LOC110491809 (p5cs)


Basic Information

Item Value
gene id LOC110491809
gene name p5cs
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 31270609 ~ 31285633 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021565588.2
CACAACACAACCCACACGTTTCGGGAACACGGTCTATGGCTGCCTGTGGATGTGGCAATCTGACGACGTGTCTTTGCTCAGCAGTTGTCAATTTTGCTGCAGCGGGAACCTTCGACTTTTATAAGTACTGACTGTTGATCAAATTGCCATGATGTTGCAGAGGCTGGCCTTGTGTTCCAGTCTACGTTCCAGGAGCCTGCAAGCAAATGTTTGCCCACACTTTGCCAGGGCAGTGTCCCAAACCAAGTTCCCTGTCACCCATTCTCCTGGGAAGTCAGCAGCGCACCGCAGTGAGCTCAGACAGGCCAAGCGCATTGTGGTGAAATTGGGCAGTGCTGTGGTGACGCGGGGAGATGAGTGTGGCTTGGCCCTCGGGCGTCTCGCCTCCATTGTGGAGCAGGTGGCCGTGCTGCAGAACCAAGGCAGGGAGATGATGATTGTCACCAGTGGGGCCGTTGCTTTCGGAAGGCAGAGACTGAGACACGAGATCCTGCTATCTCAGAGCGTCAGACAAGCCTTGCACTCTGGACAGAACCAACTCAAAGAAATGTCACTTCCAGTTCTGGAGGCCCGGGCGTGTGCAGCTGCTGGACAGAGTGGCTTGATGGCTCTGTATGAAGCTATGTTCACCCAGTACAGCACCTGCACTGCACAGATCCTTGTCACGAACCTCGACTTCCACGATGAGCAGAAGCGTCGCAACCTGAACAGCACCCTCCACGAGCTGCTGCGCATGAACATAGTGCCCATCATCAACACCAATGACGCAGTTGTACCGCCCCCTGTTCCAAACAGTGACCTTCAGGGGGTAAATGTAATACACATCAAGGATAACGACAGCTTGGCTGCAAGACTGGCTGTTGAAATGAAAGCAGACCTTCTTATTGCTCTATCTGATGTTGAAGGATTGTATGACAGCCCCCCAGGAACAGATGACGCTAAACTCATCGATATCTTCTACCCCGGAGACCAGCAGTCTATCAGATATGGCTCAAAGTCCAAAGTGGGCATTGGGGGCATGGAGGCAAAGGTGAAGTCTGCTCTGTGGGCGCTTCAGGGTGGCACGTCAGTCGTCATTGCCAATGGCACCGACCCCAAAGTCACGGGCCACGTCatcacagacatagtggagggaAAGAAAGTGGGCACATTCTTCTCTGAGGTCAAGCCTGCTGGTCCCACTGTGGAGCAGCAGACAGAAatggccaggcaggcaggcaggactcTGGCTACTCTTCACCCAGATGAGagaggagagataatTTGCCGTCTGGCTGACCTGCTGACAGAGAAGAAGGATGAGATCCTCAGTGCCAacaagagagacatggagactgCAGCATCATCAGGCCGTCTCTCCCAACCCCTGCTGGCAAGGTTGAGTTTGTCCACATCGAAGCTGAACAGCCTAGCCATAGGCCTGCGTCAGATTGCTGTATCGTCCAGGGACAGCGTGGGGCAGGTGCTCCGCAGGACCAGAGTCGCCAACAACCTGGAGCTCGAACAGATCACTGTGCCCATCGGGGTCCTGCTGGTCATCTTTGAGTCCCGACCCGACTGCCTTCCTCAGGTGTCAGCTCTGGCTATTGCCAGTGGAAATGCTCTGTTACTGAAGGGGGGAAAAGAAGCGGCCAACACCAACCGTATCTTGCATCAGCTGACCCAGGAGGCGCTCTCTATCCACGGGGTGAAGGATGCTATTCAGCTGGTGAGTACCCGTGAGGAGGTGGAGGACCTGTGTAGACTAGATAAGATGATAGACCTGATCATCCCTCGAGGCTCGTCCCAGCTGGTCAGAGACATCCAGAGAGCTGCCAAGGGCATCCCTGTGCTGGGACACAGTGAGGGCATCTGCCATGTCTACATCGACTCTGAGGCCTGCATCGAAAAGGCTATTGACATCATCAAAGACTCTAAATGTGACTACCCTGCGGCCTGCAATGCCATGGAGACCCTACTCCTCCACAGAGATCTACTGAGGACACCTCTGTTTGACCAGATTATAGATATGCTTAGAGTGGAACAGgtgaagatcCATGCAGGCCCCAGGTTTGCCTCCTACCTGACTTTTAGCCCATCTGAGGTGAAGTCTCTGAGGACAGAGTACGGGGACCTGGAGTGCTGCATTGAGGTGGTGGATAGTATGCAGGACGCCGTGGACCACATCCACAAATACGGCAGCTCCCACACAGATGTCATTGTTACAGATAATGAGAATACAGCTGAACAGTTCATGCAGCAGGTGGACAGTGCCTGTGTTTTCTGGAACGCTAGCTCTCGCTTTGCTGATGGATACAGATTTGGTCTTGGTGCGGAGGTTGGCATCAGCACAGCTCGGATCCATGCGAGGGGCCCAGTGGGTCTGGAGGGGCTGCTGACCACCAAGTGGGTCCTCCGGGGTGAGGGGCACACAGTGGCAGAGTTCTCAGAGGCGGGCAGTATGAAGTACCTTcatgagaacatccctgttcCTCAGAGATTCCCCAGCTAGGAACCACAGTCAGTCACAGAACGCTCCAATACAGGAACTGTCATGTAAAGTGGGAAGTGAAAACCTTAAAGTTCATTTTTATGAGTAGGGCTTAAATTGCAACCTTATATATGGATCTGTATGTGACTGTGGGGGTCAACAAACCACTTTCAGATACCACATACATGAAAGCAGCAGGAGGCTGTTTTGTATCTGCTACAGTGTCGGAGCGTGTAAAGCATTAAGATGACCTGGAAATTAATGAAGAGGTGGTGAACGGTTGCACAGGAAAGCAAAATGGTCAaagtatacgtgtgtgtgtacgctatatatacaaaagtatgtggaggcctgttcaaatgagtggattcagctttTTCAGCcatacctgttgctgacaggtgtataaaatcgagcacacagccatacaatctccatagcccagaattggcagt
>XM_021565589.2
CACAACACAACCCACACGTTTCGGGAACACGGTCTATGGCTGCCTGTGGATGTGGCAATCTGACGACGTGTCTTTGCTCAGCAGTTGTCAATTTTGCTGCAGCGGGAACCTTCGACTTTTATAAGTACTGACTGTTGATCAAATTGCCATGATGTTGCAGAGGCTGGCCTTGTGTTCCAGTCTACGTTCCAGGAGCCTGCAAGCAAATGTTTGCCCACACTTTGCCAGGGCAGTGTCCCAAACCAAGTTCCCTGTCACCCATTCTCCTGGGAAGTCAGCAGCGCACCGCAGTGAGCTCAGACAGGCCAAGCGCATTGTGGTGAAATTGGGCAGTGCTGTGGTGACGCGGGGAGATGAGTGTGGCTTGGCCCTCGGGCGTCTCGCCTCCATTGTGGAGCAGGTGGCCGTGCTGCAGAACCAAGGCAGGGAGATGATGATTGTCACCAGTGGGGCCGTTGCTTTCGGAAGGCAGAGACTGAGACACGAGATCCTGCTATCTCAGAGCGTCAGACAAGCCTTGCACTCTGGACAGAACCAACTCAAAGAAATGTCACTTCCAGTTCTGGAGGCCCGGGCGTGTGCAGCTGCTGGACAGAGTGGCTTGATGGCTCTGTATGAAGCTATGTTCACCCAGTACAGCACCTGCACTGCACAGATCCTTGTCACGAACCTCGACTTCCACGATGAGCAGAAGCGTCGCAACCTGAACAGCACCCTCCACGAGCTGCTGCGCATGAACATAGTGCCCATCATCAACACCAATGACGCAGTTGTACCGCCCCCTGTTCCAAACAGTGACCTTCAGGGGGTAATACACATCAAGGATAACGACAGCTTGGCTGCAAGACTGGCTGTTGAAATGAAAGCAGACCTTCTTATTGCTCTATCTGATGTTGAAGGATTGTATGACAGCCCCCCAGGAACAGATGACGCTAAACTCATCGATATCTTCTACCCCGGAGACCAGCAGTCTATCAGATATGGCTCAAAGTCCAAAGTGGGCATTGGGGGCATGGAGGCAAAGGTGAAGTCTGCTCTGTGGGCGCTTCAGGGTGGCACGTCAGTCGTCATTGCCAATGGCACCGACCCCAAAGTCACGGGCCACGTCatcacagacatagtggagggaAAGAAAGTGGGCACATTCTTCTCTGAGGTCAAGCCTGCTGGTCCCACTGTGGAGCAGCAGACAGAAatggccaggcaggcaggcaggactcTGGCTACTCTTCACCCAGATGAGagaggagagataatTTGCCGTCTGGCTGACCTGCTGACAGAGAAGAAGGATGAGATCCTCAGTGCCAacaagagagacatggagactgCAGCATCATCAGGCCGTCTCTCCCAACCCCTGCTGGCAAGGTTGAGTTTGTCCACATCGAAGCTGAACAGCCTAGCCATAGGCCTGCGTCAGATTGCTGTATCGTCCAGGGACAGCGTGGGGCAGGTGCTCCGCAGGACCAGAGTCGCCAACAACCTGGAGCTCGAACAGATCACTGTGCCCATCGGGGTCCTGCTGGTCATCTTTGAGTCCCGACCCGACTGCCTTCCTCAGGTGTCAGCTCTGGCTATTGCCAGTGGAAATGCTCTGTTACTGAAGGGGGGAAAAGAAGCGGCCAACACCAACCGTATCTTGCATCAGCTGACCCAGGAGGCGCTCTCTATCCACGGGGTGAAGGATGCTATTCAGCTGGTGAGTACCCGTGAGGAGGTGGAGGACCTGTGTAGACTAGATAAGATGATAGACCTGATCATCCCTCGAGGCTCGTCCCAGCTGGTCAGAGACATCCAGAGAGCTGCCAAGGGCATCCCTGTGCTGGGACACAGTGAGGGCATCTGCCATGTCTACATCGACTCTGAGGCCTGCATCGAAAAGGCTATTGACATCATCAAAGACTCTAAATGTGACTACCCTGCGGCCTGCAATGCCATGGAGACCCTACTCCTCCACAGAGATCTACTGAGGACACCTCTGTTTGACCAGATTATAGATATGCTTAGAGTGGAACAGgtgaagatcCATGCAGGCCCCAGGTTTGCCTCCTACCTGACTTTTAGCCCATCTGAGGTGAAGTCTCTGAGGACAGAGTACGGGGACCTGGAGTGCTGCATTGAGGTGGTGGATAGTATGCAGGACGCCGTGGACCACATCCACAAATACGGCAGCTCCCACACAGATGTCATTGTTACAGATAATGAGAATACAGCTGAACAGTTCATGCAGCAGGTGGACAGTGCCTGTGTTTTCTGGAACGCTAGCTCTCGCTTTGCTGATGGATACAGATTTGGTCTTGGTGCGGAGGTTGGCATCAGCACAGCTCGGATCCATGCGAGGGGCCCAGTGGGTCTGGAGGGGCTGCTGACCACCAAGTGGGTCCTCCGGGGTGAGGGGCACACAGTGGCAGAGTTCTCAGAGGCGGGCAGTATGAAGTACCTTcatgagaacatccctgttcCTCAGAGATTCCCCAGCTAGGAACCACAGTCAGTCACAGAACGCTCCAATACAGGAACTGTCATGTAAAGTGGGAAGTGAAAACCTTAAAGTTCATTTTTATGAGTAGGGCTTAAATTGCAACCTTATATATGGATCTGTATGTGACTGTGGGGGTCAACAAACCACTTTCAGATACCACATACATGAAAGCAGCAGGAGGCTGTTTTGTATCTGCTACAGTGTCGGAGCGTGTAAAGCATTAAGATGACCTGGAAATTAATGAAGAGGTGGTGAACGGTTGCACAGGAAAGCAAAATGGTCAaagtatacgtgtgtgtgtacgctatatatacaaaagtatgtggaggcctgttcaaatgagtggattcagctttTTCAGCcatacctgttgctgacaggtgtataaaatcgagcacacagccatacaatctccatagcccagaattggcagt

Function

symbol description
p5cs Predicted to enable glutamate-5-semialdehyde dehydrogenase activity. Predicted to be involved in proline biosynthetic process. Predicted to be active in mitochondrion. Is expressed in adult head; adult heart; embryonic/larval fat body; embryonic/larval midgut; and yolk nucleus. Human ortholog(s) of this gene implicated in cataract; cutis laxa (multiple); enterocele; and hereditary spastic paraplegia (multiple). Orthologous to human ALDH18A1 (aldehyde dehydrogenase 18 family member A1).

NR:

description
delta-1-pyrroline-5-carboxylate synthase-like isoform X2

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016310 phosphorylation biological_process
GO:0006561 proline biosynthetic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0004349 glutamate 5-kinase activity molecular_function
GO:0004350 glutamate-5-semialdehyde dehydrogenase activity molecular_function

KEGG:

id description
K12657 ALDH18A1, P5CS; delta-1-pyrroline-5-carboxylate synthetase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021565588.2 False 2925 mRNA 0.53 18 31270609 31285633
XM_021565589.2 True 2919 mRNA 0.53 18 31270609 31285633

Neighbor

gene id symbol gene type direction distance location
LOC110492870 ate1 coding downstream 87618 31130117 ~ 31182991 (-)
LOC110491806 LOC106579428 coding downstream 251294 30924605 ~ 31019315 (-)
LOC110492868 LOC106579432 coding downstream 726737 29955527 ~ 30543872 (-)
LOC110492894 NA coding downstream 1397027 29855177 ~ 29873630 (-)
LOC110491798 LOC106578369 coding downstream 1568016 29674817 ~ 29702593 (-)
LOC110491810 LOC106579441 coding upstream 19450 31305083 ~ 31307541 (-)
LOC110491807 LOC106576884 coding upstream 28461 31314091 ~ 31462245 (-)
LOC110491813 LOC106579422 coding upstream 189158 31474791 ~ 31496300 (-)
si:ch211-28p3.4 LOC106579421 coding upstream 426668 31712301 ~ 31728943 (-)
ttc34 ttc34 coding upstream 664886 31950519 ~ 31958002 (-)
G1363186 NA non-coding downstream 297888 30965578 ~ 30972721 (-)
G1362759 NA non-coding downstream 514831 30755478 ~ 30755778 (-)
G1362694 NA non-coding downstream 560282 30709871 ~ 30710327 (-)
G1362693 NA non-coding downstream 560936 30708963 ~ 30709673 (-)
G1362689 NA non-coding downstream 562923 30707448 ~ 30707686 (-)
G1363747 NA non-coding upstream 12699 31298332 ~ 31298540 (-)
G1363753 NA non-coding upstream 18136 31303769 ~ 31304637 (-)
G1363757 NA non-coding upstream 27611 31313244 ~ 31313454 (-)
G1363777 NA non-coding upstream 60342 31345975 ~ 31346383 (-)
G1361619 NA other downstream 1345455 29923871 ~ 29925154 (-)
G1361290 NA other downstream 1773054 29497113 ~ 29497555 (-)
taok2b LOC106579406 other downstream 3089669 28177715 ~ 28237354 (-)
G1359763 NA other downstream 3106382 28163463 ~ 28164227 (-)
G1359412 NA other downstream 3742472 27527163 ~ 27528137 (-)
G1363836 NA other upstream 353804 31639437 ~ 31650697 (-)
G1364105 NA other upstream 600116 31885749 ~ 31886112 (-)
G1364348 NA other upstream 733161 32018794 ~ 32019498 (-)
G1365099 NA other upstream 1348832 32634465 ~ 32635511 (-)
G1366703 NA other upstream 2398378 33684011 ~ 33684473 (-)

Expression


Co-expression Network