XLOC_031963


Basic Information

Item Value
gene id XLOC_031963
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 17532018 ~ 17533025 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064612
GTATTCAGGCGAAAGTGTCTTGTCGTAATGTTGGCACAGAAACTATTTCTTTGCCAGATATGCAGCTCTCTTCAACACCAATTAAGGGTTCAATCTTTAGGCCAAGCAAGCGACCTCGTCTTTTGTTGGAGGAGGAGGATGACAACAATGATGATGAGGACGAAGAGTCTGATTTGCATGTAGAACCACATGACTCCACTTATAATCCGGAATCTGTTGTCACGGAAGATTCACAGTCAGTGTTAGATCCAGAATCAAACTACATGGACAACAAATACATTGTATTTGAAAGCTGCCTTATAGACTTGTTTGGTTCCTGTCCCGTCTGTAAGACAAAGTGTGCCATCCAAAAAAGACAAATGGGGACTTTTATTGCATTCACACAGCTGTGTGACAAGTGTAACTACCTACGACAGTGGCAGAGCCAGCCCATAGTAGGTAGTACTCCAGTCGGAAACCTGATGTTGTCTGCTGCTACATATTTCACTGGTGGATCATTCATTCAACTACAGAGGGTTTTCAAGGCCATGAATCTTCAAACGATTCAGTACTCTGCTTTCAGGAACCATGCCAGAAATTTTTTAGAACCTGCCATCATACACAAGTGGAATCTAgagcaacaaaatatttttacacagctAAAAAAAGAGGGAGCGGTTGCATTAGCAGGAGATATGAGAGCTGACACACCAGGTATGGTGGGTTTATTTAAATCACTTTGAAATCtgataaatgtatgtgtgttaatgtataattctttttt

Function

GO:

id name namespace
GO:0019222 regulation of metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064612 True 763 lncRNA 0.41 3 17532018 17533025

Neighbor

gene id symbol gene type direction distance location
XLOC_031962 BX470083.5 coding upstream 150436 17381485 ~ 17381582 (+)
XLOC_031961 CABZ01041996.1 coding upstream 214365 17317557 ~ 17317653 (+)
XLOC_031960 pimr15 coding upstream 263021 17267681 ~ 17268997 (+)
XLOC_031959 pimr11 coding upstream 322753 17208022 ~ 17209265 (+)
XLOC_031958 BX511311.8 coding upstream 326729 17205192 ~ 17205289 (+)
XLOC_031964 CR391990.1 coding downstream 79019 17612044 ~ 17613202 (+)
XLOC_031965 NA coding downstream 173984 17707009 ~ 17707782 (+)
XLOC_031966 CR376861.1 coding downstream 256456 17789481 ~ 17790513 (+)
XLOC_031967 si:dkey-237i9.8 coding downstream 609598 18142623 ~ 18181589 (+)
XLOC_031968 ccdc40 coding downstream 718115 18251140 ~ 18292410 (+)
XLOC_031955 NA non-coding upstream 257601 17058192 ~ 17274417 (+)
XLOC_031953 BX511311.5 non-coding upstream 480883 17051039 ~ 17051135 (+)
XLOC_031969 BX005286.1 non-coding downstream 721375 18254400 ~ 18261416 (+)
XLOC_031974 NA non-coding downstream 987834 18520859 ~ 18523946 (+)
XLOC_031978 NA non-coding downstream 1179737 18712762 ~ 18728431 (+)

Expression


Co-expression Network