATTAGGTTCTCCAGATCAGGTGGAAAAACCAGCAGAAAGAAGAAAAAGTccaaaaaacagaagaaaaaacagcagaaagaagaaaaagtccaaaaaacagaagaaaaaacagcagaaagaagaaaaagtccaaaaaacagaagaaaaaacagcagaaagaagaaaaagatcaaaaaacagaagaaaaaacagcagaaagaaaaagatcaaaaaacagaagaaaaaccagcagaaagaagaaaaagtccaaaaaacaagaaaaaacagcagaaagaagaaaaagtccaaaaagcagaagaaaaaccagcagaaagaagaaaaagtccaaaaaacaagaaaaaacagcagaaagaagaaaaagtcca
>TCONS_00064611
CTGCTCTTGAGTCAAATCCATCAACCCGTCCACAAGATTCACTCTACCCTGAGCCAAGTCCACCTTCTCAGACTGCTGtgcataaataatattaatcaaaTTTCCTTTTCTGAAGTTTACGAAGTGGGAGATGAGCTTGGAGAAGGAGGCTTCGGTGTTGTGTTTGAAGGGATCAATAAATTGAGCCAACAACAGGTTGCCATCAAGTTCGTGACGAAGACAATGTTGGACCGGTATATCACAGTTCCTGGGGTTTCCAAACCACTGCCTATAGAGGTGGCCCTAAACCTGCAGCTGAATCAAGCTCCATTAAGCCCCTACATTGTGCACATGATCGACTGGTTTGATGAGGAACATCAGTACATCCTCATCATGGAGTATCCGCAACCCTGCGAGAACTTTCTCAAGTTTATCACTCGCAAAATCAAACTGAGTGAATCTCTGGCACGAGGCCTGTTGTACCAAGTGGTGCTCGGAGCCAAGCACTGTCTTGACAGAGGTGTCTTCCATCAAGACTTTAAGTTAAACAACTTTCTGATCAACAAAGACACACAACAAGTCAAGCTGATAGACTTTGGCTGTGGGGATTTCATCAAAGGAGGATGCTGCCCACCAGAGGATGCTGTGGCCTTGAATGTAGCAGAGCCAGAAACGGTGTGGTCTCTGGCCTTTGTGCTGTACAGAGCGGTCTGCAGTGGTCATCCCTTTGGAACATTTGCAGATACAAAATATGGCCATCCAATATTTGAATCTGGCATATCCAGAGAATACATGCTACATATATTTGCAGAGTTCCAGGATTTGATCACACGGTGCCTGATACAAGATCCAGCCAAGAGATCCACTATAGAAGAGATGTTACAGCACGAGTGGTTTCAT
>TCONS_00062527
GTCTGCAGTGGTCATCCCTTTGGAACATTTGCAGATACAAAATATGGCCATCCAATATTTGAATCTGGCATATCCAGAGAGTTCCAGGATTTGATCACACGGTGCCTGATACAAGATCCAGCCAAGAGATCCACTATAGAAGAGATGTTACAGCACGAGTGGTTTCATCAGGGACAACAGCACCTCAGAAATTAGGTTCTCCAGATCAGGTGGAAAAACCAGCAGAAAGAAGAAAAAGTccaaaaaacagaagaaaaaacagcagaaagaagaaaaagtccaaaaaacagaagaaaaaacagcagaaagaagaaaaagtccaaaaaacagaagaaaaaacagcagaaagaagaaaaagatcaaaaaacagaagaaaaaacagcagaaagaaaaagatcaaaaaacagaagaaaaaccagcagaaagaagaaaaagtccaaaaaacaagaaaaaacagcagaaagaagaaaaagtccaaaaagcagaagaaaaaccagcagaaagaagaaaaagtccaaaaaacaagaaaaaacagcagaaagaagaaaaagtcca

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000097864

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064610 False 1428 lncRNA 0.42 9 15990935 15993964
TCONS_00064611 False 879 lncRNA 0.46 8 15991875 15993477
TCONS_00062527 True 555 lncRNA 0.36 3 15993146 15993964

Neighbor

gene id symbol gene type direction distance location
XLOC_031938 CR847983.1 coding upstream 50830 15938621 ~ 15940105 (+)
XLOC_031937 CR759882.1 coding upstream 88300 15895634 ~ 15902635 (+)
XLOC_031936 iqca1 coding upstream 97886 15762647 ~ 15893049 (+)
XLOC_031935 CR956630.1 coding upstream 446765 15544055 ~ 15544170 (+)
XLOC_031934 tmtops2a coding upstream 542939 15373153 ~ 15447996 (+)
XLOC_031940 gbx2 coding downstream 37225 16031189 ~ 16034286 (+)
XLOC_031941 NA coding downstream 400665 16394629 ~ 16397525 (+)
XLOC_031942 ccdc80l1 coding downstream 412759 16406723 ~ 16423323 (+)
XLOC_031943 zgc:161969 coding downstream 474812 16468776 ~ 16475879 (+)
XLOC_031944 si:ch73-193c12.2 coding downstream 499791 16493755 ~ 16499599 (+)
XLOC_031933 NA non-coding upstream 682350 15305765 ~ 15308585 (+)
XLOC_031925 dre-mir-153b non-coding upstream 2009843 13980945 ~ 13981092 (+)
XLOC_031945 NA non-coding downstream 598021 16591985 ~ 16674684 (+)
XLOC_031946 NA non-coding downstream 673494 16667458 ~ 16669146 (+)
XLOC_031948 NA non-coding downstream 805238 16799202 ~ 16809226 (+)
XLOC_031953 BX511311.5 non-coding downstream 1057075 17051039 ~ 17051135 (+)

Expression


Co-expression Network