pigt (LOC106567380)


Basic Information

Item Value
gene id pigt
gene name LOC106567380
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 32436227 ~ 32466311 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021565618.2
TCGTGCGCCGGAAGTACTTTTTTTAGTGTTGCTAATGGCACGCTGATTGTTCAGCATTCGGAAAAATGGCAGCTCACAGGTGCAATATTTTTATGTTGGTGTTCGTTCTTTGTGGATTAACATATGTGTTAGTTAGAGCGGAGATAGAAGACACAAATCATGTGAAAGATGCTGAAAGCGTGGCCGTTGATATTGCACCGAAGGCGAATATAGGCGCGTCACTGCGATCAACTAAAACCGAGGACCAAACCCAGGCCGCTGAAGAGGAGAGGCAATGGGAGGCCGAAACGAACCCTGTAGATGCCCCAAGCGACAACAAAGCTGACCATGTCCATGATACCATGCAAAACCTTGACAGTCGTCCAGCACCGTATGTAAAAGACCAAACTCAAGAGGCAGCGGAAGAGGAGAGGCAATGGGAGGCTACCGAGGTCAAAGAAGCTGACCATGTCCCTGACACCATGCAAACCCCAGACGTCCCTCCACCAACGCCCGCAAAAGATCAGTTTCAGGAAGAGTTGGTGATCAGACCATTGCATTCTGGGGATATCTATGCCAGCTTCCAGTTCCGCACCATGTGGGATACAGACTTCTTACGAGGAAGTAAAGTCTCCCACTACCGACTCTTCCCAAAGTCGCTGGGCCAGGTGATTTCAAAGTTCTCTGTGCGTGAGCTCCACATCTCCTTCACTCAGGGCTACTGGAGGACCATGCAGTGGGGCCAGCCATTCCTACCATCGCCCCCTGGTGCTGAACTGTGGGTATGGTTCCAGGACACTGTCACTGATGTGGACGGTGCCTGGAAGGAGCTGACTAACGTTCTCTCAGGGATCTTCTGTGCCTCCCTGAACTTCATTGACTCCACCAACACGGTGCAGCCCAGTGCCTCCTTCAAACCTCTTGGCTTGGGCAACGTAACAGACCAGCGCTTCCTCCGCTATGCTGTGTTGCCGCGGGAGATCGTCTGTACTGAGAACCTGACTCCGTGGAAGAAACTCCTTCCCTGTGGCTCCAAGGCTGGTCTGGCAGTCCTGATGAAGTCTGAGAAACTCTTCCACAGCAGCTTCCACTCCCAGGCTCTACACTTCAGACCTGTGTGTCAGGACTGGAAGTGCAAATCCACAGTGTgggagctgagacagacactgaACGTGGTGTTCGACCTGCACACCTCTGGCCAGGGCAAACGAGAGTGGTCCCTGTTCAAGATGTTCTCTCGCACCCTGACTGAAGCCTGCCCGCTGGCCTCCTCCAGTAAAGTGTACGTGGATGTCACAGACAACCCTCAGGGAGAGCTGTTTGAGCTGAGCCCAACCACTCCCCTGCTCAGCCAGGCTGTGGTGCTTGGGGACCGGAGAACCTACTCGGTCTATGACCTCACTAACCAGGCCACGTTCGGACAAACGCGCTCCCTCAACATGCTGCTGCGCTGGCGAGCAGCCGAGAGTGGAGACATGCTGCGTCCCCTGCTGCATGGAGAGCGCTACGTGGCCGGCTACGGGCTGCAGACGGGAGAGATCCACACCCTGATGTACAACAACCACCCATACCGGGCCTTCCCCGTGCTCCTGCTAGACACTGTGCCCTGGTACCTGCGCCTCTACATCCACACGCTCACTGTCACCAGCAAGGGCCGTGACAACAAACCCAGCTACATTCACTACCAGCCGTCCAAGGACCGCCTTCGGCCCCACCTGCTCGAGATGCTGGTCCAGCTGCCCCCTAACTCTGTGACCGAGGTGACCATGCAGTTTGAGAGGGCACTCCTCAAGTGGACCGAGTACACCCCCGACCCCAACCATGGCTTCTACGTCGGGTCTTCTGTTATCAGCGCTCTCGTGCCCAGTGTCGTTGCCATGGATACCAACAGCACTCGGGAATGCCCACTTTTCAGCAGCTTTTTCCCCTGTAAAGAGGAGTCCAGTTACTTCATGCGGGTCTACACGGAGCCCTTGCTGGTGAACCTGCCCACCCCTGACTTCAGCATGCCCTACAATGTCATCTGCCTCACTTGCACCGTGGTGGCCGTGGGTTACGGTTCCCTCTACAATCTCTTGACCCGCACCTTCCAGGTGGAGGAGCCCAGTCCGGGCCTGGCCAAACGCCTAGCCAACATCATCCGCAGGCTACGGGGTGTGCCACTGCTGTGATGAGCCAAAATGCTAacttaaacaacaacaacagcagaggTCGGTGGCTACATCACTTGGGAACTATGAATGTAAGTTTCAAGAAGATAACGCTTTAAGTGCTGGAAGCTTCGACAAAGAAAATAAATTACTCTTTAAGTTTGTTTCGTGAATGATAAAGGAGTTGATGAACAATGAAGTCTCTAATGAAGTGTCATGGATTCGATGGACGTTAAAGGCTTTTTCTTGCCCGTGAGAAGCAAAAAGGGTGGCCTTTCTTGAGTGCACTACTACTGCTGTTGGTCTAGTTAAACAGAGAATAATGTATTTTTCATGTTTAAGGCAGGAACCAAAGTGTTTGCTCCAGGGTTTCAGTGGGGACAGATGGCTGCAAGAATCACAGCAAGCTCATATTGGTTCCTGGAAAAAGTAATTGTCTGTTATAGATCACTAGGAAGCCATTGCTCTGAGATCTGGGGCCGTACGTATCAAGCGTCTCGgagtatgagtgctgatctaggatcgtTGTGTTCTAGAAAACAACTggtcctaaatcagcactccttctCTGAGACGTTTGGTAAATTTCGTCTCCAGATTAATCTCTTAAATCTTTCCTGAGATAAATAAGATTTGTGTTTTTAGTTGATGTTGAAATGCTAAATGCACTGACTTACAGAACTTTCATAAACAGTTGTCTTTTGTTTTGATACGTGGGATTTCGTATCACATTTGTTCATTAATCATAGAACCAGTCAAAACGTTTGCACTTGTAGAAAACCCCAAAATCTCTACAGGAAACGACTGTTGATTTTAACTTGCGTTTGTCCAAATTTCTGTTTGAAGTTGTAGTGTTCTCTAATTGGCATTACCTTTTGGTAAGCCTTTGTAGCACAAATACCCAACAGACAACATTTAAAACGATGAGTTTGCCATGCATTTCTATTAGGAACTTGACTAAGGCTAAGCACCCTCCATGCATTTACTTTTTAACACTGCTCGTTCTTTGTATATTAAACTGTGCTTGATAGATTAATTTTACTGAACAACATTCAAATGTGTGAACATATATTGGGTAACCTTgggtatataaaaaaataatacatcTATAAAACTGGTCAACTGACCAAAcatttgtcatttttgttttaATCCAATGGCTTTAAGGCAAGGCACCACATCCTAATAAGgtacatcccccccccccttattcATATCACAATTTTACCAGTTGAATGTAGACACAAACATAATACTTTTTGTATTACAACTTTCCTGAAATGTTGTATTAAAATATGCAAATGAGGCTCTCAATAAATATGTCTACATTTGCATATACTGCAAATCTGTTTTTCTGGACA

Function

NR:

description
GPI transamidase component PIG-T-like

GO:

id name namespace
GO:0016255 attachment of GPI anchor to protein biological_process
GO:0042765 GPI-anchor transamidase complex cellular_component

KEGG:

id description
K05292 PIGT; GPI-anchor transamidase subunit T

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021565618.2 True 3490 mRNA 0.48 12 32436227 32466311

Neighbor

gene id symbol gene type direction distance location
LOC110491825 LOC100380856 coding downstream 85374 32230287 ~ 32350853 (-)
LOC110491822 LOC106567384 coding downstream 340094 32056948 ~ 32096133 (-)
LOC110491823 NA coding downstream 349441 32081707 ~ 32086786 (-)
LOC110491820 LOC106567387 coding downstream 446431 31966722 ~ 31989796 (-)
ttc34 ttc34 coding downstream 478225 31950519 ~ 31958002 (-)
LOC110491830 LOC106567378 coding upstream 152437 32618748 ~ 32628980 (-)
LOC110491831 LOC106567377 coding upstream 170235 32636546 ~ 32735446 (-)
LOC110491834 NA coding upstream 502533 32968844 ~ 32970270 (-)
LOC110491838 LOC106567371 coding upstream 727225 33193536 ~ 33195476 (-)
LOC118939522 LOC106572132 coding upstream 905065 33371376 ~ 33416495 (-)
G1364769 NA non-coding downstream 34498 32401495 ~ 32401729 (-)
G1364767 NA non-coding downstream 35168 32399784 ~ 32401059 (-)
G1364754 NA non-coding downstream 42732 32393247 ~ 32393495 (-)
G1364753 NA non-coding downstream 43544 32392447 ~ 32392683 (-)
G1364736 NA non-coding downstream 54636 32381222 ~ 32381591 (-)
G1365034 NA non-coding upstream 2607 32468918 ~ 32469149 (-)
G1365036 NA non-coding upstream 3658 32469969 ~ 32470176 (-)
G1365124 NA non-coding upstream 129807 32596118 ~ 32596365 (-)
G1365125 NA non-coding upstream 131418 32597729 ~ 32598051 (-)
G1365133 NA non-coding upstream 140787 32607098 ~ 32607302 (-)
G1364348 NA other downstream 416729 32018794 ~ 32019498 (-)
G1364105 NA other downstream 550115 31885749 ~ 31886112 (-)
G1363836 NA other downstream 785530 31639437 ~ 31650697 (-)
G1361619 NA other downstream 2511073 29923871 ~ 29925154 (-)
G1361290 NA other downstream 2938672 29497113 ~ 29497555 (-)
G1365099 NA other upstream 168154 32634465 ~ 32635511 (-)
G1366703 NA other upstream 1217700 33684011 ~ 33684473 (-)
G1366756 NA other upstream 1281089 33747400 ~ 33751407 (-)
LOC110491043 NA other upstream 1397195 33863087 ~ 33870055 (-)
LOC110491862 tnfrsf6b other upstream 2611790 35077807 ~ 35079706 (-)

Expression


Co-expression Network