XLOC_031945


Basic Information

Item Value
gene id XLOC_031945
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 16591985 ~ 16674684 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064825
ttttttttttacaaaaacATTTTATTACCAATGCTCTCTAGAACCATTTACATCATCACATTTTGATGCTTTTTATGAAGTGGAATGAATATGTACTGAACCCATCAAATGGTAGCAGCAGGTCAATTACTTTAAAGGGACTGAAATTGTAAGCTGCTGGTTGTCTTTTATATAAACAAGTTAGGGAGGCAAAACATCATAAAAATGAATCTGATGAAACAATTTTCAAGTATATTAAACAAACCTCTATTTTAAAACACATTCGTGTTTAAGTTTGCAAATTACAAAAGAATTCTACAATTCATTAATTCTTTTAATTGGGGATTAATAAACATCTATTTATTAATGACGCTACTGGAATTTTCAAGCAATAAATTAAtcggttgatttttttttgtatactaGTGAAAAACAAAAACGCACACCCAATTGTAGTTTTATAAATCAGCCATCCTCCCTGAGCAAACTCTCACAAACTAAAATAGATCTCTGAGCCACATTCACATGCAAGGGACTGTAAATTATAGGGATCTGTGTGACCAGAACActaccgtaaaaaaaaaaaaaaaactggagtcATCTGAGAATCAGCAATAAATATACGGCCCAAAAACACTTTGGCGACCCCAAGTGAGGTTGATTTGTTAAGATTTTGTGATCAGACCAACATGATGACGCTAGATGTTTGTGAGATCAGAATGCAGTGATTAGCTTTGTGATACTGGAGTCTCATGTACGTCTCGTCTTCGGCCGTTTTGATGGACGTTTGGCTTCATCCACAGGAAGCCCATCTCCGCTTGCCTGAGCGAGTCCTCGAACGCCCTGGATCTGACTGACCAGCTGCAGAAGAAGAGGAATCACC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064825 True 862 lncRNA 0.36 2 16591985 16674684

Neighbor

gene id symbol gene type direction distance location
XLOC_031944 si:ch73-193c12.2 coding upstream 92386 16493755 ~ 16499599 (+)
XLOC_031943 zgc:161969 coding upstream 116106 16468776 ~ 16475879 (+)
XLOC_031942 ccdc80l1 coding upstream 168662 16406723 ~ 16423323 (+)
XLOC_031941 NA coding upstream 194460 16394629 ~ 16397525 (+)
XLOC_031940 gbx2 coding upstream 557699 16031189 ~ 16034286 (+)
XLOC_031947 pimr12 coding downstream 62187 16736871 ~ 16737608 (+)
XLOC_031948 NA coding downstream 124518 16799202 ~ 16809226 (+)
XLOC_031949 pimr21 coding downstream 195320 16870004 ~ 16871322 (+)
XLOC_031950 pimr28 coding downstream 221001 16895685 ~ 16896994 (+)
XLOC_031951 pimr13 coding downstream 275051 16949735 ~ 16951160 (+)
XLOC_031939 NA non-coding upstream 598021 15990935 ~ 15993964 (+)
XLOC_031938 CR847983.1 non-coding upstream 651880 15938621 ~ 15940105 (+)
XLOC_031937 CR759882.1 non-coding upstream 689350 15895634 ~ 15902635 (+)
XLOC_031935 CR956630.1 non-coding upstream 1047815 15544055 ~ 15544170 (+)
XLOC_031953 BX511311.5 non-coding downstream 376355 17051039 ~ 17051135 (+)
XLOC_031955 NA non-coding downstream 383508 17058192 ~ 17274417 (+)
XLOC_031958 BX511311.8 non-coding downstream 530508 17205192 ~ 17205289 (+)
XLOC_031961 CABZ01041996.1 non-coding downstream 642873 17317557 ~ 17317653 (+)

Expression


Co-expression Network