LOC110491820 (LOC106567387)


Basic Information

Item Value
gene id LOC110491820
gene name LOC106567387
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 31966722 ~ 31989796 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036946723.1
atttcatagtggcACAATTTCATTATACCAGGCGTGGAGtgtgctgccatcctgttagaaggtaacagattattttattacaatggtTCAATTGGATTTTCATTGTGTCCAATGGTGTTATTTGCCCCCTAGTGGATGTTTCTGGTACTTAGAAAGACTACgcaaacaggaagtagagaatttgttctgcacgcatagaagcagctacaaacaacgctacggtgcaggtctttcaatgtagttatttcttgtcacgcttcagacttggaaaatatttgtttGTTTTGACTCTAGCCTGTCTCGACTCTACACAGAGTTGCACAGAGGAGGTGCTAAAAAATTACCCGGAAAGTAGCTGCAACAAATGTCCAGCAGGAAAGAGTGCACGGCTACTTCAACCCCCAATCTCCCAAATCCAACACCCAACCCCGCCATCATCAAAAATACAGACACTTCTCATCTCCTCTACACCATGATGTATGTCCTTCTGGTTTTCCTGGTCACCACTCTGTTAATGGCCAGTCTCCTGGTACTGACtaagggaggatggagggaacaTGGCTGTTGGGCAAACCCTGAAAAGGAACTCCAGTTGCCTACAAGGGACACCTCAGCCAACGTGGTCATTTGTTTTGAAAACTCCATCTCgtgctacagaaacactgctaaccaaacaacagtgctaggtgcctgCCCACatgaattaaaggATCAGCTTCATCATCAGCCAAACTACCCAACTTCACTGACGCTGAACATTACTGAAGGGATTCCCATGATGACACTCGCTCACAGTGCTGCCAAGACTGAGTTTGACCCCCTTGTCACACCCCTGCTGCCAGACAGAGAGCCCAGAGtcCCTCGCCAGGACACCCAGGAGGAGCACTGGCCCGTGATGGTGTTATATGCCATCATCAAGGAGGTGCCTCTGCGGCGATGGAAGGAATTCCTGCGCGTGCTCTCCCTGACCGACCGGCAGCTGGATCGTGTGGAGCCAGATGCTGCGGCTGTGGAGCCAGGGCCCGACTGCAAGTCTGGAGGACGTATACTCAGCCCTGCTCTACATGGACCTGGCTGGCTGTGCCTACCAGCTGCAGGGTTGTCTGGAGCAGCTGCAGTGGAGAGCCACAACCAATGACATCACCACAGTTTCATAGGACAACTGAGTAGGGATGGACATGAGTATTCGAACAGACGTCAAAAATCGGTCTTAACCAGAGATCACATTGTTTTCAAATACTGTGTTGCAACAAAGCGCTAGGTCGCTCTCCATGCTCAATCTCTCGGTTTGTCAATGTTTATGAATTCCCCACAATGTAACAAAAGTATCAGAGGTACTAAATGTAGGCTACCGATATTCATTGCCACTTCCCCAATCTAGAATGTTTGGTTATGGTCTTTTCTGTTTATTCAATATATTAATACTGCATACCGTTCTCATTCTGGTAGTGTACACGTTTGGAGAGCTCACAAACTGCGCTGTGATAATGaagttgtggtgtatttaattatacaaaaatataaatgcaacaatttca
>XM_021565608.2
ACAATTTCATTATACCAGGCGTGGAGtgtgctgccatcctgttagaaggtaacagattattttattacaatggtTCAATTGGATTTTCATTGTGTCCAATGGTGTTATTTGCCCCCTAGTGGATGTTTCTGGTACTTAGAAAGACTACgcaaacaggaagtagagaatttgttctgcacgcatagaagcagctacaaacaacgctacggtgcaggtctttcaatgtagttatttcttgtcacgcttcagacttggaaaatatttgtttGTTTTGACTCTAGCCTGTCTCGACTCTACACAGAGTTGCACAGAGGAGGTGCTAAAAAATTACCCGGAAAGTAGCTGCAACAAATGTCCAGCAGGAAAGAGTGCACGGCTACTTCAACCCCCAATCTCCCAAATCCAACACCCAACCCCGCCATCATCAAAAATACAGACACTTCTCATCTCCTCTACACCATGATGTATGTCCTTCTGGTTTTCCTGGTCACCACTCTGTTAATGGCCAGTCTCCTGGTACTGACtaagggaggatggagggaacaTGGCTGTTGGGCAAACCCTGAAAAGGAACTCCAGTTGCCTACAAGGGACACCTCAGCCAACGATCAGCTTCATCATCAGCCAAACTACCCAACTTCACTGACGCTGAACATTACTGAAGGGATTCCCATGATGACACTCGCTCACAGTGCTGCCAAGACTGAGTTTGACCCCCTTGTCACACCCCTGCTGCCAGACAGAGAGCCCAGAGtcCCTCGCCAGGACACCCAGGAGGAGCACTGGCCCGTGATGGTGTTATATGCCATCATCAAGGAGGTGCCTCTGCGGCGATGGAAGGAATTCCTGCGCGTGCTCTCCCTGACCGACCGGCAGCTGGATCGTGTGGAGCCAGATGCTGCGGCTGTGGAGCCAGGGCCCGACTGCAAGTCTGGAGGACGTATACTCAGCCCTGCTCTACATGGACCTGGCTGGCTGTGCCTACCAGCTGCAGGGTTGTCTGGAGCAGCTGCAGTGGAGAGCCACAACCAATGACATCACCACAGTTTCATAGGACAACTGAGTAGGGATGGACATGAGTATTCGAACAGACGTCAAAAATCGGTCTTAACCAGAGATCACATTGTTTTCAAATACTGTGTTGCAACAAAGCGCTAG

Function

NR:

description
uncharacterized protein LOC110491820

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036946723.1 False 1538 mRNA 0.47 8 31966722 31989796
XM_021565608.2 True 1158 mRNA 0.50 7 31966999 31989783

Neighbor

gene id symbol gene type direction distance location
ttc34 ttc34 coding downstream 8720 31950519 ~ 31958002 (-)
si:ch211-28p3.4 LOC106579421 coding downstream 237779 31712301 ~ 31728943 (-)
LOC110491813 LOC106579422 coding downstream 470422 31474791 ~ 31496300 (-)
LOC110491807 LOC106576884 coding downstream 504477 31314091 ~ 31462245 (-)
LOC110491810 LOC106579441 coding downstream 659181 31305083 ~ 31307541 (-)
LOC110491822 LOC106567384 coding upstream 67152 32056948 ~ 32096133 (-)
LOC110491823 NA coding upstream 91911 32081707 ~ 32086786 (-)
LOC110491825 LOC100380856 coding upstream 240491 32230287 ~ 32350853 (-)
pigt LOC106567380 coding upstream 446431 32436227 ~ 32466311 (-)
LOC110491830 LOC106567378 coding upstream 628952 32618748 ~ 32628980 (-)
G1364313 NA non-coding downstream 20166 31946321 ~ 31946556 (-)
G1364124 NA non-coding downstream 44339 31920896 ~ 31922383 (-)
G1364123 NA non-coding downstream 47362 31913091 ~ 31919360 (-)
G1364117 NA non-coding downstream 59232 31901494 ~ 31907490 (-)
G1364118 NA non-coding downstream 63412 31899840 ~ 31903310 (-)
G1364347 LOC106581475 non-coding upstream 27617 32017413 ~ 32017647 (-)
G1364357 NA non-coding upstream 42098 32031894 ~ 32032230 (-)
G1364358 NA non-coding upstream 42555 32032351 ~ 32032690 (-)
G1364366 NA non-coding upstream 54795 32044591 ~ 32045093 (-)
G1364341 NA non-coding upstream 64813 32054609 ~ 32056554 (-)
G1364105 NA other downstream 80610 31885749 ~ 31886112 (-)
G1363836 NA other downstream 316025 31639437 ~ 31650697 (-)
G1361619 NA other downstream 2041568 29923871 ~ 29925154 (-)
G1361290 NA other downstream 2469167 29497113 ~ 29497555 (-)
taok2b LOC106579406 other downstream 3785782 28177715 ~ 28237354 (-)
G1364348 NA other upstream 28998 32018794 ~ 32019498 (-)
G1365099 NA other upstream 644669 32634465 ~ 32635511 (-)
G1366703 NA other upstream 1694215 33684011 ~ 33684473 (-)
G1366756 NA other upstream 1757604 33747400 ~ 33751407 (-)
LOC110491043 NA other upstream 1873710 33863087 ~ 33870055 (-)

Expression


Co-expression Network