LOC110491810 (LOC106579441)


Basic Information

Item Value
gene id LOC110491810
gene name LOC106579441
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 31305083 ~ 31307541 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021565590.2
GATGGATCTGCTGAGCAGGACAGACCCAAGCAAAGTGAACCTGGATGAGCCTAAAGCTGACCAAATTCTCACCCTCACCAACAATATGCTGCTACTCATCCACTCCCAGACCCCCATTACCAAGAGACTCATCAAGAGCTATTCTACAGAGGTGTCCCTGGACCCAGAGACAGCACACCCCAAGCTGGTAATTTCCCTGCACGGTGACAGTGTCACCTACACAGACACCTGGCAGGAACTACCAGAGCTCCCAGGACGCTTTGACACCACCCTCAACGTGATCAGCCTGCAGGGCTTCAGCTCCGGGCGTCACTACTGGGAGATAGATGTGGCTGGGAAGACTTACTGGGAGCTGGGCCTCACCTACCCCACCATCTCCCGCAAGGGACGGGCCGAGGACTGCTGGCTGGGTCGCGGCTCTGACTCCTGGGCCATGGAATTCTTTGACGGGGAGTACACAGCCTGGCATGGTGGGGTGCCCCACCAGCTGCCTGTCACGAAACACTTAAGCCGTATTGGGGTCCTGTGTAGTTTCCCAGCGGGCCTAGTGTCTTTCCTGGGGGCGGACAGCATGACCCCTCTGTTCTCGTTTTGTGTGGGGGCGTTCAAGGACTGTCTCCACCTGGCATTGTGCCCAGGTCACGACCACAACGGTACGAACGCCAAACCAATTTTGATCTGTAACGCACCTCCAACTCCTAGTTCTATCCAGAATGCCCAAGAATGCTGACTCTGCTCCTTATGATACTCAAAGGGGATGATTCCCTTTTTAAGCGATTTTCTCTCAAcacgtattctgaccttgaacttaggCATGAGAATAGCACACTATTCACCTGCTTTTCTTTTTGGGTGGATATCTAATATCTAATGAAGGTGTGGCAGAGGTGTCTATAGATATGCCATATTCTCACATCGAATTAATGTCCTAATAATTCAGCCACCTTTACGCAAGAGGAAAAAGTATCTACTTAATATTTTCCGATTGAAATAACATCATTCTCCATGCAGTGTAATTTACAATTTCATGAGAGCTATTGAAAAGAGCTAGGTAAATTAGTAATCCATTTGgataaggggattgtaaatattAATGCTACTTGTTTTAGATATATTTTATCTTATAATCACTGGAGACAattgtgaaaccagtcatatggcaACAAAATTAAGCATATCGATATATCAACTTTGTCACATTAAAGAGTATGAAAtgcattatgcagaattttaatTGTacagccttttaacttgcagggatgggccCTCTTGAAtatcttaattataggctaccccaactttctctgtttcctatttctattgtgttaaatattagccactatcagtATTGACAGTCATTAGGCTtaataacaacacatctgccatt

Function

NR:

description
probable E3 ubiquitin-protein ligase TRIML1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021565590.2 True 1387 mRNA 0.46 2 31305083 31307541

Neighbor

gene id symbol gene type direction distance location
LOC110491809 p5cs coding downstream 19450 31270609 ~ 31285633 (-)
LOC110492870 ate1 coding downstream 122092 31130117 ~ 31182991 (-)
LOC110491806 LOC106579428 coding downstream 285768 30924605 ~ 31019315 (-)
LOC110492868 LOC106579432 coding downstream 761211 29955527 ~ 30543872 (-)
LOC110492894 NA coding downstream 1431501 29855177 ~ 29873630 (-)
LOC110491807 LOC106576884 coding upstream 6553 31314091 ~ 31462245 (-)
LOC110491813 LOC106579422 coding upstream 167250 31474791 ~ 31496300 (-)
si:ch211-28p3.4 LOC106579421 coding upstream 404760 31712301 ~ 31728943 (-)
ttc34 ttc34 coding upstream 642978 31950519 ~ 31958002 (-)
LOC110491820 LOC106567387 coding upstream 659181 31966722 ~ 31989796 (-)
G1363753 NA non-coding downstream 446 31303769 ~ 31304637 (-)
G1363747 NA non-coding downstream 6543 31298332 ~ 31298540 (-)
G1363186 NA non-coding downstream 332362 30965578 ~ 30972721 (-)
G1362759 NA non-coding downstream 549305 30755478 ~ 30755778 (-)
G1362694 NA non-coding downstream 594756 30709871 ~ 30710327 (-)
G1363757 NA non-coding upstream 5703 31313244 ~ 31313454 (-)
G1363777 NA non-coding upstream 38434 31345975 ~ 31346383 (-)
G1363874 NA non-coding upstream 160355 31467896 ~ 31468974 (-)
G1363876 NA non-coding upstream 164790 31472331 ~ 31472532 (-)
G1361619 NA other downstream 1379929 29923871 ~ 29925154 (-)
G1361290 NA other downstream 1807528 29497113 ~ 29497555 (-)
taok2b LOC106579406 other downstream 3124143 28177715 ~ 28237354 (-)
G1359763 NA other downstream 3140856 28163463 ~ 28164227 (-)
G1359412 NA other downstream 3776946 27527163 ~ 27528137 (-)
G1363836 NA other upstream 331896 31639437 ~ 31650697 (-)
G1364105 NA other upstream 578208 31885749 ~ 31886112 (-)
G1364348 NA other upstream 711253 32018794 ~ 32019498 (-)
G1365099 NA other upstream 1326924 32634465 ~ 32635511 (-)
G1366703 NA other upstream 2376470 33684011 ~ 33684473 (-)

Expression


Co-expression Network