si:ch211-180a12.2 (LOC106579407)


Basic Information

Item Value
gene id si:ch211-180a12.2
gene name LOC106579407
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 28388779 ~ 28446671 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036946697.1
cccatatAAGAGCCGGTGAGGGAGAGATGATAAGAAGTTAGTCTTGGGACAAGCTCAGACCATGCAGTGTAAAGTCCTTCTCTGCCTCTACTTCCTGACAATCATAAAGCATGTCTCCCCAACTGAAGTTTGGGTCCGGCCACATACGTCTGCCCTTCTCCCCTGTTCTATCTCAGTCCCTCCTGTAGGCGACTCTCTCCTGGGGATCAGTTGGACCTTCAACGGATCTCATATAGCCTCCTTCGGGACGACAGACGACAACCATGTCGACAAAGGCTTCAGTTGGGACACCAGTTTATTTGTCAATGGGACCTTCTCTCTGACTTTGCTTAATGCCACTCTTGACCAACAGGGCGTGTATGAGTGTCAAGTCAGATACAACGTCTCCGAGCTACACTCCAGCAATGTTACATTGGACATCAAAGTTCCACCCACTCTCTCCATTCCCACCACGATGGTGGTACTGGATGTGAAGAGTGAGCTTCACTGTATTGCAGAGGGTTTTAGCCCTCCACTCATCTACTTCTCCTGGACCAGAGCTGGGGAGGTGGTCCAGCTAGAGCAAGCGGTCACAGCAGTCGACCGCACCCCAGAAGGGACCTACTGGGCGGTCAACATCTTGAAATTTATCCCTTTGGTGGACGACCAGAATGTGATCTATGGCTGTGTGGTCACTCACGCAGCCCTGGACAAACTGCTGAGCTTAGAGTTTCAACTCAGCTTCGTCTACCTCCCGACTGTCACCCTCTCCGCAATGCCTTTGCCCTCCCGCGACTCCCCACTCACCCTCTCCTGCGACATCGAGGGCTTCTATCCAGAGGATGTCTCCGTTTCCTGGCTACAGAATGGCACGGAGCTCCCCGCACCTCTGCTGAGCGAGTCGGGCCCGGACGGCACCTTCAGAACCAGGCGCTACTACACCCTGAGCCCCGAGCAGAGGGAGCTAGCCGGGGAGGTAGAGTGTGTCGTCCATCTGCCCAGCATCACTGAACCTGTGGTCACCTCCGCAGCCCTGGCCGACATCGACCCCATCATagAGACACAAACTGCGCTGACCAAGTCTGCCAAGGCATCTGTGGCTCTGATGTGCATCTCTCTGGTGCTGGTCTTTCTGCTCTGCTTTGGCTTCTCCTGGAGAAGGCGGGATGAGAAGCAGAAGTTTCTAAATGTATCGGGGATCATTCTGCCTCCCCGGGTCATTGTGGGTCAGAAGGGCAGGGTGACCATCagtgtggaggggaggagggtggacAGGGTCCAGACCACCTGGTTTCTCAATGACACCCCCATTTCAGACACCTCACACACAGAATCCCGTCCCACATTCAAAGCGTGCGCTAACAACACTAACTTTCTCCGTAACCAACTAAGCACCATGCTTCTACCCTACGGTCTCACTTTCACCTCCCCAGTCTCGGAGAAGGGTCCTCTGCTGCCCTCTGGTGGCGACGTGGGCTATTACAAACTGCACACCCAGGGCCCGCTGCACTCGACGGGGGACAGCAGCAAGCAGCGACTGCTGTCCTCGCTCTCCTTCATCCCCCTGATCTCCATCCACAAGGGTGCGGTGTTCAAGTGCCAGGTGTCTTATGTGGGGAAAGACCAGGTTGTGGTGGAGAGGGTGTCAGATAAGTTCACCATATTAGCTCCCCCCAAGGTCTCAGAGATTCAGCTCACAGAGGCAGGTGATGACTCCAgtGTGGTCACCCTGACCACCCAGGCCTTGTGCTTCCATCCAGACATCATCACCTTCCGTTGGTTCTGCCAGGGGGGCGAACTGAGCCCCGTGGCTTCTCAGGCCCTATCTGCCCCACGGCCCGACACCCAGGGCTTCTTCTCGGCCATGAGCCAGTGCAAGCTGCCCCGCGCCGAGCTGGAGCATGGCGGCACCAAGGTGTGGGTGAGCGTCCATCACATCGCTCTCAAGCACCCCGTCACCCGCGAGACCCGAGGTTTCATAAAGAGGCCCAATGTGTCCGAGATCATCAGCTCTGCCTCCTTCCCTGGTCAACATTTGACATTGGGCTGTGACATGACTGGGTTCTACCCTCCAGGCATCTCAGTCACCTGGCTCCatctgagagaaggagaggtggatgacCGAGAGGAAGAGGTGATAGAAGGAGGAGAAGTCTGGGGGCCCCTGCTGAGCGGTCCCAGTACCTACCGTGCCAACGCCACTCTGAGGAAGAGGGGAACAAATGAAGAGAAGGAGAGCGCAGGAGGGGTGGTGTGCCGAGTGGAGCACTGTTCGCTGGAGGAGCCCATCGAGAGACGGTGGAGAAATATTCTTATCGctgctccctccatcccctcctctcttacTGTCCATTGGACCAGCGAGGGTGTTGGGGTTTTCAATCTCCTATTGACGGGAGGCCACCCAAAAGCTAAAGTGCTCTGGGCAGCAGGGGGCACCACCCTCATACCCCTGGTGTCCAACGAGACAGGCGGGAAAGGagtggacggacagagagagattaggagCGTGTGCGCTTTGGAGAGATCCACTTGCTGGATCAGTCAGACAGACGGAAATGGTCAGATGGACAGTCGGAAAAACGGACACACACTTAAAACAAAAGCCGCAGTCGCTGACCCCGAAACGGAAGGAATAGAGTACATTGACGAAAGAGACGGAGAGAACAACAACGTGGAAAGGAAGGTGACGCAGATGGAGATGGAGGATGAGAGTAGGGAAGAGGAAGAAGGAGTGGAAACGTTGCACATAAACAGGGTGAACGTGAGAAAGGGgcccagaggggaggagagagcacgACTGAGAGTGAGCGTGGAGATCACCCACCCAGCCCTTAAGCTGCCTGTGCACCGAACATGGACAGagcCCAAGGAAGAGGTTTCATCTTCACTGTGAAGGGGGCCtacaaaatgtgtttattttttataacaTAGATATAAAATACTTATGGTATACGACTCCTCAGGGTGTCACACTTTAtcctataagtaagcatttcactgttagtctacacctattATTTACAAAGCttatgacaaatacatttgatttgatgcttgTTCCTGCATAATGTCATTTGTAATTGTATGATTCATACATTTCATATTCAAGTCATATTTCGTTTCAGGTTCCGCACAACGTGTGTCGCATAATCTTCtaaaaacacatacatttttgaaaatgtaatttTGTCAATAAAATCTTGGTTCACTTTT
>XM_036946698.1
cccatatAAGAGCCGGTGAGGGAGAGATGATAAGAAGTTAGTCTTGGGACAAGCTCAGACCATGCAGTGTAAAGTCCTTCTCTGCCTCTACTTCCTGACAATCATAAAGCATGTCTCCCCAACTGAAGTTTGGGTCCGGCCACATACGTCTGCCCTTCTCCCCTGTTCTATCTCAGTCCCTCCTGTAGGCGACTCTCTCCTGGGGATCAGTTGGACCTTCAACGGATCTCATATAGCCTCCTTCGGGACGACAGACGACAACCATGTCGACAAAGGCTTCAGTTGGGACACCAGTTTATTTGTCAATGGGACCTTCTCTCTGACTTTGCTTAATGCCACTCTTGACCAACAGGGCGTGTATGAGTGTCAAGTCAGATACAACGTCTCCGAGCTACACTCCAGCAATGTTACATTGGACATCAAAGTTCCACCCACTCTCTCCATTCCCACCACGATGGTGGTACTGGATGTGAAGAGTGAGCTTCACTGTATTGCAGAGGGTTTTAGCCCTCCACTCATCTACTTCTCCTGGACCAGAGCTGGGGAGGTGGTCCAGCTAGAGCAAGCGGTCACAGCAGTCGACCGCACCCCAGAAGGGACCTACTGGGCGGTCAACATCTTGAAATTTATCCCTTTGGTGGACGACCAGAATGTGATCTATGGCTGTGTGGTCACTCACGCAGCCCTGGACAAACTGCTGAGCTTAGAGTTTCAACTCAGCTTCGTCTACCTCCCGACTGTCACCCTCTCCGCAATGCCTTTGCCCTCCCGCGACTCCCCACTCACCCTCTCCTGCGACATCGAGGGCTTCTATCCAGAGGATGTCTCCGTTTCCTGGCTACAGAATGGCACGGAGCTCCCCGCACCTCTGCTGAGCGAGTCGGGCCCGGACGGCACCTTCAGAACCAGGCGCTACTACACCCTGAGCCCCGAGCAGAGGGAGCTAGCCGGGGAGGTAGAGTGTGTCGTCCATCTGCCCAGCATCACTGAACCTGTGGTCACCTCCGCAGCCCTGGCCGACATCGACCCCATCATagAGACACAAACTGCGCTGACCAAGTCTGCCAAGGCATCTGTGGCTCTGATGTGCATCTCTCTGGTGCTGGTCTTTCTGCTCTGCTTTGGCTTCTCCTGGAGAAGGCGGGATGAGAAGCAGAAGTTTCTAAATGTATCGGGGATCATTCTGCCTCCCCGGGTCATTGTGGGTCAGAAGGGCAGGGTGACCATCagtgtggaggggaggagggtggacAGGGTCCAGACCACCTGGTTTCTCAATGACACCCCCATTTCAGACACCTCACACACAGTCTCGGAGAAGGGTCCTCTGCTGCCCTCTGGTGGCGACGTGGGCTATTACAAACTGCACACCCAGGGCCCGCTGCACTCGACGGGGGACAGCAGCAAGCAGCGACTGCTGTCCTCGCTCTCCTTCATCCCCCTGATCTCCATCCACAAGGGTGCGGTGTTCAAGTGCCAGGTGTCTTATGTGGGGAAAGACCAGGTTGTGGTGGAGAGGGTGTCAGATAAGTTCACCATATTAGCTCCCCCCAAGGTCTCAGAGATTCAGCTCACAGAGGCAGGTGATGACTCCAgtGTGGTCACCCTGACCACCCAGGCCTTGTGCTTCCATCCAGACATCATCACCTTCCGTTGGTTCTGCCAGGGGGGCGAACTGAGCCCCGTGGCTTCTCAGGCCCTATCTGCCCCACGGCCCGACACCCAGGGCTTCTTCTCGGCCATGAGCCAGTGCAAGCTGCCCCGCGCCGAGCTGGAGCATGGCGGCACCAAGGTGTGGGTGAGCGTCCATCACATCGCTCTCAAGCACCCCGTCACCCGCGAGACCCGAGGTTTCATAAAGAGGCCCAATGTGTCCGAGATCATCAGCTCTGCCTCCTTCCCTGGTCAACATTTGACATTGGGCTGTGACATGACTGGGTTCTACCCTCCAGGCATCTCAGTCACCTGGCTCCatctgagagaaggagaggtggatgacCGAGAGGAAGAGGTGATAGAAGGAGGAGAAGTCTGGGGGCCCCTGCTGAGCGGTCCCAGTACCTACCGTGCCAACGCCACTCTGAGGAAGAGGGGAACAAATGAAGAGAAGGAGAGCGCAGGAGGGGTGGTGTGCCGAGTGGAGCACTGTTCGCTGGAGGAGCCCATCGAGAGACGGTGGAGAAATATTCTTATCGctgctccctccatcccctcctctcttacTGTCCATTGGACCAGCGAGGGTGTTGGGGTTTTCAATCTCCTATTGACGGGAGGCCACCCAAAAGCTAAAGTGCTCTGGGCAGCAGGGGGCACCACCCTCATACCCCTGGTGTCCAACGAGACAGGCGGGAAAGGagtggacggacagagagagattaggagCGTGTGCGCTTTGGAGAGATCCACTTGCTGGATCAGTCAGACAGACGGAAATGGTCAGATGGACAGTCGGAAAAACGGACACACACTTAAAACAAAAGCCGCAGTCGCTGACCCCGAAACGGAAGGAATAGAGTACATTGACGAAAGAGACGGAGAGAACAACAACGTGGAAAGGAAGGTGACGCAGATGGAGATGGAGGATGAGAGTAGGGAAGAGGAAGAAGGAGTGGAAACGTTGCACATAAACAGGGTGAACGTGAGAAAGGGgcccagaggggaggagagagcacgACTGAGAGTGAGCGTGGAGATCACCCACCCAGCCCTTAAGCTGCCTGTGCACCGAACATGGACAGagcCCAAGGAAGAGGTTTCATCTTCACTGTGAAGGGGGCCtacaaaatgtgtttattttttataacaTAGATATAAAATACTTATGGTATACGACTCCTCAGGGTGTCACACTTTAtcctataagtaagcatttcactgttagtctacacctattATTTACAAAGCttatgacaaatacatttgatttgatgcttgTTCCTGCATAATGTCATTTGTAATTGTATGATTCATACATTTCATATTCAAGTCATATTTCGTTTCAGGTTCCGCACAACGTGTGTCGCATAATCTTCtaaaaacacatacatttttgaaaatgtaatttTGTCAATAAAATCTTGGTTCACTTTT

Function

NR:

description
uncharacterized protein LOC110491787

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036946697.1 False 3195 mRNA 0.53 13 28388779 28446671
XM_036946698.1 True 3093 mRNA 0.53 13 28388779 28446671

Neighbor

gene id symbol gene type direction distance location
eif3c LOC100286610 coding downstream 19435 28298253 ~ 28369344 (-)
taok2b LOC106579406 coding downstream 151425 28177715 ~ 28237354 (-)
maz maz coding downstream 211868 28165347 ~ 28176911 (-)
tlcd3bb LOC106579402 coding downstream 259940 28081911 ~ 28128839 (-)
kif22 kif22 coding downstream 339914 28013117 ~ 28048865 (-)
LOC110491788 LOC106579408 coding upstream 32108 28478779 ~ 28534177 (-)
LOC110491790 LOC100194624 coding upstream 88646 28535317 ~ 28540645 (-)
afap1l2 afap1l2 coding upstream 179461 28626132 ~ 28767002 (-)
LOC110491794 NA coding upstream 965799 29412470 ~ 29423653 (-)
LOC110491798 LOC106578369 coding upstream 1228146 29674817 ~ 29702593 (-)
G1359812 NA non-coding downstream 75372 28274766 ~ 28313407 (-)
G1359773 NA non-coding downstream 211223 28177272 ~ 28177556 (-)
G1359771 NA non-coding downstream 211572 28176957 ~ 28177207 (-)
G1359748 NA non-coding downstream 255152 28133397 ~ 28133627 (-)
G1359717 pagr1 non-coding downstream 316251 28051545 ~ 28072528 (-)
G1359899 NA non-coding upstream 22861 28469532 ~ 28469782 (-)
G1359895 NA non-coding upstream 25517 28472188 ~ 28473229 (-)
G1359890 NA non-coding upstream 45755 28492426 ~ 28501241 (-)
G1359974 NA non-coding upstream 101609 28548280 ~ 28548519 (-)
G1359976 NA non-coding upstream 103084 28549755 ~ 28549981 (-)
G1359763 NA other downstream 224552 28163463 ~ 28164227 (-)
G1359412 NA other downstream 860642 27527163 ~ 27528137 (-)
G1359321 NA other downstream 1029217 27357284 ~ 27359562 (-)
G1359119 NA other downstream 1275378 27111783 ~ 27113401 (-)
G1361290 NA other upstream 1050442 29497113 ~ 29497555 (-)
G1361619 NA other upstream 1477200 29923871 ~ 29925154 (-)
G1363836 NA other upstream 3192766 31639437 ~ 31650697 (-)
G1364105 NA other upstream 3439078 31885749 ~ 31886112 (-)
G1364348 NA other upstream 3572123 32018794 ~ 32019498 (-)

Expression


Co-expression Network