LOC110491798 (LOC106578369)


Basic Information

Item Value
gene id LOC110491798
gene name LOC106578369
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 29674817 ~ 29702593 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021565563.2
ACTACATCAAACATGTGCATTTGACATTAAGGTCATCCTTCTCCAGACGGTGGTCTCACACAGACAGAAAGGCTTGTTGTGTAACTAATAGAGAGCTTTAGAGTAGCGGTGTGTAAATACATATTAGGGGACAGTGGGTTGTGTTGTTATGTTCATTAATACATTCTTGTGCGGATTGgggcaagagagtgagagagctttACATAATTGCATGCATGCTTTTTCACGTGAAATGCCCCTTTAAAAGTGGGATCAGTTAGGTTAGAGGCACATTGTAAAGCAAGCGGACAGTGAAGAGTAAGTAGATCTGTGATTTGCGCTTTACTGGTGTGAAAAATCGCACTGAAGATGGTGTCTTCCTACCCTTTACCGGATGGCTTCTCAGACTTTGATGTATTCTCTTTGGGATCTTGTCTGCTAGTGGAGGGTCTTCTGGGATTCTTCCTGAATGCTGTGACAGTCGCTGCTTTCCTCAAAATAAGAGAACTGAGAACCCCCAGCAATTTCCtagtcttgagtttggcattggCCGATATGGGCATCTCTACGAACGCAACCATTGCTGCTTTCTCCAGTTTTCTGAGGTACTGGCCCTATGGCTCTGATGGCTGCCAGACTCATGGCTTCCAGGGTTTCGTGACAGCTCTCGCCAGCATCCACTTTATTGCTGCCATTGCATGGGACAGATACCACCAGTACTGCACAAGGACAAAGCTACAGTGGAGCAGTGCCATCACTCTGGCTATTTTCATCTGGCTGTTCACCGCCTTCTGGTCAGCCATGCCCCTCATCGGCTGGGGAGAGTATGACTACGAACCCCTCAGGACATGCTGTACCCTGGACTACAGCAAAGGAGACAGCAACTATACATCCTACCTGATCCCCATGGCCATTTTCAACATGGCCATCCAGACCATTGTTGTCATGTCCTCCTACCAGTCCATCGGCCAGAAATTCAAGAAGACTGGAAACCCCAGGtttaaCACTTCCACTCCCCTGAAGACATTTTTGTTCTGCTGGGGACCCTATGGAGTCCTTGCCTTCTACGCTGCTGTTGAGAATGCCAACTTGGTCTCTCCCAAAATTAGGATGTTGGCTCCTATTCTGGCAAAGACCTCTCCCACCTTCAACGTTTTCGTGTACGCCCTGGGCAATGAGAACTACAGAGGAGGCATCTGGCAGTTCCTCACTGGGGAAAAGACTGAAGTGCCTcaaattgagaacaagttcaaaTAAACTAAGCATGTGAAAATCACACACAAACTGTCTTCTTGGTTTTCCAAAAGGTACGAATGTTGTTGTAGATTCATTAAAGTCACTGGACCtggccttcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaggcattTTAGTCTGGGGTTAACATGGAGTGTTGTGTTTGTTCTGGCATTGGGATATATTTATGTTCAGTCTCTAGTTTAGGATGAGCAGTAGACACACGCCATGCCAGACTGGTGAAAAACTATATTATTAGGTATTGATATTATAAATTATGACATATAATGATGAATTCCTGTCCAGCTCAAATAGCCAAGAACATAATTTCTCTAAATGGActaaaatacatatatatttttaacactTCTTTAGTCGACAGGTATAATGAATGCTTCATCACTTTATGATGTCTTGTTAtcatctacagacaattccttcgacctcatggcttgctttttgctctgacatgcactgtcaactgtgggaccttatatagacaggtgtgtgcctttccaaatcatgtccaatcaattgaatttaccacat

Function

NR:

description
RPE-retinal G protein-coupled receptor-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0006935 chemotaxis biological_process
GO:0007601 visual perception biological_process
GO:0007602 phototransduction biological_process
GO:0070098 chemokine-mediated signaling pathway biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0016021 integral component of membrane cellular_component
GO:0009881 photoreceptor activity molecular_function
GO:0004950 chemokine receptor activity molecular_function

KEGG:

id description
K04254 RGR; retinal G protein coupled receptor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021565563.2 True 1938 mRNA 0.45 7 29674817 29702593

Neighbor

gene id symbol gene type direction distance location
LOC110491794 NA coding downstream 251164 29412470 ~ 29423653 (-)
afap1l2 afap1l2 coding downstream 907815 28626132 ~ 28767002 (-)
LOC110491790 LOC100194624 coding downstream 1134172 28535317 ~ 28540645 (-)
LOC110491788 LOC106579408 coding downstream 1140640 28478779 ~ 28534177 (-)
si:ch211-180a12.2 LOC106579407 coding downstream 1228146 28388779 ~ 28446671 (-)
LOC110492894 NA coding upstream 152584 29855177 ~ 29873630 (-)
LOC110492868 LOC106579432 coding upstream 253013 29955527 ~ 30543872 (-)
LOC110491806 LOC106579428 coding upstream 1222012 30924605 ~ 31019315 (-)
LOC110492870 ate1 coding upstream 1427524 31130117 ~ 31182991 (-)
LOC110491809 p5cs coding upstream 1568016 31270609 ~ 31285633 (-)
G1361403 NA non-coding downstream 13668 29660930 ~ 29661149 (-)
G1361360 NA non-coding downstream 22793 29647268 ~ 29652024 (-)
G1361309 NA non-coding downstream 147030 29521207 ~ 29527787 (-)
G1361303 NA non-coding downstream 163209 29511402 ~ 29511608 (-)
G1361302 NA non-coding downstream 163513 29510890 ~ 29511304 (-)
G1361458 NA non-coding upstream 38134 29740727 ~ 29740966 (-)
G1361468 NA non-coding upstream 52930 29755523 ~ 29818857 (-)
G1361508 NA non-coding upstream 116754 29819347 ~ 29819603 (-)
G1361645 NA non-coding upstream 201288 29903881 ~ 29904104 (-)
G1361290 NA other downstream 177262 29497113 ~ 29497555 (-)
taok2b LOC106579406 other downstream 1493877 28177715 ~ 28237354 (-)
G1359763 NA other downstream 1510590 28163463 ~ 28164227 (-)
G1359412 NA other downstream 2146680 27527163 ~ 27528137 (-)
G1359321 NA other downstream 2315255 27357284 ~ 27359562 (-)
G1361619 NA other upstream 221278 29923871 ~ 29925154 (-)
G1363836 NA other upstream 1936844 31639437 ~ 31650697 (-)
G1364105 NA other upstream 2183156 31885749 ~ 31886112 (-)
G1364348 NA other upstream 2316201 32018794 ~ 32019498 (-)
G1365099 NA other upstream 2931872 32634465 ~ 32635511 (-)

Expression


Co-expression Network